AT2G01755

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014618
Physical Location & Seq
Reverse (-)
332188 .. 332808
621 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01755.1

Sequence Viewer

Length: 522 bp
ATGCTTATCACGCCGGCGAATTTATCCGGTGGCATAGCCGGATTATTCGTTTTCGGACAGAAAGATCAAATGACTAAAATACCCTCGCTCACAAACTCGTATAACTACCGGAAAAAACTTTTCACCGTCCCTCCAGTGGCGGAGAGAAGAAGAGCTTTGAAGATGTTCTGGTGCGGTGCTCGGAGAAGGGTGAGAGACGAGGGAGGTGGTGAAGATGAAGATGAAATGTATGGATACAACGAGGAAATGGCGATGTTGGAGATATATAGCCAGTCGTGTAGAGAAGAAGCGCTTATAGTGACGGCCATTGTCGACGATGAAGAAGTGGAAGTTGTAATCTTTAAAGGAGTGTCGTCGTGCTTGAGCGGAGAAACGGCGGTGGATCCGGCGAGGAGTGTGTTGCCGGAGAGAGCAGTCATTACAAAGATTGATAGAGTGAGAGGTCCTTTTGATCCTTCACAGATTCATTATATTCAAAGGGACATCTCTTTTCAAGCCTTCAAGGAGACCAGACTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

5.36

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7734 PF24869 84 - 169 1.5e-34 Domain of unknown function (DUF7734)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01755 AT2G01755
fragaria_vesca FvH4_4g33480
malus_domestica MD13G1019900.v1.1
prunus_persica Prupe.1G334100_v2.0.a1
pyrus_communis pycom13g01680
rosa_chinensis RchiOBHm_Chr4g0442791
rosa_laevigata RLG00000005984
rosa_multiflora Rmu_ssc0000204.1_g000020
rosa_roxburghii Rroxscaffold_5G00383570
rosa_rugosa Rorug04G0343100 Rorug04G0343200
rosa_samantha Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana Rw4G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 1 cut(s) 312
AciI CCGC 4 cut(s) 140, 174, 366, 377
AclWI GGATC 3 cut(s) 377, 390, 446
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 19
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 4 cut(s) 160, 476, 494, 502
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 2 cut(s) 189, 500
AlwI GGATC 3 cut(s) 377, 390, 446
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 115, 202, 221
AvaII GGWCC 1 cut(s) 443
BamHI GGATCC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 181
BceAI ACGGC 2 cut(s) 318, 390
BciVI GTATCC 1 cut(s) 227
BcoDI GTCTC 2 cut(s) 189, 500
BfoI RGCGCY 1 cut(s) 293
BfuI GTATCC 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 500
BsaWI WCCGGW 2 cut(s) 26, 108
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 2 cut(s) 134, 271
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 134, 271
BseRI GAGGAG 1 cut(s) 406
BshFI GGCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 6 cut(s) 14, 27, 39, 109, 386, 404
BslFI GGGAC 2 cut(s) 113, 494
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 189, 500
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 113, 494
BsnI GGCC 1 cut(s) 305
Bso31I GGTCTC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 64, 382, 451
BspACI CCGC 4 cut(s) 140, 174, 366, 377
BspANI GGCC 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 3 cut(s) 377, 390, 446
BspQI GCTCTTC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 2 cut(s) 134, 271
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 3 cut(s) 64, 382, 451
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 67, 385, 454
BstMAI GTCTC 2 cut(s) 189, 500
BstMBI GATC 3 cut(s) 64, 382, 451
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 305
BtgZI GCGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 443
CviJI RGCY 5 cut(s) 38, 155, 270, 305, 497
CviKI_1 RGCY 5 cut(s) 38, 155, 270, 305, 497
DpnI GATC 3 cut(s) 66, 384, 453
DpnII GATC 3 cut(s) 64, 382, 451
DraI TTTAAA 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
EciI GGCGGA 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 443
Eco47III AGCGCT 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 443
Esp3I CGTCTC 1 cut(s) 189
FaiI YATR 7 cut(s) 35, 102, 231, 265, 267, 296, 471
FalI AAGNNNNNCTT 4 cut(s) 139, 171, 276, 308
FaqI GGGAC 2 cut(s) 113, 494
FblI GTMKAC 1 cut(s) 312
GlaI GCGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 1 cut(s) 305
HapII CCGG 6 cut(s) 14, 27, 39, 109, 386, 404
HhaI GCGC 1 cut(s) 292
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 463, 513
HpaII CCGG 6 cut(s) 14, 27, 39, 109, 386, 404
HphI GGTGA 3 cut(s) 115, 202, 221
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 56, 183
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 317, 358
HpyAV CCTTC 3 cut(s) 180, 465, 508
HpyCH4III ACNGT 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HspAI GCGC 1 cut(s) 290
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Kzo9I GATC 3 cut(s) 64, 382, 451
LguI GCTCTTC 1 cut(s) 145
LpnPI CCDG 9 cut(s) 27, 40, 52, 122, 147, 154, 284, 399, 417
MaeIII GTNAC 1 cut(s) 298
MalI GATC 3 cut(s) 66, 384, 453
MbiI CCGCTC 1 cut(s) 366
MboI GATC 3 cut(s) 64, 382, 451
MboII GAAGA 7 cut(s) 159, 162, 172, 224, 230, 296, 332
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 7 cut(s) 94, 141, 193, 197, 235, 384, 434
MreI CGCCGGCG 1 cut(s) 13
MroNI GCCGGC 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 342
MspI CCGG 6 cut(s) 14, 27, 39, 109, 386, 404
MwoI GCNNNNNNNGC 1 cut(s) 10
NaeI GCCGGC 1 cut(s) 15
NdeII GATC 3 cut(s) 64, 382, 451
NgoMIV GCCGGC 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 463
PleI GAGTC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 507
PpuMI RGGWCCY 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 443
PspPPI RGGWCCY 1 cut(s) 443
PsuI RGATCY 1 cut(s) 382
SalI GTCGAC 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 342
Sau3AI GATC 3 cut(s) 64, 382, 451
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 1 cut(s) 507
SduI GDGCHC 1 cut(s) 181
SetI ASST 3 cut(s) 157, 208, 445
SgrAI CRCCGGYG 1 cut(s) 13
SinI GGWCC 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 1 cut(s) 19
SsiI CCGC 4 cut(s) 140, 174, 366, 377
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 19
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 4 cut(s) 231, 237, 333, 455
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.