pycom13g01680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014618
Physical Location & Seq
Forward (+)
1112194 .. 1113032
839 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01680.2

Sequence Viewer

Length: 717 bp
ATGCTTACAAATAATATGGTCGCACAGCTCTACTTAAATTTTTCCCACCGCTGTGACCCACACCTTATCTTCAAGAACAAAATTGTTGTATCCACAAGTTTTTGTGACACTCTTCTGCTTGTGCACTCACACTTGGAAATCCACGTTATTATGTTGAAGCATTTCCAACTGGGAAGATGGACTGTGCTGGTCTCCTCCCCACCCAAATCACCGTTTTCTCCAAATTCAACCACCATCACCTCCTCCTCCTCTGAATCTGCAGCTACCAGATATTTCAGTACATGCTCTGCCTCAGCCTTCAACGTGAATGCCTTTGGACCAAGGGGCTTGAGCACTCGATGCGGCGCAAGGCGGAGAGTGCTCAGATACGACGATGACGAGGATGACGACGAGGACGTCGAGTACGGACACAATAAGGAGATAACAGTGTTGGAATTATACAGTCAGAGTGTGAGAGGAGAAGCACTTATCGTGCATGCAGTGGTGGATGACCAGGATGTAGAAGTGCTTATCTTCAAGGGATTCTCTTCGAGCTTGAGTTATGGGACATCACCGGACCCATCGAAGAGCATTCTTCCAGCAAGGGCAGTGATCAAGTCTATAGACAGGGTGAAAGGACCTTTCGACCCTTCTAATATTGAATACTTGCAGAAAGACCTCACCTGGGAAGAGTTTAAGAGCACTACTCTACCCCCCAACTTGCAACTCCCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.64

Weight (kDa)

5.89

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01755 AT2G01755
fragaria_vesca FvH4_4g33480
malus_domestica MD13G1019900.v1.1
prunus_persica Prupe.1G334100_v2.0.a1
pyrus_communis pycom13g01680
rosa_chinensis RchiOBHm_Chr4g0442791
rosa_laevigata RLG00000005984
rosa_multiflora Rmu_ssc0000204.1_g000020
rosa_roxburghii Rroxscaffold_5G00383570
rosa_rugosa Rorug04G0343100 Rorug04G0343200
rosa_samantha Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana Rw4G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AatII GACGTC 1 cut(s) 399
AciI CCGC 3 cut(s) 49, 342, 352
AcsI RAATTY 2 cut(s) 37, 223
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 2 cut(s) 280, 404
AfiI CCNNNNNNNGG 1 cut(s) 664
AgsI TTSAA 6 cut(s) 73, 157, 228, 301, 517, 641
AjnI CCWGG 2 cut(s) 492, 662
AleI CACNNNNGTG 1 cut(s) 51
AluBI AGCT 3 cut(s) 28, 263, 534
AluI AGCT 3 cut(s) 28, 263, 534
Alw21I GWGCWC 4 cut(s) 126, 335, 363, 683
Alw26I GTCTC 1 cut(s) 196
Alw44I GTGCAC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 37, 223
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 3 cut(s) 317, 556, 617
AsuHPI GGTGA 5 cut(s) 201, 229, 543, 622, 652
AvaII GGWCC 3 cut(s) 317, 556, 617
BaeGI GKGCMC 1 cut(s) 126
Bbv12I GWGCWC 4 cut(s) 126, 335, 363, 683
BbvCI CCTCAGC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 272
BccI CCATC 3 cut(s) 171, 242, 568
BciT130I CCWGG 2 cut(s) 494, 664
BciVI GTATCC 1 cut(s) 100
BclI TGATCA 1 cut(s) 591
BcoDI GTCTC 1 cut(s) 196
BfmI CTRYAG 2 cut(s) 258, 600
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 2 cut(s) 261, 343
BlsI GCNGC 2 cut(s) 262, 344
Bme1390I CCNGG 2 cut(s) 494, 664
Bme18I GGWCC 3 cut(s) 317, 556, 617
BmgT120I GGNCC 3 cut(s) 317, 556, 617
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 2 cut(s) 494, 664
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 329
BmuI ACTGGG 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 670, 702
Bpu10I CCTNAGC 1 cut(s) 292
BpuEI CTTGAG 2 cut(s) 349, 556
BsaHI GRCGYC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 320, 663
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse1I ACTGG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 494, 664
BseDI CCNNGG 2 cut(s) 320, 663
BseGI GGATG 3 cut(s) 388, 493, 502
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMII CTCAG 2 cut(s) 306, 376
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 5 cut(s) 184, 232, 235, 238, 471
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 1 cut(s) 272
BsiHKAI GWGCWC 4 cut(s) 126, 335, 363, 683
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 1 cut(s) 664
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 559
BsmI GAATGC 2 cut(s) 313, 570
Bso31I GGTCTC 1 cut(s) 196
Bsp1286I GDGCHC 4 cut(s) 126, 335, 363, 683
Bsp143I GATC 1 cut(s) 591
BspACI CCGC 3 cut(s) 49, 342, 352
BspCNI CTCAG 2 cut(s) 305, 375
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 320, 663
BssMI GATC 1 cut(s) 591
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 494, 664
Bst4CI ACNGT 4 cut(s) 184, 213, 427, 443
Bst6I CTCTTC 4 cut(s) 117, 532, 560, 663
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 2 cut(s) 292, 362
BstF5I GGATG 3 cut(s) 388, 493, 502
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 1 cut(s) 594
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 591
BstMWI GCNNNNNNNGC 2 cut(s) 339, 358
BstNI CCWGG 2 cut(s) 494, 664
BstNSI RCATGY 2 cut(s) 285, 479
BstSCI CCNGG 2 cut(s) 492, 662
BstSFI CTRYAG 2 cut(s) 258, 600
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 272
BsuI GTATCC 1 cut(s) 100
BtsCI GGATG 3 cut(s) 388, 493, 502
BtsI GCAGTG 2 cut(s) 486, 594
BtsIMutI CAGTG 3 cut(s) 432, 486, 594
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 317, 556, 617
Csp6I GTAC 2 cut(s) 279, 403
CviAII CATG 2 cut(s) 282, 476
CviJI RGCY 5 cut(s) 28, 263, 296, 327, 534
CviKI_1 RGCY 5 cut(s) 28, 263, 296, 327, 534
CviQI GTAC 2 cut(s) 279, 403
DdeI CTNAG 2 cut(s) 292, 362
DpnI GATC 1 cut(s) 593
DpnII GATC 1 cut(s) 591
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 4 cut(s) 117, 532, 560, 663
EarI CTCTTC 4 cut(s) 117, 532, 560, 663
EciI GGCGGA 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 317, 556, 617
EcoO109I RGGNCCY 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 492, 662
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 285, 479
FaiI YATR 7 cut(s) 17, 152, 283, 439, 477, 543, 602
FaqI GGGAC 1 cut(s) 559
FatI CATG 2 cut(s) 281, 475
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 261, 343
FokI GGATG 3 cut(s) 395, 500, 509
Fsp4HI GCNGC 2 cut(s) 261, 343
GlaI GCGC 1 cut(s) 346
GluI GCNGC 2 cut(s) 261, 343
HapII CCGG 1 cut(s) 554
HhaI GCGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 2 cut(s) 285, 479
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 2 cut(s) 254, 522
HpaII CCGG 1 cut(s) 554
HphI GGTGA 5 cut(s) 201, 229, 543, 622, 652
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 253, 365, 447
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 3 cut(s) 374, 392, 401
HpyAV CCTTC 2 cut(s) 307, 639
HpyCH4III ACNGT 4 cut(s) 184, 213, 427, 443
HpyCH4IV ACGT 3 cut(s) 144, 303, 396
HpyCH4V TGCA 6 cut(s) 124, 260, 475, 479, 649, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 358
HpyF3I CTNAG 2 cut(s) 292, 362
HpySE526I ACGT 3 cut(s) 144, 303, 396
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 2 cut(s) 285, 479
HspAI GCGC 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 1 cut(s) 591
LguI GCTCTTC 1 cut(s) 560
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 329
MaeII ACGT 3 cut(s) 144, 303, 396
MaeIII GTNAC 2 cut(s) 53, 104
MalI GATC 1 cut(s) 593
MboI GATC 1 cut(s) 591
MboII GAAGA 8 cut(s) 61, 104, 186, 505, 519, 566, 577, 680
MhlI GDGCHC 4 cut(s) 126, 335, 363, 683
MluCI AATT 5 cut(s) 37, 81, 223, 434, 711
MmeI TCCRAC 2 cut(s) 190, 411
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 35, 675
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 2 cut(s) 494, 664
Mva1269I GAATGC 2 cut(s) 313, 570
MvaI CCWGG 2 cut(s) 494, 664
MwoI GCNNNNNNNGC 2 cut(s) 339, 358
NdeII GATC 1 cut(s) 591
NlaIII CATG 2 cut(s) 285, 479
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 2 cut(s) 53, 104
NspI RCATGY 2 cut(s) 285, 479
OliI CACNNNNGTG 1 cut(s) 51
PaeI GCATGC 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 560
PcsI WCGNNNNNNNCGW 4 cut(s) 375, 384, 393, 396
PctI GAATGC 2 cut(s) 313, 570
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 254, 522
PkrI GCNGC 2 cut(s) 262, 344
PpuMI RGGWCCY 1 cut(s) 617
Psp5II RGGWCCY 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 492, 662
PspGI CCWGG 2 cut(s) 492, 662
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 3 cut(s) 317, 556, 617
PspPPI RGGWCCY 1 cut(s) 617
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 2 cut(s) 280, 404
RsaNI GTAC 2 cut(s) 279, 403
RseI CAYNNNNRTG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 560
SaqAI TTAA 2 cut(s) 35, 675
SatI GCNGC 2 cut(s) 261, 343
Sau3AI GATC 1 cut(s) 591
Sau96I GGNCC 3 cut(s) 317, 556, 617
ScrFI CCNGG 2 cut(s) 494, 664
SduI GDGCHC 4 cut(s) 126, 335, 363, 683
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 2 cut(s) 258, 600
SinI GGWCC 3 cut(s) 317, 556, 617
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 328, 535
SmoI CTYRAG 2 cut(s) 328, 535
SphI GCATGC 1 cut(s) 479
Sse9I AATT 5 cut(s) 37, 81, 223, 434, 711
SsiI CCGC 3 cut(s) 49, 342, 352
SspI AATATT 1 cut(s) 637
StyD4I CCNGG 2 cut(s) 492, 662
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 4 cut(s) 184, 213, 427, 443
TaiI ACGT 3 cut(s) 147, 306, 399
TaqI TCGA 5 cut(s) 337, 399, 530, 563, 624
TasI AATT 5 cut(s) 37, 81, 223, 434, 711
TatI WGTACW 1 cut(s) 278
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 2 cut(s) 254, 522
Tru1I TTAA 2 cut(s) 35, 675
Tru9I TTAA 2 cut(s) 35, 675
TscAI CASTG 3 cut(s) 432, 486, 594
TseFI GTSAC 2 cut(s) 53, 104
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 53, 104
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 3 cut(s) 432, 486, 594
VneI GTGCAC 1 cut(s) 122
VpaK11BI GGWCC 3 cut(s) 317, 556, 617
XapI RAATTY 2 cut(s) 37, 223
XceI RCATGY 2 cut(s) 285, 479
XmnI GAANNNNTTC 1 cut(s) 161
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.