Prupe.1G334100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014618
Physical Location & Seq
Reverse (-)
31599152 .. 31600288
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G334100.1

Sequence Viewer

Length: 561 bp
ATGATGTTGAAGCACTTCCAATCGGGAAGATGGGTTATGCTCATCTCCTCCTCACCCAAATTACCGTGTTCTCCAAAGCCCACCTCCTCCAAATCTGCAGCAGATTGCAGATATTTCAGAACGTGCTCTGCCTCAGCTGACGCTTTGCAGATCTTGAGACCAAGAAGGGCCTTGAGCATTTGCTGCGCAGCCAGGCGGAGAGCCGTCAGATATGATGATGATGGTGAGGATGAGGAGGAGGAAGAGTACGGGCATCACAAGGAGATAGCAGTGTTGGAATTATATAGTCAGAGTGTGAGAGGAGAAGCACTTATTGTGCATGCAGTGGTGGATGATCAAGATGTGCAAGTGCTTATCTTCAAGGGATTCTCTTCATGCTTGAGCTATAGGACTTCACCGGACCCATCAAAGAGCATTCTTCCTGCAAGAGCGGTGATAAAGTCTATAGACAGGGTTAAAGGGCCTTTTGACCCTTCCAATATAGAATACTTGCAGAAAGGCCTAACATGGGAAGCGTTTAAGAGCACTACTCTACCGCCCAATTTACAAATGTATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.93

Weight (kDa)

8.19

Isoelectric Point (pI)

64.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01755 AT2G01755
fragaria_vesca FvH4_4g33480
malus_domestica MD13G1019900.v1.1
prunus_persica Prupe.1G334100_v2.0.a1
pyrus_communis pycom13g01680
rosa_chinensis RchiOBHm_Chr4g0442791
rosa_laevigata RLG00000005984
rosa_multiflora Rmu_ssc0000204.1_g000020
rosa_roxburghii Rroxscaffold_5G00383570
rosa_rugosa Rorug04G0343100 Rorug04G0343200
rosa_samantha Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana Rw4G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 431
AciI CCGC 3 cut(s) 196, 431, 536
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 2 cut(s) 10, 361
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 137, 384
AluI AGCT 2 cut(s) 137, 384
Alw21I GWGCWC 2 cut(s) 128, 527
Alw26I GTCTC 1 cut(s) 151
AoxI GGCC 3 cut(s) 168, 461, 499
ApeKI GCWGC 3 cut(s) 98, 183, 188
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 3 cut(s) 168, 400, 461
AsuHPI GGTGA 4 cut(s) 45, 236, 387, 445
AvaII GGWCC 1 cut(s) 400
Bbv12I GWGCWC 2 cut(s) 128, 527
BbvCI CCTCAGC 1 cut(s) 133
BbvI GCAGC 3 cut(s) 110, 170, 200
BccI CCATC 3 cut(s) 24, 215, 412
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 151
BfmI CTRYAG 3 cut(s) 96, 385, 444
BglII AGATCT 1 cut(s) 150
BisI GCNGC 3 cut(s) 99, 184, 189
BlsI GCNGC 3 cut(s) 100, 185, 190
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 168, 400, 461
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 514, 546
Bpu10I CCTNAGC 1 cut(s) 133
BpuEI CTTGAG 3 cut(s) 175, 193, 400
BsaI GGTCTC 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 235, 337
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 6 cut(s) 37, 40, 76, 248, 251, 315
BseXI GCAGC 3 cut(s) 110, 170, 200
BshFI GGCC 3 cut(s) 170, 463, 501
BsiHKAI GWGCWC 2 cut(s) 128, 527
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 3 cut(s) 170, 463, 501
Bso31I GGTCTC 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 128, 527
Bsp143I GATC 2 cut(s) 150, 334
BspACI CCGC 3 cut(s) 196, 431, 536
BspANI GGCC 3 cut(s) 170, 463, 501
BspCNI CTCAG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 402
BspMAI CTGCAG 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 431
BssMI GATC 2 cut(s) 150, 334
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 237, 376
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 235, 337
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 2 cut(s) 153, 337
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 150, 334
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 3 cut(s) 96, 385, 444
BstV1I GCAGC 3 cut(s) 110, 170, 200
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 3 cut(s) 170, 463, 501
BtsCI GGATG 2 cut(s) 235, 337
BtsI GCAGTG 2 cut(s) 276, 330
BtsIMutI CAGTG 2 cut(s) 276, 330
Cac8I GCNNGC 1 cut(s) 321
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 168, 400, 461
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 247
CviAII CATG 3 cut(s) 320, 375, 507
CviJI RGCY 8 cut(s) 79, 137, 170, 191, 203, 384, 463, 501
CviKI_1 RGCY 8 cut(s) 79, 137, 170, 191, 203, 384, 463, 501
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 133
DpnI GATC 2 cut(s) 152, 336
DpnII GATC 2 cut(s) 150, 334
Eam1104I CTCTTC 2 cut(s) 237, 376
EarI CTCTTC 2 cut(s) 237, 376
EciI GGCGGA 1 cut(s) 211
Eco147I AGGCCT 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 400
EcoO109I RGGNCCY 2 cut(s) 168, 461
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 3 cut(s) 323, 378, 510
FatI CATG 3 cut(s) 319, 374, 506
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 99, 184, 189
FokI GGATG 2 cut(s) 242, 344
Fsp4HI GCNGC 3 cut(s) 99, 184, 189
FspI TGCGCA 1 cut(s) 187
GlaI GCGC 1 cut(s) 187
GluI GCNGC 3 cut(s) 99, 184, 189
HaeIII GGCC 3 cut(s) 170, 463, 501
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 188
Hin1II CATG 3 cut(s) 323, 378, 510
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 1 cut(s) 366
HpaII CCGG 1 cut(s) 398
HphI GGTGA 4 cut(s) 45, 236, 387, 445
Hpy188I TCNGA 3 cut(s) 119, 209, 291
Hpy188III TCNNGA 3 cut(s) 24, 154, 338
HpyAV CCTTC 2 cut(s) 159, 483
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 8 cut(s) 98, 108, 148, 319, 323, 346, 425, 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 3 cut(s) 323, 378, 510
HspAI GCGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 150, 334
LpnPI CCDG 5 cut(s) 178, 205, 411, 435, 436
Lsp1109I GCAGC 3 cut(s) 110, 170, 200
LweI GCATC 1 cut(s) 262
MaeII ACGT 1 cut(s) 122
MalI GATC 2 cut(s) 152, 336
MbiI CCGCTC 1 cut(s) 431
MboI GATC 2 cut(s) 150, 334
MboII GAAGA 5 cut(s) 39, 254, 349, 363, 410
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 128, 527
MluCI AATT 3 cut(s) 59, 278, 541
MmeI TCCRAC 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 2 cut(s) 456, 519
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 2 cut(s) 150, 334
NlaIII CATG 3 cut(s) 323, 378, 510
NlaIV GGNNCC 1 cut(s) 402
NsbI TGCGCA 1 cut(s) 187
NspI RCATGY 1 cut(s) 323
PaeI GCATGC 1 cut(s) 323
PceI AGGCCT 1 cut(s) 501
PctI GAATGC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 366
PkrI GCNGC 3 cut(s) 100, 185, 190
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 3 cut(s) 168, 400, 461
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 456, 519
SatI GCNGC 3 cut(s) 99, 184, 189
Sau3AI GATC 2 cut(s) 150, 334
Sau96I GGNCC 3 cut(s) 168, 400, 461
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 2 cut(s) 128, 527
SetI ASST 4 cut(s) 86, 125, 139, 386
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 3 cut(s) 96, 385, 444
SinI GGWCC 1 cut(s) 400
SmlI CTYRAG 3 cut(s) 154, 172, 379
SmoI CTYRAG 3 cut(s) 154, 172, 379
SphI GCATGC 1 cut(s) 323
Sse9I AATT 3 cut(s) 59, 278, 541
SseBI AGGCCT 1 cut(s) 501
SsiI CCGC 3 cut(s) 196, 431, 536
StuI AGGCCT 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 125
TasI AATT 3 cut(s) 59, 278, 541
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 456, 519
Tru9I TTAA 2 cut(s) 456, 519
TscAI CASTG 2 cut(s) 276, 330
TseI GCWGC 3 cut(s) 98, 183, 188
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 2 cut(s) 276, 330
VpaK11BI GGWCC 1 cut(s) 400
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.