Rh4BG408400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014618
Physical Location & Seq
Forward (+)
55816099 .. 55817137
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG408400.1

Sequence Viewer

Length: 552 bp
ATGTTGAAGCACTTCCAATTGGGAAATTGGACTATGCTGGTCTCTCCCCCAGCTACATTACCATGTTCTCCTAAGGTCACCTCCTTTGAATCTGAAAAAAGACGTTCCAGTACATGCTCTACCTTCAAAGCTTTGAAGAATGTCTTCAACCCACGAGTCTACTCGAGCATTCATTGCGCTGCAAGACGAAGGGTGAGATACGATGACGATGATGATGGGGATGAAGATGAAGAGAATGAGGAGAATAACAAGGAGATAGCATTGTTGGAGCTGTATAGTCAGTGTGTGAGAGGAGAGGCACTTATTGTTCATGCAATGGTGGATGACCAGCCAGTGGAAGTGCTTGTCTTCAAGGGGTTCTCTTCATGCTTGAGTTACAGGACTTCACCAGACCCATCAAAAAGCATACTTCCAGCAAGAGCAGTGATAGAGAGTATAGACAGGGTGAGAGGACCTTTTGACCCTTCAAACATAGAGTACTTGCAGAAAGACCTAAGCTGGAAAGTGTTCAAGAGCAATCTACCACCAACTTCCAAATGTATATATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.78

Weight (kDa)

5.96

Isoelectric Point (pI)

59.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7734 PF24869 87 - 174 5.4e-35 Domain of unknown function (DUF7734)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01755 AT2G01755
fragaria_vesca FvH4_4g33480
malus_domestica MD13G1019900.v1.1
prunus_persica Prupe.1G334100_v2.0.a1
pyrus_communis pycom13g01680
rosa_chinensis RchiOBHm_Chr4g0442791
rosa_laevigata RLG00000005984
rosa_multiflora Rmu_ssc0000204.1_g000020
rosa_roxburghii Rroxscaffold_5G00383570
rosa_rugosa Rorug04G0343100 Rorug04G0343200
rosa_samantha Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana Rw4G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 1 cut(s) 159
AfaI GTAC 2 cut(s) 112, 479
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 8 cut(s) 7, 89, 127, 136, 148, 352, 468, 511
AluBI AGCT 4 cut(s) 53, 131, 271, 498
AluI AGCT 4 cut(s) 53, 131, 271, 498
Alw26I GTCTC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 3 cut(s) 11, 143, 506
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 4 cut(s) 70, 205, 378, 457
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 72
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 136, 340
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 209, 403
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 452
BpiI GAAGAC 2 cut(s) 136, 340
Bpu10I CCTNAGC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 108, 332
Bse21I CCTNAGG 1 cut(s) 72
Bse3DI GCAATG 2 cut(s) 172, 321
BseGI GGATG 2 cut(s) 226, 328
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 2 cut(s) 172, 321
BseNI ACTGG 2 cut(s) 108, 332
BseRI GAGGAG 2 cut(s) 254, 306
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 2 cut(s) 172, 321
BsrI ACTGG 2 cut(s) 108, 332
BssSI CACGAG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 153
Bst6I CTCTTC 2 cut(s) 225, 367
BstAPI GCANNNNNTGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 72, 494
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 2 cut(s) 226, 328
BstHHI GCGC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 2 cut(s) 136, 340
Bsu36I CCTNAGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 226, 328
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 287, 339, 429
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 111, 478
CviAII CATG 4 cut(s) 63, 114, 311, 366
CviJI RGCY 5 cut(s) 53, 131, 271, 331, 498
CviKI_1 RGCY 5 cut(s) 53, 131, 271, 331, 498
CviQI GTAC 2 cut(s) 111, 478
DdeI CTNAG 2 cut(s) 72, 494
Eam1104I CTCTTC 2 cut(s) 225, 367
EarI CTCTTC 2 cut(s) 225, 367
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 452
Eco81I CCTNAGG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 76
FaeI CATG 4 cut(s) 66, 117, 314, 369
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 4 cut(s) 62, 113, 310, 365
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 233, 335
Fsp4HI GCNGC 1 cut(s) 180
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 179
Hin1II CATG 4 cut(s) 66, 117, 314, 369
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 2 cut(s) 89, 156
HphI GGTGA 4 cut(s) 70, 205, 378, 457
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 133, 183, 474
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 182, 314, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 72, 494
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 66, 117, 314, 369
HspAI GCGC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 1 cut(s) 166
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 76, 374
MboII GAAGA 6 cut(s) 136, 148, 236, 242, 340, 354
MfeI CAATTG 1 cut(s) 17
MluCI AATT 2 cut(s) 17, 25
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 91, 232, 284, 289, 443
MroXI GAANNNNTTC 3 cut(s) 11, 143, 506
MslI CAYNNNNRTG 1 cut(s) 61
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 174
NlaIII CATG 4 cut(s) 66, 117, 314, 369
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 117
PaeR7I CTCGAG 1 cut(s) 163
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 3 cut(s) 11, 143, 506
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
PspEI GGTNACC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PspXI VCTCGAGB 1 cut(s) 163
RsaI GTAC 2 cut(s) 112, 479
RsaNI GTAC 2 cut(s) 111, 478
RseI CAYNNNNRTG 1 cut(s) 61
SatI GCNGC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 479
SchI GAGTC 1 cut(s) 165
Sfr274I CTCGAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 163, 370
SmoI CTYRAG 2 cut(s) 163, 370
Sse9I AATT 2 cut(s) 17, 25
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 164
TasI AATT 2 cut(s) 17, 25
TatI WGTACW 2 cut(s) 110, 477
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 3 cut(s) 287, 339, 429
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 5 cut(s) 161, 237, 243, 299, 354
TspRI CASTG 3 cut(s) 287, 339, 429
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 452
XceI RCATGY 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 3 cut(s) 11, 143, 506
ZrmI AGTACT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.