Rroxscaffold_5G00383570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014618
Physical Location & Seq
Forward (+)
63179806 .. 63186606
6801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383570.1

Sequence Viewer

Length: 522 bp
ATGCCGGTCTCTCCCCCAGCTACATTACCATGTTCTCCTAAGGCCACCTCCTTTGAATCTGAAAACAGATGTTCCAGAACATGCTCTATCTTCATAGCTTTGAACAACGTCTTCAACCCACGAGTCTACTCGAGCATTCGTTGTGCTGCAAGACGAAGGGTGAGATATGATGACGATGATGATGGGGATGGAGATGAAGAGAATGAGGAGAGTAACAAGAAGATAGCATTGTTGGAGCTGTATAGTCAGAGTGTGAGAGGAGAAGCACTTATTGTTCATGCAATGGTGGATGACCAGCCAGTGGAAGTGCTTGTCTTCAAGGGGTTCTCTTCATGCTTGAGTTACAGGACTTCACCAGACCCCGTCAAAAAGCATACTTCCAGCAAGAGCAGTGATAGAGAGTATAGACAGGCGATTAACCCTACTAACCCTAGCAGCAAGGCTAGGATAGAACAAAGTGACAACGATTTTAAAACATTTAATGGGAATCTGTTGGAGCAAAAGAGACTCATTTTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.5

Weight (kDa)

6.16

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7734 PF24869 76 - 152 1.1e-15 Domain of unknown function (DUF7734)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01755 AT2G01755
fragaria_vesca FvH4_4g33480
malus_domestica MD13G1019900.v1.1
prunus_persica Prupe.1G334100_v2.0.a1
pyrus_communis pycom13g01680
rosa_chinensis RchiOBHm_Chr4g0442791
rosa_laevigata RLG00000005984
rosa_multiflora Rmu_ssc0000204.1_g000020
rosa_roxburghii Rroxscaffold_5G00383570
rosa_rugosa Rorug04G0343100 Rorug04G0343200
rosa_samantha Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana Rw4G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 301
AccI GTMKAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 4 cut(s) 56, 103, 115, 319
AluBI AGCT 3 cut(s) 20, 98, 238
AluI AGCT 3 cut(s) 20, 98, 238
Alw26I GTCTC 2 cut(s) 13, 499
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 146, 435
AsuHPI GGTGA 2 cut(s) 172, 345
AvaI CYCGRG 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 39
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 103, 307
BbvI GCAGC 2 cut(s) 133, 447
BccI CCATC 2 cut(s) 176, 182
BcoDI GTCTC 2 cut(s) 13, 499
BfaI CTAG 2 cut(s) 432, 444
BisI GCNGC 2 cut(s) 147, 436
BlsI GCNGC 2 cut(s) 148, 437
BmeT110I CYCGRG 1 cut(s) 130
BpiI GAAGAC 2 cut(s) 103, 307
BpuEI CTTGAG 1 cut(s) 358
BsaI GGTCTC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 288
BseGI GGATG 2 cut(s) 193, 295
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 2 cut(s) 221, 273
BseXI GCAGC 2 cut(s) 133, 447
BseYI CCCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 2 cut(s) 13, 499
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 130
BspANI GGCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 4
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 192, 334
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 193, 295
BstMAI GTCTC 2 cut(s) 13, 499
BstNSI RCATGY 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 133, 447
BstV2I GAAGAC 2 cut(s) 103, 307
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 193, 295
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 306, 397
Cfr10I RCCGGY 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 4 cut(s) 30, 81, 278, 333
CviJI RGCY 6 cut(s) 20, 44, 98, 238, 298, 443
CviKI_1 RGCY 6 cut(s) 20, 44, 98, 238, 298, 443
DdeI CTNAG 1 cut(s) 39
DraI TTTAAA 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 192, 334
EarI CTCTTC 2 cut(s) 192, 334
Eco31I GGTCTC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 130
FaeI CATG 4 cut(s) 33, 84, 281, 336
FaiI YATR 9 cut(s) 31, 82, 95, 168, 243, 279, 334, 375, 405
FatI CATG 4 cut(s) 29, 80, 277, 332
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 147, 436
FokI GGATG 2 cut(s) 200, 302
Fsp4HI GCNGC 2 cut(s) 147, 436
FspBI CTAG 2 cut(s) 432, 444
GluI GCNGC 2 cut(s) 147, 436
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 44
HapII CCGG 1 cut(s) 5
Hin1II CATG 4 cut(s) 33, 84, 281, 336
HinfI GANTC 4 cut(s) 56, 123, 487, 507
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 172, 345
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 61, 249
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 149, 281
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 33, 84, 281, 336
LmnI GCTCC 2 cut(s) 235, 496
LpnPI CCDG 9 cut(s) 18, 30, 88, 308, 312, 331, 369, 394, 395
Lsp1109I GCAGC 2 cut(s) 133, 447
MaeI CTAG 2 cut(s) 432, 444
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 212, 341, 458
MboII GAAGA 6 cut(s) 82, 103, 209, 232, 307, 321
MlyI GAGTC 2 cut(s) 132, 501
MmeI TCCRAC 2 cut(s) 213, 474
MnlI CCTC 3 cut(s) 58, 199, 251
MseI TTAA 3 cut(s) 417, 471, 480
MslI CAYNNNNRTG 1 cut(s) 28
MspI CCGG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 135
NlaIII CATG 4 cut(s) 33, 84, 281, 336
NmuCI GTSAC 1 cut(s) 458
NspI RCATGY 1 cut(s) 84
PaeR7I CTCGAG 1 cut(s) 130
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 56, 487
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 2 cut(s) 148, 437
PleI GAGTC 2 cut(s) 131, 501
PpsI GAGTC 2 cut(s) 131, 501
PspFI CCCAGC 1 cut(s) 16
PspXI VCTCGAGB 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 28
SaqAI TTAA 3 cut(s) 417, 471, 480
SatI GCNGC 2 cut(s) 147, 436
SchI GAGTC 2 cut(s) 132, 501
SetI ASST 5 cut(s) 22, 50, 100, 111, 240
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 28
SmlI CTYRAG 2 cut(s) 130, 337
SmoI CTYRAG 2 cut(s) 130, 337
SspMI CTAG 2 cut(s) 432, 444
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 131
TfiI GAWTC 2 cut(s) 56, 487
Tru1I TTAA 3 cut(s) 417, 471, 480
Tru9I TTAA 3 cut(s) 417, 471, 480
TscAI CASTG 2 cut(s) 306, 397
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 146, 435
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 4 cut(s) 82, 210, 266, 321
TspRI CASTG 2 cut(s) 306, 397
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 301
XceI RCATGY 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 2 cut(s) 432, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.