Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0014618

Physical Location & Seq

Genomic Coordinates Reverse (-)

84125 .. 84802

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgttgaagcacttccaattgggaaattggactatgctggtctctcccccagctacattaccatgttttcctaaggttacctcctttgaatctgaaaacagatgttccagaacatgctttaccttcaaagctttgaacaatgtcttcaacccacgagtctactcgagcattcgttgtgctgcaagacgaagggtgagatatgatgacgatgatgatggggatggagatgaagagaatgaggagaataacaaggaaatagcattgttggagctgtatagtcagagtgtgagaggagaagcacttattgttcacgcaatggtggatgaccagccagtggaagtgcttgtcttcaaggggttctcttcatgcttgagttacaggacttcaccagacccatcaaaaagcatacttccagcaagagcagtgatagagagtatagacagggtgagaggaccttttgacccttcaaacatagagtacttgcagaaagacctaagctggaaagtgttcaagagcaatctaccacccaacttccaaatgtatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.84

Weight (kDa)

5.48

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01755 AT2G01755
fragaria_vesca	FvH4_4g33480
malus_domestica	MD13G1019900.v1.1
prunus_persica	Prupe.1G334100_v2.0.a1
pyrus_communis	pycom13g01680
rosa_chinensis	RchiOBHm_Chr4g0442791
rosa_laevigata	RLG00000005984
rosa_multiflora	Rmu_ssc0000204.1_g000020
rosa_roxburghii	Rroxscaffold_5G00383570
rosa_rugosa	Rorug04G0343100 Rorug04G0343200
rosa_samantha	Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana	Rw4G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	8 cut(s)	7, 89, 127, 136, 148, 352, 468, 511
AluBI	AGCT	4 cut(s)	53, 131, 271, 498
AluI	AGCT	4 cut(s)	53, 131, 271, 498
Alw26I	GTCTC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	179
Asp700I	GAANNNNTTC	2 cut(s)	11, 506
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	205, 378, 457
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	72
BauI	CACGAG	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	136, 340
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	3 cut(s)	209, 215, 403
BcoDI	GTCTC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	452
BpiI	GAAGAC	2 cut(s)	136, 340
Bpu10I	CCTNAGC	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	226, 328
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	254, 306
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	332
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst6I	CTCTTC	2 cut(s)	225, 367
BstDEI	CTNAG	2 cut(s)	72, 494
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	226, 328
BstMAI	GTCTC	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	2 cut(s)	136, 340
Bsu36I	CCTNAGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	226, 328
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	339, 429
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	3 cut(s)	63, 114, 366
CviJI	RGCY	5 cut(s)	53, 131, 271, 331, 498
CviKI_1	RGCY	5 cut(s)	53, 131, 271, 331, 498
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	72, 494
Eam1104I	CTCTTC	2 cut(s)	225, 367
EarI	CTCTTC	2 cut(s)	225, 367
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	76
FaeI	CATG	3 cut(s)	66, 117, 369
FatI	CATG	3 cut(s)	62, 113, 365
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	233, 335
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
GsaI	CCCAGC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	66, 117, 369
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	2 cut(s)	89, 156
HphI	GGTGA	3 cut(s)	205, 378, 457
Hpy166II	GTNNAC	2 cut(s)	160, 310
Hpy188I	TCNGA	2 cut(s)	94, 282
Hpy188III	TCNNGA	2 cut(s)	108, 511
Hpy8I	GTNNAC	2 cut(s)	160, 310
HpyAV	CCTTC	3 cut(s)	133, 183, 474
HpyCH4V	TGCA	2 cut(s)	182, 484
HpyF3I	CTNAG	2 cut(s)	72, 494
Hsp92II	CATG	3 cut(s)	66, 117, 369
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	76, 374
MboII	GAAGA	4 cut(s)	136, 242, 340, 354
MfeI	CAATTG	1 cut(s)	17
MluCI	AATT	2 cut(s)	17, 25
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	91, 232, 284, 443
MroXI	GAANNNNTTC	2 cut(s)	11, 506
MslI	CAYNNNNRTG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	168
NlaIII	CATG	3 cut(s)	66, 117, 369
NspI	RCATGY	1 cut(s)	117
PaeR7I	CTCGAG	1 cut(s)	163
PctI	GAATGC	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	11, 506
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
PspEI	GGTNACC	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PspXI	VCTCGAGB	1 cut(s)	163
PsrI	GAACNNNNNNTAC	2 cut(s)	103, 135
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	61
SatI	GCNGC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	452
ScaI	AGTACT	1 cut(s)	479
SchI	GAGTC	1 cut(s)	165
SetI	ASST	9 cut(s)	55, 78, 83, 125, 133, 273, 457, 495, 500
Sfr274I	CTCGAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	61
SmlI	CTYRAG	2 cut(s)	163, 370
SmoI	CTYRAG	2 cut(s)	163, 370
Sse9I	AATT	2 cut(s)	17, 25
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	17, 25
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	2 cut(s)	339, 429
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	243, 354
TspRI	CASTG	2 cut(s)	339, 429
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	452
XceI	RCATGY	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	2 cut(s)	11, 506
ZrmI	AGTACT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.