Rorug04G0343100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014618
Physical Location & Seq
Reverse (-)
51543480 .. 51544288
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0343100.1

Sequence Viewer

Length: 720 bp
ATGGAACTACAACAACAGCAACCAACAGCGGAGGGAGGAAACACCCAAGCAGCCGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCTATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

25.44

Weight (kDa)

4.97

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01755 AT2G01755
fragaria_vesca FvH4_4g33480
malus_domestica MD13G1019900.v1.1
prunus_persica Prupe.1G334100_v2.0.a1
pyrus_communis pycom13g01680
rosa_chinensis RchiOBHm_Chr4g0442791
rosa_laevigata RLG00000005984
rosa_multiflora Rmu_ssc0000204.1_g000020
rosa_roxburghii Rroxscaffold_5G00383570
rosa_rugosa Rorug04G0343100 Rorug04G0343200
rosa_samantha Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana Rw4G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 588
AccB7I CCANNNNNTGG 1 cut(s) 413
AccIII TCCGGA 1 cut(s) 704
AciI CCGC 2 cut(s) 29, 654
AclI AACGTT 1 cut(s) 675
AclWI GGATC 7 cut(s) 141, 330, 343, 378, 391, 424, 459
AcyI GRCGYC 1 cut(s) 585
AfaI GTAC 2 cut(s) 91, 328
AfiI CCNNNNNNNGG 3 cut(s) 329, 413, 575
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 551
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 3 cut(s) 92, 322, 540
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 4 cut(s) 199, 410, 688, 710
AluI AGCT 4 cut(s) 199, 410, 688, 710
Alw21I GWGCWC 3 cut(s) 177, 576, 690
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 572
AlwI GGATC 7 cut(s) 141, 330, 343, 378, 391, 424, 459
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 704
AoxI GGCC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 572
ApeKI GCWGC 3 cut(s) 50, 293, 710
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
AseI ATTAAT 1 cut(s) 471
Asp700I GAANNNNTTC 2 cut(s) 316, 555
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
BaeGI GKGCMC 3 cut(s) 164, 306, 576
BamHI GGATCC 2 cut(s) 335, 383
BanII GRGCYC 2 cut(s) 262, 690
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 3 cut(s) 177, 576, 690
BbvI GCAGC 3 cut(s) 62, 280, 697
BccI CCATC 3 cut(s) 395, 452, 709
BceAI ACGGC 2 cut(s) 72, 592
BciT130I CCWGG 3 cut(s) 94, 324, 542
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 3 cut(s) 315, 444, 718
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 711
BlpI GCTNAGC 1 cut(s) 689
BlsI GCNGC 3 cut(s) 52, 295, 712
Bme1390I CCNGG 3 cut(s) 94, 324, 542
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 6 cut(s) 245, 337, 358, 385, 439, 487
BmrFI CCNGG 3 cut(s) 94, 324, 542
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 3 cut(s) 93, 179, 522
Bpu10I CCTNAGC 1 cut(s) 649
Bpu1102I GCTNAGC 1 cut(s) 689
BpuEI CTTGAG 3 cut(s) 113, 282, 704
BsaHI GRCGYC 1 cut(s) 585
BsaJI CCNNGG 2 cut(s) 306, 612
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 413, 575
Bse1I ACTGG 5 cut(s) 205, 334, 367, 376, 505
BseAI TCCGGA 1 cut(s) 704
BseBI CCWGG 3 cut(s) 94, 324, 542
BseDI CCNNGG 2 cut(s) 306, 612
BseGI GGATG 2 cut(s) 512, 701
BseLI CCNNNNNNNGG 3 cut(s) 329, 413, 575
BseMII CTCAG 2 cut(s) 663, 703
BseNI ACTGG 5 cut(s) 205, 334, 367, 376, 505
BseRI GAGGAG 2 cut(s) 543, 546
BseSI GKGCMC 3 cut(s) 164, 306, 576
BseXI GCAGC 3 cut(s) 62, 280, 697
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 3 cut(s) 177, 576, 690
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 705
BslI CCNNNNNNNGG 3 cut(s) 329, 413, 575
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 576, 690
Bsp13I TCCGGA 1 cut(s) 704
Bsp143I GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
Bsp1720I GCTNAGC 1 cut(s) 689
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 29, 654
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 662, 702
BspEI TCCGGA 1 cut(s) 704
BspLI GGNNCC 6 cut(s) 245, 337, 358, 385, 439, 487
BspPI GGATC 7 cut(s) 141, 330, 343, 378, 391, 424, 459
BsrI ACTGG 5 cut(s) 205, 334, 367, 376, 505
BssECI CCNNGG 2 cut(s) 306, 612
BssMI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
BssNI GRCGYC 1 cut(s) 585
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 542
Bst4CI ACNGT 1 cut(s) 665
Bst6I CTCTTC 2 cut(s) 272, 561
BstACI GRCGYC 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 649, 689
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 593
BstF5I GGATG 2 cut(s) 512, 701
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 9 cut(s) 115, 136, 189, 338, 346, 386, 419, 467, 538
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
BstNI CCWGG 3 cut(s) 94, 324, 542
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 593
BstSCI CCNGG 3 cut(s) 92, 322, 540
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 576
BstV1I GCAGC 3 cut(s) 62, 280, 697
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BstYI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 512, 701
BtsIMutI CAGTG 2 cut(s) 360, 670
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 3 cut(s) 357, 404, 438
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 649, 689
DpnI GATC 9 cut(s) 114, 135, 188, 337, 345, 385, 418, 466, 537
DpnII GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
Eam1104I CTCTTC 2 cut(s) 272, 561
EarI CTCTTC 2 cut(s) 272, 561
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 690
Eco47I GGWCC 2 cut(s) 357, 438
Eco53kI GAGCTC 1 cut(s) 688
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 593
EcoICRI GAGCTC 1 cut(s) 688
EcoO65I GGTNACC 1 cut(s) 593
EcoRII CCWGG 3 cut(s) 92, 322, 540
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 690
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 4 cut(s) 71, 210, 216, 308
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 711
FokI GGATG 2 cut(s) 499, 688
FriOI GRGCYC 2 cut(s) 262, 690
Fsp4HI GCNGC 3 cut(s) 51, 294, 711
FspBI CTAG 3 cut(s) 315, 444, 718
GlaI GCGC 1 cut(s) 625
GluI GCNGC 3 cut(s) 51, 294, 711
GsuI CTGGAG 3 cut(s) 93, 179, 522
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 54, 705
HhaI GCGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HinfI GANTC 3 cut(s) 100, 123, 494
HpaII CCGG 2 cut(s) 54, 705
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 3 cut(s) 360, 441, 574
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 683, 705
Hpy8I GTNNAC 3 cut(s) 360, 441, 574
HpyAV CCTTC 1 cut(s) 611
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 2 cut(s) 585, 675
HpyCH4V TGCA 3 cut(s) 285, 520, 574
HpyF3I CTNAG 2 cut(s) 649, 689
HpySE526I ACGT 2 cut(s) 585, 675
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 624
Kpn2I TCCGGA 1 cut(s) 704
Kzo9I GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 3 cut(s) 62, 280, 697
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 444, 718
MaeII ACGT 2 cut(s) 585, 675
MaeIII GTNAC 3 cut(s) 593, 632, 656
MalI GATC 9 cut(s) 114, 135, 188, 337, 345, 385, 418, 466, 537
MboI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
MboII GAAGA 3 cut(s) 289, 548, 613
MflI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 576, 690
MluCI AATT 3 cut(s) 349, 397, 430
MroI TCCGGA 1 cut(s) 704
MroXI GAANNNNTTC 2 cut(s) 316, 555
MseI TTAA 2 cut(s) 156, 471
MspA1I CMGCKG 3 cut(s) 29, 199, 410
MspI CCGG 2 cut(s) 54, 705
MspR9I CCNGG 3 cut(s) 94, 324, 542
MvaI CCWGG 3 cut(s) 94, 324, 542
NcoI CCATGG 1 cut(s) 306
NdeII GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 6 cut(s) 245, 337, 358, 385, 439, 487
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PdmI GAANNNNTTC 2 cut(s) 316, 555
PfeI GAWTC 3 cut(s) 100, 123, 494
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 3 cut(s) 52, 295, 712
PscI ACATGT 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 690
Psp1406I AACGTT 1 cut(s) 675
Psp6I CCWGG 3 cut(s) 92, 322, 540
PspEI GGTNACC 1 cut(s) 593
PspGI CCWGG 3 cut(s) 92, 322, 540
PspN4I GGNNCC 6 cut(s) 245, 337, 358, 385, 439, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 156, 471
SatI GCNGC 3 cut(s) 51, 294, 711
Sau3AI GATC 9 cut(s) 112, 133, 186, 335, 343, 383, 416, 464, 535
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 3 cut(s) 94, 324, 542
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 576, 690
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 683
SmoI CTYRAG 4 cut(s) 128, 261, 297, 683
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 3 cut(s) 349, 397, 430
SsiI CCGC 2 cut(s) 29, 654
SspMI CTAG 3 cut(s) 315, 444, 718
SstI GAGCTC 1 cut(s) 690
StyD4I CCNGG 3 cut(s) 92, 322, 540
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 2 cut(s) 588, 678
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 3 cut(s) 349, 397, 430
TfiI GAWTC 3 cut(s) 100, 123, 494
Tru1I TTAA 2 cut(s) 156, 471
Tru9I TTAA 2 cut(s) 156, 471
TscAI CASTG 2 cut(s) 367, 670
TseI GCWGC 3 cut(s) 50, 293, 710
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 367, 670
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 2 cut(s) 357, 438
VspI ATTAAT 1 cut(s) 471
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 555
XspI CTAG 3 cut(s) 315, 444, 718
ZraI GACGTC 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.