RchiOBHm_Chr4g0442791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014618
Physical Location & Seq
Forward (+)
64224511 .. 64225468
958 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41053

Sequence Viewer

Length: 552 bp
ATGTTGAAGCACTTCCAATTGGGAAATTGGACTATGCTGGTCTCTCCCCCAGCTACATTACCATGTTTTCCTAAGGTTACCTCCTTTGAATCTGAAAACAGATGTTCCAGAACATGCTTTACCTTCAAAGCAGCTTTGAACAATGTCTTCAACCCACGAGTCTACTCGAGCATTCGTTGTGCTGCAAGACGAAGGGTGAGATATGATGACGATGATGATGGGGATGGAGATGAAGAGAATGAGGAGAATAACAAGGAGATAGCATTGTTGGAGCTGTATAGTCAGAGTGTGAGAGGAGAAGCACTTATTGTTCACGCAATGGTGGATGACCAGCCAGTGGAAGTGCTTGTCTTCAAGGGGTTCTCTTCATGCTTGAGTTACAAGACTTCACCAGACCCATCAAAAAGCATACTTCCAGCAAGAGCAGTGATAGAGAGTATAGACAGGGTGAGAGGACCTTTTGACCCTTCAAACATAGAGTACTTGCAGAAAGACCTAAGCTGGAAAGTGTTCAAGAGCAATCTACCACCCAACTTCCAAATGTATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.88

Weight (kDa)

5.48

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7734 PF24869 88 - 175 1.6e-35 Domain of unknown function (DUF7734)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014618)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01755 AT2G01755
fragaria_vesca FvH4_4g33480
malus_domestica MD13G1019900.v1.1
prunus_persica Prupe.1G334100_v2.0.a1
pyrus_communis pycom13g01680
rosa_chinensis RchiOBHm_Chr4g0442791
rosa_laevigata RLG00000005984
rosa_multiflora Rmu_ssc0000204.1_g000020
rosa_roxburghii Rroxscaffold_5G00383570
rosa_rugosa Rorug04G0343100 Rorug04G0343200
rosa_samantha Rh4AG395700 Rh4BG408400 Rh4CG424200 Rh4DG402600
rosa_wichuraiana Rw4G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AccI GTMKAC 1 cut(s) 162
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 8 cut(s) 7, 89, 127, 139, 151, 355, 471, 514
AluBI AGCT 4 cut(s) 53, 134, 274, 501
AluI AGCT 4 cut(s) 53, 134, 274, 501
Alw26I GTCTC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 131, 182
Asp700I GAANNNNTTC 2 cut(s) 11, 509
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 3 cut(s) 208, 381, 460
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 1 cut(s) 455
AxyI CCTNAGG 1 cut(s) 72
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 139, 343
BbvI GCAGC 2 cut(s) 143, 169
BccI CCATC 3 cut(s) 212, 218, 406
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 2 cut(s) 132, 183
BlsI GCNGC 2 cut(s) 133, 184
BmcAI AGTACT 1 cut(s) 482
Bme18I GGWCC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 455
BpiI GAAGAC 2 cut(s) 139, 343
Bpu10I CCTNAGC 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 394
BsaI GGTCTC 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 335
Bse21I CCTNAGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 324
BseGI GGATG 2 cut(s) 229, 331
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 257, 309
BseXI GCAGC 2 cut(s) 143, 169
BseYI CCCAGC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 335
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 228, 370
BstDEI CTNAG 2 cut(s) 72, 497
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 2 cut(s) 229, 331
BstMAI GTCTC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 143, 169
BstV2I GAAGAC 2 cut(s) 139, 343
Bsu36I CCTNAGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 229, 331
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 342, 432
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 481
CviAII CATG 3 cut(s) 63, 114, 369
CviJI RGCY 5 cut(s) 53, 134, 274, 334, 501
CviKI_1 RGCY 5 cut(s) 53, 134, 274, 334, 501
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 2 cut(s) 72, 497
Eam1104I CTCTTC 2 cut(s) 228, 370
EarI CTCTTC 2 cut(s) 228, 370
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 455
Eco81I CCTNAGG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 166
Eco91I GGTNACC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 76
FaeI CATG 3 cut(s) 66, 117, 372
FatI CATG 3 cut(s) 62, 113, 368
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 132, 183
FokI GGATG 2 cut(s) 236, 338
Fsp4HI GCNGC 2 cut(s) 132, 183
GluI GCNGC 2 cut(s) 132, 183
GsaI CCCAGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 66, 117, 372
HinfI GANTC 2 cut(s) 89, 159
HphI GGTGA 3 cut(s) 208, 381, 460
Hpy166II GTNNAC 2 cut(s) 163, 313
Hpy188I TCNGA 2 cut(s) 94, 285
Hpy188III TCNNGA 2 cut(s) 108, 514
Hpy8I GTNNAC 2 cut(s) 163, 313
HpyAV CCTTC 3 cut(s) 133, 186, 477
HpyCH4V TGCA 2 cut(s) 185, 487
HpyF3I CTNAG 2 cut(s) 72, 497
Hsp92II CATG 3 cut(s) 66, 117, 372
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 9 cut(s) 23, 63, 121, 344, 348, 405, 429, 430, 487
Lsp1109I GCAGC 2 cut(s) 143, 169
MaeIII GTNAC 2 cut(s) 76, 377
MboII GAAGA 4 cut(s) 139, 245, 343, 357
MfeI CAATTG 1 cut(s) 17
MluCI AATT 2 cut(s) 17, 25
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 91, 235, 287, 446
MroXI GAANNNNTTC 2 cut(s) 11, 509
MslI CAYNNNNRTG 1 cut(s) 61
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 171
NlaIII CATG 3 cut(s) 66, 117, 372
NspI RCATGY 1 cut(s) 117
PaeR7I CTCGAG 1 cut(s) 166
PctI GAATGC 1 cut(s) 171
PdmI GAANNNNTTC 2 cut(s) 11, 509
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 2 cut(s) 133, 184
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
PspEI GGTNACC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 455
PspPPI RGGWCCY 1 cut(s) 455
PspXI VCTCGAGB 1 cut(s) 166
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 61
SatI GCNGC 2 cut(s) 132, 183
Sau96I GGNCC 1 cut(s) 455
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 1 cut(s) 168
SetI ASST 9 cut(s) 55, 78, 83, 125, 136, 276, 460, 498, 503
Sfr274I CTCGAG 1 cut(s) 166
SinI GGWCC 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 166, 373
SmoI CTYRAG 2 cut(s) 166, 373
Sse9I AATT 2 cut(s) 17, 25
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 17, 25
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 2 cut(s) 342, 432
TseI GCWGC 2 cut(s) 131, 182
TspDTI ATGAA 2 cut(s) 246, 357
TspRI CASTG 2 cut(s) 342, 432
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 455
XceI RCATGY 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 2 cut(s) 11, 509
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.