AT2G02410

YacP-like NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003444
Physical Location & Seq
Forward (+)
632634 .. 634994
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02410.7

Sequence Viewer

Length: 927 bp
ATGAAGACCGCCGGAGCGCCGCCGCAGAGAGGTGGTTCCTCTTCCTCCTCCGCCGTATACTTTAACTGGTCTTCATCATCTTGTTCTTACGATAGCTGTAGAGTTTTGGTGGTGAAGATGGGAGGAAAAAGCAAGAAGCCTCATCAATCTTCTTCTTTTAAGGAGTCAGAGCCAGAACCACCGAGAATCAAATCCAATGTTAAGCATAACTTGCAGCTTCTCAAGTTATGGAAGGAGTTTCAGAGCAGAGGATCTGGCATGGCTAAGCCAGCGACTAGTTACAGGAAGAAGAAAGTAGAGAAAGACGAGTTACCGGATGATAGCGAGCTCTACCGGGATCCTACAAATACGCTTTACTACACGAACCAAGGTCTATTGGATGACGCAGTTCCGGTTTTGCTTGTTGATGGTTATAATGTGTGTGGATATTGGATGAAGTTAAAGAAACATTTCATGAAAGGAAGGCTTGACGTTGCTCGGCAGAAGTTAGTTGATGAACTTGTGTCCTTCAGTATGGTTAAAGAGGTTAAGGTAGTGGTTGTGTTTGATGCTCTCATGTCTGGTCTTCCTACTCACAAGGAAGACTTTGCAGGTGTTGATGTGATTTTCTCAGGAGAAACTTGTGCTGACGCTTGGATTGAAAAGGAGGTGGTTGCATTGAGAGAAGATGGATGCCCCAAGGTTTGGGTTGTAACATCTGATGTCTGTCAACAACAAGCAGCACATGGAGCGGGAGCTTATATTTGGAGTAGCAAGGCATTGGTTTCTGAGATTAAATCGATGCATAAGGAGGTTGAGAAAATGATGCAAGAAACAAGGTCAACATCTTTCCAAGGGAGATTGCTTAAACACAATCTTGATTCTGAAGTCGTTGATGCTCTTAAAGATCTTAGAGACAAATTATCAGAAAACGAAACAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN_YacP

Protein Analysis

308

Amino Acids

34.54

Weight (kDa)

8.7

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN_YacP PF05991 133 - 219 2.2e-23 YacP-like NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AarI CACCTGC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 581
AccB7I CCANNNNNTGG 1 cut(s) 684
AccBSI CCGCTC 1 cut(s) 731
AccI GTMKAC 1 cut(s) 57
AciI CCGC 5 cut(s) 9, 20, 23, 51, 731
AclWI GGATC 3 cut(s) 259, 332, 345
AcuI CTGAAG 2 cut(s) 493, 885
AfiI CCNNNNNNNGG 2 cut(s) 29, 684
AgsI TTSAA 1 cut(s) 641
AhlI ACTAGT 1 cut(s) 275
AluBI AGCT 4 cut(s) 96, 217, 328, 737
AluI AGCT 4 cut(s) 96, 217, 328, 737
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 888
AlwI GGATC 3 cut(s) 259, 332, 345
ApeKI GCWGC 2 cut(s) 214, 719
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 124
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 4 cut(s) 11, 63, 557, 588
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 226, 731
BccI CCATC 3 cut(s) 112, 401, 662
BceAI ACGGC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 888
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 581
BglII AGATCT 1 cut(s) 886
BisI GCNGC 4 cut(s) 20, 23, 215, 720
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 4 cut(s) 21, 24, 216, 721
Bme1390I CCNGG 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 37, 339
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 5 cut(s) 538, 662, 771, 795, 865
BpiI GAAGAC 4 cut(s) 11, 63, 557, 588
Bpu1102I GCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 335
Bsa29I ATCGAT 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 367, 678, 832
BsaWI WCCGGW 2 cut(s) 313, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 684
Bse1I ACTGG 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 779
BseDI CCNNGG 3 cut(s) 367, 678, 832
BseGI GGATG 4 cut(s) 322, 385, 438, 677
BseLI CCNNNNNNNGG 2 cut(s) 29, 684
BseMII CTCAG 2 cut(s) 624, 759
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 226, 731
BshVI ATCGAT 1 cut(s) 779
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 4 cut(s) 12, 314, 334, 392
BslI CCNNNNNNNGG 2 cut(s) 29, 684
BsmAI GTCTC 1 cut(s) 888
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 251, 337, 886
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 5 cut(s) 9, 20, 23, 51, 731
BspCNI CTCAG 2 cut(s) 623, 760
BspDI ATCGAT 1 cut(s) 779
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 37, 339
BspMI ACCTGC 1 cut(s) 581
BspPI GGATC 3 cut(s) 259, 332, 345
BsrBI CCGCTC 1 cut(s) 731
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 367, 678, 832
BssMI GATC 3 cut(s) 251, 337, 886
BssNAI GTATAC 1 cut(s) 58
BssT1I CCWWGG 3 cut(s) 367, 678, 832
Bst1107I GTATAC 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 270, 326
BstDEI CTNAG 4 cut(s) 264, 610, 768, 890
BstF5I GGATG 4 cut(s) 322, 385, 438, 677
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 3 cut(s) 254, 340, 889
BstMAI GTCTC 1 cut(s) 888
BstMBI GATC 3 cut(s) 251, 337, 886
BstMWI GCNNNNNNNGC 3 cut(s) 211, 269, 728
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 226, 731
BstV2I GAAGAC 4 cut(s) 11, 63, 557, 588
BstX2I RGATCY 3 cut(s) 251, 337, 886
BstYI RGATCY 3 cut(s) 251, 337, 886
BstZ17I GTATAC 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 779
BsuTUI ATCGAT 1 cut(s) 779
BtsCI GGATG 4 cut(s) 322, 385, 438, 677
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 2 cut(s) 270, 326
CciI TCATGA 1 cut(s) 453
CfoI GCGC 1 cut(s) 19
ClaI ATCGAT 1 cut(s) 779
CseI GACGC 2 cut(s) 392, 638
CviAII CATG 4 cut(s) 259, 454, 556, 725
CviJI RGCY 9 cut(s) 96, 139, 172, 217, 263, 268, 328, 466, 737
CviKI_1 RGCY 9 cut(s) 96, 139, 172, 217, 263, 268, 328, 466, 737
DdeI CTNAG 4 cut(s) 264, 610, 768, 890
DpnI GATC 3 cut(s) 253, 339, 888
DpnII GATC 3 cut(s) 251, 337, 886
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 3 cut(s) 367, 678, 832
Eco24I GRGCYC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 493, 885
EcoICRI GAGCTC 1 cut(s) 328
EcoT14I CCWWGG 3 cut(s) 367, 678, 832
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 3 cut(s) 367, 678, 832
FaeI CATG 4 cut(s) 262, 457, 559, 728
FalI AAGNNNNNCTT 6 cut(s) 194, 226, 450, 482, 569, 601
FatI CATG 4 cut(s) 258, 453, 555, 724
FauI CCCGC 1 cut(s) 724
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 20, 23, 215, 720
FokI GGATG 4 cut(s) 329, 392, 445, 684
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 4 cut(s) 20, 23, 215, 720
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 18
GluI GCNGC 4 cut(s) 20, 23, 215, 720
HaeII RGCGCY 1 cut(s) 20
HapII CCGG 4 cut(s) 12, 314, 334, 392
HgaI GACGC 2 cut(s) 392, 638
HhaI GCGC 1 cut(s) 19
Hin1II CATG 4 cut(s) 262, 457, 559, 728
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 2 cut(s) 710, 822
HindII GTYRAC 2 cut(s) 710, 822
HinfI GANTC 3 cut(s) 164, 186, 860
HpaII CCGG 4 cut(s) 12, 314, 334, 392
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 3 cut(s) 58, 710, 822
Hpy188I TCNGA 6 cut(s) 169, 243, 700, 769, 865, 907
Hpy188III TCNNGA 3 cut(s) 454, 612, 857
Hpy8I GTNNAC 3 cut(s) 58, 710, 822
HpyAV CCTTC 3 cut(s) 226, 456, 517
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 5 cut(s) 214, 590, 656, 784, 808
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 269, 728
HpyF3I CTNAG 4 cut(s) 264, 610, 768, 890
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 4 cut(s) 262, 457, 559, 728
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 251, 337, 886
LmnI GCTCC 3 cut(s) 14, 728, 734
Lsp1109I GCAGC 2 cut(s) 226, 731
LweI GCATC 5 cut(s) 538, 662, 771, 795, 865
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 3 cut(s) 278, 309, 691
MalI GATC 3 cut(s) 253, 339, 888
MbiI CCGCTC 1 cut(s) 731
MboI GATC 3 cut(s) 251, 337, 886
MflI RGATCY 3 cut(s) 251, 337, 886
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 1 cut(s) 899
MlyI GAGTC 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 9 cut(s) 63, 159, 201, 440, 519, 528, 774, 846, 882
MspI CCGG 4 cut(s) 12, 314, 334, 392
MspR9I CCNGG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 211, 269, 728
NciI CCSGG 1 cut(s) 335
NdeII GATC 3 cut(s) 251, 337, 886
NlaIII CATG 4 cut(s) 262, 457, 559, 728
NlaIV GGNNCC 2 cut(s) 37, 339
NmeAIII GCCGAG 1 cut(s) 457
NsiI ATGCAT 1 cut(s) 786
PagI TCATGA 1 cut(s) 453
PaqCI CACCTGC 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 186, 860
PflMI CCANNNNNTGG 1 cut(s) 684
PkrI GCNGC 4 cut(s) 21, 24, 216, 721
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PsiI TTATAA 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 37, 339
PsuI RGATCY 3 cut(s) 251, 337, 886
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 9 cut(s) 63, 159, 201, 440, 519, 528, 774, 846, 882
SatI GCNGC 4 cut(s) 20, 23, 215, 720
Sau3AI GATC 3 cut(s) 251, 337, 886
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 5 cut(s) 538, 662, 771, 795, 865
SfcI CTRYAG 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 1 cut(s) 899
SsiI CCGC 5 cut(s) 9, 20, 23, 51, 731
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 3 cut(s) 367, 678, 832
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 779
TasI AATT 1 cut(s) 899
TauI GCSGC 2 cut(s) 22, 25
TfiI GAWTC 2 cut(s) 186, 860
Tru1I TTAA 9 cut(s) 63, 159, 201, 440, 519, 528, 774, 846, 882
Tru9I TTAA 9 cut(s) 63, 159, 201, 440, 519, 528, 774, 846, 882
TseI GCWGC 2 cut(s) 214, 719
TspDTI ATGAA 6 cut(s) 17, 63, 442, 449, 470, 510
Van91I CCANNNNNTGG 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.