Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003339.1

Orthogroup ID

OG0003444

Physical Location & Seq

Genomic Coordinates Forward (+)

1109 .. 8669

Gene Structure 7561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgaaatcggcgacctcgtcgtccctactctttcttctgccacgtggcttctcttcttgctcttgtcacaagtttgttataatggccaagagcaagaacaagtctcagcagccacctttgggctctgagccaagtccacctcccaggattacatcaaacgttaggcagaacttgcagcttttgaagttatggaaggagttccaaaagagaaagactagcgcacctaagcattctactagttaccggagaaagaaggtgatcaaaggagatgttcctgaagatccagaactctatcgcgatcccaccacgactctctactatacaaaccagggttttgagaatgcggtgcctgttttgcttgttgatgggtacaatgtatgtgggtattgggccaagctgaagaaacattttgtgaatgggagacttgatatcgcgcgccagaagctgattgatgagcttgtaacttttagcatgcttagagaggtgaaggtggtagctgtatttgatgccatgatgtctggactacccacgcataaggaagattttgccggcgttgatgtcgttttctcaggtgaaacttgtgctgatgcgtggattgaaaaagaggttgcagctttaagggaggatggatgccctaaagtttgggttgtgacttctgatcatgttcagcagcacgcagcacatggagcaggagccttcatttggagcagcaaggcattgatttctgagattaaagcatcacagaaggaggttgagaggatgcttgaagaacacaggtctacttcttttcaagggaggttattaaagcacaatcttgactcagaagttgtagacgctctcaaggatcttagaacgaagttatctgaaactgaaccaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NYN_YacP

Protein Analysis

293

Amino Acids

33.0

Weight (kDa)

9.14

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410
fragaria_vesca	FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220
malus_domestica	MD15G1445500.v1.1
prunus_persica	Prupe.1G587400_v2.0.a1
pyrus_communis	pycom15g39240
rosa_chinensis	RchiOBHm_Chr7g0218321
rosa_laevigata	RLG00000002378
rosa_multiflora	Rmu_sc0003339.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241030
rosa_rugosa	Rorug07G0176700 Rorug07G0176800 Rorug07G0176900.1
rosa_samantha	Rh7AG318100 Rh7BG310000 Rh7CG334900 Rh7DG317200
rosa_wichuraiana	Rw7G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AasI	GACNNNNNNGTC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	346
AccI	GTMKAC	2 cut(s)	779, 831
AccII	CGCG	3 cut(s)	297, 434, 436
AciI	CCGC	1 cut(s)	344
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	3 cut(s)	275, 293, 852
AcoI	YGGCCR	1 cut(s)	84
AcuI	CTGAAG	2 cut(s)	297, 419
AcvI	CACGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	119, 702
AgsI	TTSAA	4 cut(s)	184, 599, 767, 791
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	143, 327
AluBI	AGCT	6 cut(s)	178, 397, 445, 457, 497, 614
AluI	AGCT	6 cut(s)	178, 397, 445, 457, 497, 614
Alw26I	GTCTC	2 cut(s)	108, 415
AlwI	GGATC	3 cut(s)	275, 293, 852
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	2 cut(s)	84, 390
ApeKI	GCWGC	6 cut(s)	109, 175, 611, 670, 677, 708
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	3 cut(s)	221, 436, 438
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	3 cut(s)	268, 496, 584
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	125
BbrPI	CACGTG	1 cut(s)	44
BbvI	GCAGC	6 cut(s)	121, 187, 623, 682, 689, 720
BccI	CCATC	2 cut(s)	359, 620
BciT130I	CCWGG	2 cut(s)	145, 329
BclI	TGATCA	2 cut(s)	258, 658
BcoDI	GTCTC	2 cut(s)	108, 415
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	2 cut(s)	216, 237
BisI	GCNGC	6 cut(s)	110, 176, 612, 671, 678, 709
BlsI	GCNGC	6 cut(s)	111, 177, 613, 672, 679, 710
Bme1390I	CCNGG	2 cut(s)	145, 329
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	348, 694
BmrFI	CCNGG	2 cut(s)	145, 329
BmsI	GCATC	5 cut(s)	496, 577, 620, 746, 750
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	824
BsaAI	YACGTR	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	143, 328
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 702
Bse118I	RCCGGY	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	145, 329
BseDI	CCNNGG	2 cut(s)	143, 328
BseGI	GGATG	3 cut(s)	631, 635, 765
BseLI	CCNNNNNNNGG	2 cut(s)	119, 702
BseMII	CTCAG	5 cut(s)	117, 119, 582, 717, 834
BsePI	GCGCGC	1 cut(s)	434
BseXI	GCAGC	6 cut(s)	121, 187, 623, 682, 689, 720
Bsh1236I	CGCG	3 cut(s)	297, 434, 436
BshFI	GGCC	2 cut(s)	86, 392
BshNI	GGYRCC	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	244, 549
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	2 cut(s)	119, 702
BsmAI	GTCTC	2 cut(s)	108, 415
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	2 cut(s)	229, 346
BsnI	GGCC	2 cut(s)	86, 392
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	258, 280, 298, 658, 844
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	86, 392
BspCNI	CTCAG	5 cut(s)	118, 118, 581, 718, 833
BspFNI	CGCG	3 cut(s)	297, 434, 436
BspLI	GGNNCC	2 cut(s)	348, 694
BspPI	GGATC	3 cut(s)	275, 293, 852
BspT107I	GGYRCC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	143, 328
BssHII	GCGCGC	1 cut(s)	434
BssMI	GATC	5 cut(s)	258, 280, 298, 658, 844
Bst2UI	CCWGG	2 cut(s)	145, 329
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	4 cut(s)	436, 473, 550, 675
BstDEI	CTNAG	8 cut(s)	105, 126, 225, 476, 568, 726, 820, 848
BstF5I	GGATG	3 cut(s)	631, 635, 765
BstFNI	CGCG	3 cut(s)	297, 434, 436
BstHHI	GCGC	3 cut(s)	221, 436, 438
BstKTI	GATC	5 cut(s)	261, 283, 301, 661, 847
BstMAI	GTCTC	2 cut(s)	108, 415
BstMBI	GATC	5 cut(s)	258, 280, 298, 658, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 355, 442, 686
BstNI	CCWGG	2 cut(s)	145, 329
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	2 cut(s)	143, 327
BstUI	CGCG	3 cut(s)	297, 434, 436
BstV1I	GCAGC	6 cut(s)	121, 187, 623, 682, 689, 720
BstX2I	RGATCY	2 cut(s)	280, 844
BstYI	RGATCY	2 cut(s)	280, 844
BsuRI	GGCC	2 cut(s)	86, 392
BtsCI	GGATG	3 cut(s)	631, 635, 765
BtuMI	TCGCGA	1 cut(s)	297
Cac8I	GCNNGC	4 cut(s)	436, 473, 550, 675
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	3 cut(s)	221, 436, 438
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	390
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	4 cut(s)	472, 511, 662, 683
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	8 cut(s)	105, 126, 225, 476, 568, 726, 820, 848
DpnI	GATC	5 cut(s)	260, 282, 300, 660, 846
DpnII	GATC	5 cut(s)	258, 280, 298, 658, 844
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	297, 419
Eco72I	CACGTG	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	143, 327
EcoRV	GATATC	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	4 cut(s)	475, 514, 665, 686
FaiI	YATR	9 cut(s)	80, 190, 321, 379, 473, 512, 534, 663, 684
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	471, 510, 661, 682
FbaI	TGATCA	2 cut(s)	258, 658
FblI	GTMKAC	2 cut(s)	779, 831
Fnu4HI	GCNGC	6 cut(s)	110, 176, 612, 671, 678, 709
FokI	GGATG	3 cut(s)	638, 642, 772
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	6 cut(s)	110, 176, 612, 671, 678, 709
FspBI	CTAG	2 cut(s)	216, 237
GlaI	GCGC	3 cut(s)	220, 435, 437
GluI	GCNGC	6 cut(s)	110, 176, 612, 671, 678, 709
HaeIII	GGCC	2 cut(s)	86, 392
HapII	CCGG	2 cut(s)	244, 549
HgaI	GACGC	1 cut(s)	842
HhaI	GCGC	3 cut(s)	221, 436, 438
Hin1II	CATG	4 cut(s)	475, 514, 665, 686
Hin6I	GCGC	3 cut(s)	219, 434, 436
HinP1I	GCGC	3 cut(s)	219, 434, 436
HinfI	GANTC	2 cut(s)	310, 818
HpaII	CCGG	2 cut(s)	244, 549
HphI	GGTGA	3 cut(s)	268, 496, 584
Hpy166II	GTNNAC	3 cut(s)	137, 780, 832
Hpy188I	TCNGA	5 cut(s)	127, 658, 727, 823, 865
Hpy188III	TCNNGA	5 cut(s)	275, 284, 296, 519, 815
Hpy8I	GTNNAC	3 cut(s)	137, 780, 832
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	187, 247, 481, 706, 739
HpyCH4IV	ACGT	2 cut(s)	43, 159
HpyCH4V	TGCA	2 cut(s)	175, 611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 355, 442, 686
HpyF3I	CTNAG	8 cut(s)	105, 126, 225, 476, 568, 726, 820, 848
HpySE526I	ACGT	2 cut(s)	43, 159
Hsp92II	CATG	4 cut(s)	475, 514, 665, 686
HspAI	GCGC	3 cut(s)	219, 434, 436
KroI	GCCGGC	1 cut(s)	548
KroNI	GCCGGC	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	258, 658
Kzo9I	GATC	5 cut(s)	258, 280, 298, 658, 844
LmnI	GCTCC	3 cut(s)	686, 692, 705
Lsp1109I	GCAGC	6 cut(s)	121, 187, 623, 682, 689, 720
LweI	GCATC	5 cut(s)	496, 577, 620, 746, 750
MaeI	CTAG	2 cut(s)	216, 237
MaeII	ACGT	2 cut(s)	43, 159
MaeIII	GTNAC	4 cut(s)	65, 239, 460, 649
MalI	GATC	5 cut(s)	260, 282, 300, 660, 846
MboI	GATC	5 cut(s)	258, 280, 298, 658, 844
MboII	GAAGA	6 cut(s)	26, 45, 290, 412, 551, 779
MflI	RGATCY	2 cut(s)	280, 844
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	86
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	304, 812
MnlI	CCTC	8 cut(s)	25, 150, 475, 598, 616, 742, 750, 789
Mox20I	TGGCCA	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	3 cut(s)	617, 732, 803
Msp20I	TGGCCA	1 cut(s)	86
MspI	CCGG	2 cut(s)	244, 549
MspR9I	CCNGG	2 cut(s)	145, 329
Mva1269I	GAATGC	2 cut(s)	229, 346
MvaI	CCWGG	2 cut(s)	145, 329
MvnI	CGCG	3 cut(s)	297, 434, 436
MwoI	GCNNNNNNNGC	4 cut(s)	172, 355, 442, 686
NaeI	GCCGGC	1 cut(s)	550
NdeII	GATC	5 cut(s)	258, 280, 298, 658, 844
NgoMIV	GCCGGC	1 cut(s)	548
NlaIII	CATG	4 cut(s)	475, 514, 665, 686
NlaIV	GGNNCC	2 cut(s)	348, 694
NmuCI	GTSAC	2 cut(s)	65, 649
NruI	TCGCGA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	475
PaeI	GCATGC	1 cut(s)	475
PauI	GCGCGC	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	2 cut(s)	229, 346
PdiI	GCCGGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	6 cut(s)	111, 177, 613, 672, 679, 710
PleI	GAGTC	2 cut(s)	304, 812
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	304, 812
Ppu21I	YACGTR	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	80
Psp1406I	AACGTT	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	143, 327
PspCI	CACGTG	1 cut(s)	44
PspGI	CCWGG	2 cut(s)	143, 327
PspN4I	GGNNCC	2 cut(s)	348, 694
PspPI	GGNCC	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	2 cut(s)	280, 844
PsyI	GACNNNGTC	1 cut(s)	16
PteI	GCGCGC	1 cut(s)	434
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	617, 732, 803
SatI	GCNGC	6 cut(s)	110, 176, 612, 671, 678, 709
Sau3AI	GATC	5 cut(s)	258, 280, 298, 658, 844
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	2 cut(s)	304, 812
ScrFI	CCNGG	2 cut(s)	145, 329
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	5 cut(s)	496, 577, 620, 746, 750
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
SpeI	ACTAGT	1 cut(s)	236
SphI	GCATGC	1 cut(s)	475
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	216, 237
StyD4I	CCNGG	2 cut(s)	143, 327
TaiI	ACGT	2 cut(s)	46, 162
Tru1I	TTAA	3 cut(s)	617, 732, 803
Tru9I	TTAA	3 cut(s)	617, 732, 803
TseFI	GTSAC	2 cut(s)	65, 649
TseI	GCWGC	6 cut(s)	109, 175, 611, 670, 677, 708
Tsp45I	GTSAC	2 cut(s)	65, 649
TspDTI	ATGAA	2 cut(s)	17, 688
Tth111I	GACNNNGTC	1 cut(s)	16
XceI	RCATGY	1 cut(s)	475
XmiI	GTMKAC	2 cut(s)	779, 831
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	2 cut(s)	216, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.