Rh7AG318100

YacP-like NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003444
Physical Location & Seq
Forward (+)
35877166 .. 35885909
8744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG318100.1

Sequence Viewer

Length: 744 bp
ATGAAATCGGCGACCTCGTCGTCCCTACTCTTTCTTCTGCCACGTGGCTTCTCTTCTTGCTCTTGTCACAAGTTTGTTATAATGGCCAAGAGCAAGAACAAGTCTCAGCAGCCACCTTCGGGCTCTGAGCCAAGTCCACCTCCCAGGATTACATCAAACGTTAGGCAGAACTTGCAGCTTTTGAAGTTATGGAAGGAGTTCCAAAAGAGAAAGACTAGCGCACCTAAGCATTCTACTAGTTACCGGAGAAAGAAGGTGATCAAGGGAGATGTTCCCGAAGATCCAGAACTCTATCGCGATCCCACCACGACTCTCTACTATACAAACCAGGGTTTTGAGAATGCGGTGCCTGTTTTGCTTGTTGATGGGTACAATGTATGTGGGTATTGGGCCAAGCTGAAGAAACATTTTGTGAATGGGAGACTTGATATCGCGCGCCAGAAGCTGATTGATGAGCTTGTAACTTTTAGCATGCTTAGAGAGGTGAAGGTGGTAGCTGTATTTGATGCCATGATGTCTGGACTACCCACGCATAAGGAAGATTTTGCCGGCGTTGATGTCGTTTTCTCAGGTGAAACTTGTGCTGATGCGTGGATTGAAAAAGAGGTTGCAGCTTTAAGGGAGGATGGATGCCCTAAAGTTTGGGTTGTGACTTCTGATCATGTTCAGCAGCACGCAGCACATGGAGCAGGAGCCTTCATTTGGAGCAGCAAGGCATTGATTTCTGAGGTGAGGCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN_YacP

Protein Analysis

247

Amino Acids

27.68

Weight (kDa)

9.21

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN_YacP PF05991 119 - 245 2.1e-35 YacP-like NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AasI GACNNNNNNGTC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 346
AccII CGCG 3 cut(s) 297, 434, 436
AciI CCGC 1 cut(s) 344
AclI AACGTT 1 cut(s) 159
AclWI GGATC 2 cut(s) 275, 293
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 419
AcvI CACGTG 1 cut(s) 44
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 119, 702
AgsI TTSAA 2 cut(s) 184, 599
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 2 cut(s) 143, 327
AluBI AGCT 6 cut(s) 178, 397, 445, 457, 497, 614
AluI AGCT 6 cut(s) 178, 397, 445, 457, 497, 614
Alw26I GTCTC 2 cut(s) 108, 415
AlwI GGATC 2 cut(s) 275, 293
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 2 cut(s) 84, 390
ApeKI GCWGC 6 cut(s) 109, 175, 611, 670, 677, 708
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 221, 436, 438
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 4 cut(s) 268, 496, 584, 742
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 125
BbrPI CACGTG 1 cut(s) 44
BbvI GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
BccI CCATC 2 cut(s) 359, 620
BciT130I CCWGG 2 cut(s) 145, 329
BclI TGATCA 2 cut(s) 258, 658
BcoDI GTCTC 2 cut(s) 108, 415
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 2 cut(s) 216, 237
BisI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
BlsI GCNGC 6 cut(s) 111, 177, 613, 672, 679, 710
Bme1390I CCNGG 2 cut(s) 145, 329
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 348, 694
BmrFI CCNGG 2 cut(s) 145, 329
BmsI GCATC 3 cut(s) 496, 577, 620
Bpu10I CCTNAGC 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 143, 328
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 702
Bse118I RCCGGY 1 cut(s) 548
BseBI CCWGG 2 cut(s) 145, 329
BseDI CCNNGG 2 cut(s) 143, 328
BseGI GGATG 2 cut(s) 631, 635
BseLI CCNNNNNNNGG 2 cut(s) 119, 702
BseMII CTCAG 4 cut(s) 117, 119, 582, 717
BsePI GCGCGC 1 cut(s) 434
BseXI GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
Bsh1236I CGCG 3 cut(s) 297, 434, 436
BshFI GGCC 2 cut(s) 86, 392
BshNI GGYRCC 1 cut(s) 346
BsiSI CCGG 2 cut(s) 244, 549
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 119, 702
BsmAI GTCTC 2 cut(s) 108, 415
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 2 cut(s) 229, 346
BsnI GGCC 2 cut(s) 86, 392
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 258, 280, 298, 658
Bsp68I TCGCGA 1 cut(s) 297
BspACI CCGC 1 cut(s) 344
BspANI GGCC 2 cut(s) 86, 392
BspCNI CTCAG 4 cut(s) 118, 118, 581, 718
BspFNI CGCG 3 cut(s) 297, 434, 436
BspLI GGNNCC 2 cut(s) 348, 694
BspPI GGATC 2 cut(s) 275, 293
BspT107I GGYRCC 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 2 cut(s) 143, 328
BssHII GCGCGC 1 cut(s) 434
BssMI GATC 4 cut(s) 258, 280, 298, 658
Bst2UI CCWGG 2 cut(s) 145, 329
Bst6I CTCTTC 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 4 cut(s) 436, 473, 550, 675
BstDEI CTNAG 6 cut(s) 105, 126, 225, 476, 568, 726
BstF5I GGATG 2 cut(s) 631, 635
BstFNI CGCG 3 cut(s) 297, 434, 436
BstHHI GCGC 3 cut(s) 221, 436, 438
BstKTI GATC 4 cut(s) 261, 283, 301, 661
BstMAI GTCTC 2 cut(s) 108, 415
BstMBI GATC 4 cut(s) 258, 280, 298, 658
BstMWI GCNNNNNNNGC 4 cut(s) 172, 355, 442, 686
BstNI CCWGG 2 cut(s) 145, 329
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 2 cut(s) 143, 327
BstUI CGCG 3 cut(s) 297, 434, 436
BstV1I GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 86, 392
BtsCI GGATG 2 cut(s) 631, 635
BtuMI TCGCGA 1 cut(s) 297
Cac8I GCNNGC 4 cut(s) 436, 473, 550, 675
CaiI CAGNNNCTG 1 cut(s) 445
CfoI GCGC 3 cut(s) 221, 436, 438
Cfr10I RCCGGY 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 390
Csp6I GTAC 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 5 cut(s) 472, 511, 662, 683, 737
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 6 cut(s) 105, 126, 225, 476, 568, 726
DpnI GATC 4 cut(s) 260, 282, 300, 660
DpnII GATC 4 cut(s) 258, 280, 298, 658
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 419
Eco72I CACGTG 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 143, 327
EcoRV GATATC 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 5 cut(s) 475, 514, 665, 686, 740
FaqI GGGAC 1 cut(s) 7
FatI CATG 5 cut(s) 471, 510, 661, 682, 736
FbaI TGATCA 2 cut(s) 258, 658
Fnu4HI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
FokI GGATG 2 cut(s) 638, 642
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
FspBI CTAG 2 cut(s) 216, 237
GlaI GCGC 3 cut(s) 220, 435, 437
GluI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
HaeIII GGCC 2 cut(s) 86, 392
HapII CCGG 2 cut(s) 244, 549
HhaI GCGC 3 cut(s) 221, 436, 438
Hin1II CATG 5 cut(s) 475, 514, 665, 686, 740
Hin6I GCGC 3 cut(s) 219, 434, 436
HinP1I GCGC 3 cut(s) 219, 434, 436
HinfI GANTC 1 cut(s) 310
HpaII CCGG 2 cut(s) 244, 549
HphI GGTGA 4 cut(s) 268, 496, 584, 742
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 3 cut(s) 127, 658, 727
Hpy188III TCNNGA 4 cut(s) 275, 284, 296, 519
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 126, 187, 247, 481, 706
HpyCH4IV ACGT 2 cut(s) 43, 159
HpyCH4V TGCA 2 cut(s) 175, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 355, 442, 686
HpyF3I CTNAG 6 cut(s) 105, 126, 225, 476, 568, 726
HpySE526I ACGT 2 cut(s) 43, 159
Hsp92II CATG 5 cut(s) 475, 514, 665, 686, 740
HspAI GCGC 3 cut(s) 219, 434, 436
KroI GCCGGC 1 cut(s) 548
KroNI GCCGGC 1 cut(s) 550
Ksp22I TGATCA 2 cut(s) 258, 658
Kzo9I GATC 4 cut(s) 258, 280, 298, 658
LmnI GCTCC 3 cut(s) 686, 692, 705
Lsp1109I GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
LweI GCATC 3 cut(s) 496, 577, 620
MaeI CTAG 2 cut(s) 216, 237
MaeII ACGT 2 cut(s) 43, 159
MaeIII GTNAC 4 cut(s) 65, 239, 460, 649
MalI GATC 4 cut(s) 260, 282, 300, 660
MboI GATC 4 cut(s) 258, 280, 298, 658
MboII GAAGA 5 cut(s) 26, 45, 290, 412, 551
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 7 cut(s) 25, 150, 475, 598, 616, 721, 726
Mox20I TGGCCA 1 cut(s) 86
MroNI GCCGGC 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 86
MseI TTAA 2 cut(s) 617, 742
Msp20I TGGCCA 1 cut(s) 86
MspI CCGG 2 cut(s) 244, 549
MspR9I CCNGG 2 cut(s) 145, 329
Mva1269I GAATGC 2 cut(s) 229, 346
MvaI CCWGG 2 cut(s) 145, 329
MvnI CGCG 3 cut(s) 297, 434, 436
MwoI GCNNNNNNNGC 4 cut(s) 172, 355, 442, 686
NaeI GCCGGC 1 cut(s) 550
NdeII GATC 4 cut(s) 258, 280, 298, 658
NgoMIV GCCGGC 1 cut(s) 548
NlaIII CATG 5 cut(s) 475, 514, 665, 686, 740
NlaIV GGNNCC 2 cut(s) 348, 694
NmuCI GTSAC 2 cut(s) 65, 649
NruI TCGCGA 1 cut(s) 297
NspI RCATGY 1 cut(s) 475
PaeI GCATGC 1 cut(s) 475
PauI GCGCGC 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 229, 346
PdiI GCCGGC 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 6 cut(s) 111, 177, 613, 672, 679, 710
PleI GAGTC 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 44
PsiI TTATAA 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 143, 327
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 2 cut(s) 143, 327
PspN4I GGNNCC 2 cut(s) 348, 694
PspPI GGNCC 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 16
PteI GCGCGC 1 cut(s) 434
RruI TCGCGA 1 cut(s) 297
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 2 cut(s) 617, 742
SatI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
Sau3AI GATC 4 cut(s) 258, 280, 298, 658
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 145, 329
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 3 cut(s) 496, 577, 620
SpeI ACTAGT 1 cut(s) 236
SphI GCATGC 1 cut(s) 475
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 216, 237
StyD4I CCNGG 2 cut(s) 143, 327
TaiI ACGT 2 cut(s) 46, 162
Tru1I TTAA 2 cut(s) 617, 742
Tru9I TTAA 2 cut(s) 617, 742
TseFI GTSAC 2 cut(s) 65, 649
TseI GCWGC 6 cut(s) 109, 175, 611, 670, 677, 708
Tsp45I GTSAC 2 cut(s) 65, 649
TspDTI ATGAA 2 cut(s) 17, 688
Tth111I GACNNNGTC 1 cut(s) 16
XceI RCATGY 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 216, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.