Rh7CG334900

YacP-like NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003444
Physical Location & Seq
Forward (+)
37284218 .. 37292024
7807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG334900.1

Sequence Viewer

Length: 882 bp
ATGAAATCGGCGACCTCGTCGTCCCTACTCTTTCTTCTGCCACGTGGCTTCTCTTCTTGCTCTTGTCACAAGTTTGTTATAATGGCCAAGAGCAAGAACAAGTCTCAGCAGCCACCTTCGGGCTCTGAGCCAAGTCCACCTCCCAGGATTACATCAAACGTTAGGCAGAACTTGCAGCTTTTGAAGTTATGGAAGGAGTTCCAAAAGAGAAAGACTAGCGCACCTAAGCATTCTACTAGTTACCGGAGAAAGAAGGTGATCAAGGGAGATGTTCCCGAAGATCCAGAACTCTATCGCGATCCCACCACGACTCTCTACTATACAAACCAGGGTTTTGAGAATGCGGTGCCTGTTTTGCTTGTTGATGGGTACAATGTATGTGGGTATTGGGCCAAGCTGAAGAAACATTTTGTGAATGGGAGACTTGATATCGCGCGCCAGAAGCTGATTGATGAGCTTGTAACTTTTAGCATGCTTAGAGAGGTGAAGGTGGTAGCTGTATTTGATGCCATGATGTCTGGACTACCCACGCACAAGGAAGATTTTGCTGGCGTTGATGTCGTTTTCTCAGGTGAAACTTGTGCTGATGCGTGGATTGAAAAAGAGGTTGCAGCTTTAAGGGAGGATGGATGCCCTAAAGTTTGGGTTGTGACTTCTGATCATGTTCAGCAGCACGCAGCACATGGAGCAGGAGCCTTCATTTGGAGCAGCAAGGCATTGATTTCTGAGATTAAAGCATCACAGAAGGAGGTTGAGAGGATGCTTGAAGAGCACAGGTCTACTTCTTTTCAAGGGAGGTTATTAAAGCACAATCTTGACTCAGAAGTTGTAGACGCTCTCAAGGATCTTAGAACGAAGTTATCTGAAACTGAACCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN_YacP

Protein Analysis

293

Amino Acids

32.98

Weight (kDa)

9.14

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN_YacP PF05991 119 - 284 5.2e-42 YacP-like NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AasI GACNNNNNNGTC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 346
AccI GTMKAC 2 cut(s) 779, 831
AccII CGCG 3 cut(s) 297, 434, 436
AciI CCGC 1 cut(s) 344
AclI AACGTT 1 cut(s) 159
AclWI GGATC 3 cut(s) 275, 293, 852
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 419
AcvI CACGTG 1 cut(s) 44
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 119, 702
AgsI TTSAA 4 cut(s) 184, 599, 767, 791
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 2 cut(s) 143, 327
AluBI AGCT 6 cut(s) 178, 397, 445, 457, 497, 614
AluI AGCT 6 cut(s) 178, 397, 445, 457, 497, 614
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 2 cut(s) 108, 415
AlwI GGATC 3 cut(s) 275, 293, 852
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 2 cut(s) 84, 390
ApeKI GCWGC 6 cut(s) 109, 175, 611, 670, 677, 708
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 3 cut(s) 221, 436, 438
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 268, 496, 584
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 125
BbrPI CACGTG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
BccI CCATC 2 cut(s) 359, 620
BciT130I CCWGG 2 cut(s) 145, 329
BclI TGATCA 2 cut(s) 258, 658
BcoDI GTCTC 2 cut(s) 108, 415
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 2 cut(s) 216, 237
BisI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
BlsI GCNGC 6 cut(s) 111, 177, 613, 672, 679, 710
Bme1390I CCNGG 2 cut(s) 145, 329
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 348, 694
BmrFI CCNGG 2 cut(s) 145, 329
BmsI GCATC 5 cut(s) 496, 577, 620, 746, 750
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 824
BsaAI YACGTR 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 143, 328
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 702
BseBI CCWGG 2 cut(s) 145, 329
BseDI CCNNGG 2 cut(s) 143, 328
BseGI GGATG 3 cut(s) 631, 635, 765
BseLI CCNNNNNNNGG 2 cut(s) 119, 702
BseMII CTCAG 5 cut(s) 117, 119, 582, 717, 834
BsePI GCGCGC 1 cut(s) 434
BseXI GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
Bsh1236I CGCG 3 cut(s) 297, 434, 436
BshFI GGCC 2 cut(s) 86, 392
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 774
BsiSI CCGG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 119, 702
BsmAI GTCTC 2 cut(s) 108, 415
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 2 cut(s) 229, 346
BsnI GGCC 2 cut(s) 86, 392
Bsp1286I GDGCHC 2 cut(s) 125, 774
Bsp143I GATC 5 cut(s) 258, 280, 298, 658, 844
Bsp68I TCGCGA 1 cut(s) 297
BspACI CCGC 1 cut(s) 344
BspANI GGCC 2 cut(s) 86, 392
BspCNI CTCAG 5 cut(s) 118, 118, 581, 718, 833
BspFNI CGCG 3 cut(s) 297, 434, 436
BspLI GGNNCC 2 cut(s) 348, 694
BspPI GGATC 3 cut(s) 275, 293, 852
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 143, 328
BssHII GCGCGC 1 cut(s) 434
BssMI GATC 5 cut(s) 258, 280, 298, 658, 844
Bst2UI CCWGG 2 cut(s) 145, 329
Bst6I CTCTTC 2 cut(s) 58, 762
BstAPI GCANNNNNTGC 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 4 cut(s) 436, 473, 550, 675
BstDEI CTNAG 8 cut(s) 105, 126, 225, 476, 568, 726, 820, 848
BstF5I GGATG 3 cut(s) 631, 635, 765
BstFNI CGCG 3 cut(s) 297, 434, 436
BstHHI GCGC 3 cut(s) 221, 436, 438
BstKTI GATC 5 cut(s) 261, 283, 301, 661, 847
BstMAI GTCTC 2 cut(s) 108, 415
BstMBI GATC 5 cut(s) 258, 280, 298, 658, 844
BstMWI GCNNNNNNNGC 5 cut(s) 172, 355, 442, 686, 769
BstNI CCWGG 2 cut(s) 145, 329
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 2 cut(s) 143, 327
BstUI CGCG 3 cut(s) 297, 434, 436
BstV1I GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
BstX2I RGATCY 2 cut(s) 280, 844
BstYI RGATCY 2 cut(s) 280, 844
BsuRI GGCC 2 cut(s) 86, 392
BtsCI GGATG 3 cut(s) 631, 635, 765
BtuMI TCGCGA 1 cut(s) 297
Cac8I GCNNGC 4 cut(s) 436, 473, 550, 675
CaiI CAGNNNCTG 1 cut(s) 445
CfoI GCGC 3 cut(s) 221, 436, 438
Cfr13I GGNCC 1 cut(s) 390
CseI GACGC 1 cut(s) 842
Csp6I GTAC 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 4 cut(s) 472, 511, 662, 683
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 8 cut(s) 105, 126, 225, 476, 568, 726, 820, 848
DpnI GATC 5 cut(s) 260, 282, 300, 660, 846
DpnII GATC 5 cut(s) 258, 280, 298, 658, 844
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 58, 762
EarI CTCTTC 2 cut(s) 58, 762
Eco24I GRGCYC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 419
Eco72I CACGTG 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 143, 327
EcoRV GATATC 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 4 cut(s) 475, 514, 665, 686
FaiI YATR 8 cut(s) 80, 190, 321, 379, 473, 512, 663, 684
FaqI GGGAC 1 cut(s) 7
FatI CATG 4 cut(s) 471, 510, 661, 682
FbaI TGATCA 2 cut(s) 258, 658
FblI GTMKAC 2 cut(s) 779, 831
Fnu4HI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
FokI GGATG 3 cut(s) 638, 642, 772
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
FspBI CTAG 2 cut(s) 216, 237
GlaI GCGC 3 cut(s) 220, 435, 437
GluI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
HaeIII GGCC 2 cut(s) 86, 392
HapII CCGG 1 cut(s) 244
HgaI GACGC 1 cut(s) 842
HhaI GCGC 3 cut(s) 221, 436, 438
Hin1II CATG 4 cut(s) 475, 514, 665, 686
Hin6I GCGC 3 cut(s) 219, 434, 436
HinP1I GCGC 3 cut(s) 219, 434, 436
HinfI GANTC 2 cut(s) 310, 818
HpaII CCGG 1 cut(s) 244
HphI GGTGA 3 cut(s) 268, 496, 584
Hpy166II GTNNAC 3 cut(s) 137, 780, 832
Hpy188I TCNGA 5 cut(s) 127, 658, 727, 823, 865
Hpy188III TCNNGA 5 cut(s) 275, 284, 296, 519, 815
Hpy8I GTNNAC 3 cut(s) 137, 780, 832
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 6 cut(s) 126, 187, 247, 481, 706, 739
HpyCH4IV ACGT 2 cut(s) 43, 159
HpyCH4V TGCA 2 cut(s) 175, 611
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 355, 442, 686, 769
HpyF3I CTNAG 8 cut(s) 105, 126, 225, 476, 568, 726, 820, 848
HpySE526I ACGT 2 cut(s) 43, 159
Hsp92II CATG 4 cut(s) 475, 514, 665, 686
HspAI GCGC 3 cut(s) 219, 434, 436
Ksp22I TGATCA 2 cut(s) 258, 658
Kzo9I GATC 5 cut(s) 258, 280, 298, 658, 844
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 3 cut(s) 686, 692, 705
Lsp1109I GCAGC 6 cut(s) 121, 187, 623, 682, 689, 720
LweI GCATC 5 cut(s) 496, 577, 620, 746, 750
MaeI CTAG 2 cut(s) 216, 237
MaeII ACGT 2 cut(s) 43, 159
MaeIII GTNAC 4 cut(s) 65, 239, 460, 649
MalI GATC 5 cut(s) 260, 282, 300, 660, 846
MboI GATC 5 cut(s) 258, 280, 298, 658, 844
MboII GAAGA 6 cut(s) 26, 45, 290, 412, 551, 779
MflI RGATCY 2 cut(s) 280, 844
MhlI GDGCHC 2 cut(s) 125, 774
MlsI TGGCCA 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 2 cut(s) 304, 812
MnlI CCTC 8 cut(s) 25, 150, 475, 598, 616, 742, 750, 789
Mox20I TGGCCA 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 86
MseI TTAA 3 cut(s) 617, 732, 803
Msp20I TGGCCA 1 cut(s) 86
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 2 cut(s) 145, 329
Mva1269I GAATGC 2 cut(s) 229, 346
MvaI CCWGG 2 cut(s) 145, 329
MvnI CGCG 3 cut(s) 297, 434, 436
MwoI GCNNNNNNNGC 5 cut(s) 172, 355, 442, 686, 769
NdeII GATC 5 cut(s) 258, 280, 298, 658, 844
NlaIII CATG 4 cut(s) 475, 514, 665, 686
NlaIV GGNNCC 2 cut(s) 348, 694
NmuCI GTSAC 2 cut(s) 65, 649
NruI TCGCGA 1 cut(s) 297
NspI RCATGY 1 cut(s) 475
PaeI GCATGC 1 cut(s) 475
PauI GCGCGC 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 762
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 229, 346
PdmI GAANNNNTTC 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 6 cut(s) 111, 177, 613, 672, 679, 710
PleI GAGTC 2 cut(s) 304, 812
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 2 cut(s) 304, 812
Ppu21I YACGTR 1 cut(s) 44
PsiI TTATAA 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 143, 327
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 2 cut(s) 143, 327
PspN4I GGNNCC 2 cut(s) 348, 694
PspPI GGNCC 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 445
PsuI RGATCY 2 cut(s) 280, 844
PsyI GACNNNGTC 1 cut(s) 16
PteI GCGCGC 1 cut(s) 434
RruI TCGCGA 1 cut(s) 297
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 3 cut(s) 617, 732, 803
SatI GCNGC 6 cut(s) 110, 176, 612, 671, 678, 709
Sau3AI GATC 5 cut(s) 258, 280, 298, 658, 844
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 2 cut(s) 304, 812
ScrFI CCNGG 2 cut(s) 145, 329
SduI GDGCHC 2 cut(s) 125, 774
SfaNI GCATC 5 cut(s) 496, 577, 620, 746, 750
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
SpeI ACTAGT 1 cut(s) 236
SphI GCATGC 1 cut(s) 475
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 216, 237
StyD4I CCNGG 2 cut(s) 143, 327
TaiI ACGT 2 cut(s) 46, 162
Tru1I TTAA 3 cut(s) 617, 732, 803
Tru9I TTAA 3 cut(s) 617, 732, 803
TseFI GTSAC 2 cut(s) 65, 649
TseI GCWGC 6 cut(s) 109, 175, 611, 670, 677, 708
Tsp45I GTSAC 2 cut(s) 65, 649
TspDTI ATGAA 2 cut(s) 17, 688
Tth111I GACNNNGTC 1 cut(s) 16
XceI RCATGY 1 cut(s) 475
XmiI GTMKAC 2 cut(s) 779, 831
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 216, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.