Rroxscaffold_3G00241030

YacP-like NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003444
Physical Location & Seq
Reverse (-)
33001212 .. 33011908
10697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241030.1

Sequence Viewer

Length: 1041 bp
ATGATCGGGGGAGGAGGAGATCACCATGGTGGGAACGATCGGCCCATGCAACGCCGTAAAACTAGTTTTCCGCCGGTCCGATCGCTCGGAGCCGGGCTCCTTCGATCCGTGTCCGGGGGTAGTGGTGGGGCGAGGCGACACCGCAGGGAGGGCGGGCTTGGAGCGGCAATCAAGGTGGTGCCCGGTCCGGGGCCGCAGTGGCCGAAGGGGGTGAAAAAGCCGGGTAGGGTCGAGCTCGACCCGCCGGGTCCGAGGGAAAAACAGAGCGAGAGAATCGGGGGCTCTGAGCCAAGTCCACCTCCGAGGATTACATCAAACGTTAGGCAGAACTTGCAGCTTTTAAAGTTATGGAAGGAGTTCCAAAAGAGAAAGACTAGCGCACCTAAGCATTCTACTAGTTACCGGAGAAAGAAGGTGATCAAGGGTGATGTTCCCGAAGATCCAGAACTGTATCGTGATCCCACCACGACTCTCTACTATACAAACCAGGGTTTTGAGAATGCGGTGCCTGTTTTGCTTGTTGATGGGTACAATGTATGTGGGTATTGGGCCAAGCTGAAGAAACATTTTGTGAATGGGAGACTTGATATCGCGCGCCAGAAGCTGATTGATGAGCTTGTAACTTTTAGCATGCTTAGAGAGGTGAAGGTGGTAGCTGTATTTGATGCCATGATGTCTGGACTACCCACGCACAAGGAAGATTTTGCCGGCGTTGATGTCGTTTTCTCAGGTGATACTTGTGCTGATGCGTGGATTGAAAAAGAGGTTGCAGCTTTAAGGGAGGATGGATGCCCTAAAGTTTGGGTTGTGACTTCTGATCATGTTCAGCAGCACGCAGCACATGGAGCAGGAGCCTTCATTTGGAGCAGCAAGGCATTGATTTCTGAGATTAAAGCATCACAGAAGGAGGTTGAGAGGATGCTCGAAGAACACAGGTCTACTTCATTTCAAGGGAGGTTATTAAAGCACAATCTTGACTCAGAAGTTGTAGACGCTCTCAAGGATCTTAGAACGAAGTTATCTGAAACTGAACCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN_YacP

Protein Analysis

346

Amino Acids

38.31

Weight (kDa)

9.57

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN_YacP PF05991 172 - 337 1.8e-41 YacP-like NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 178, 505
AccBSI CCGCTC 1 cut(s) 164
AccI GTMKAC 2 cut(s) 938, 990
AccII CGCG 2 cut(s) 593, 595
AciI CCGC 7 cut(s) 71, 142, 153, 164, 194, 242, 503
AclI AACGTT 1 cut(s) 318
AclWI GGATC 4 cut(s) 99, 434, 452, 1011
AcoI YGGCCR 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 5 cut(s) 114, 148, 188, 189, 861
AgsI TTSAA 2 cut(s) 758, 950
AhlI ACTAGT 2 cut(s) 62, 395
AjnI CCWGG 1 cut(s) 486
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 7 cut(s) 235, 337, 556, 604, 616, 656, 773
AluI AGCT 7 cut(s) 235, 337, 556, 604, 616, 656, 773
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 574
AlwI GGATC 4 cut(s) 99, 434, 452, 1011
AlwNI CAGNNNCTG 1 cut(s) 604
AoxI GGCC 4 cut(s) 41, 191, 200, 549
ApeKI GCWGC 5 cut(s) 334, 770, 829, 836, 867
Asp700I GAANNNNTTC 1 cut(s) 356
AspLEI GCGC 3 cut(s) 380, 595, 597
AspS9I GGNCC 6 cut(s) 42, 76, 185, 191, 248, 549
AsuC2I CCSGG 6 cut(s) 94, 115, 183, 189, 222, 246
AsuHPI GGTGA 6 cut(s) 14, 223, 427, 437, 655, 743
AvaII GGWCC 3 cut(s) 76, 185, 248
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 2 cut(s) 178, 505
BanII GRGCYC 3 cut(s) 99, 237, 284
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 5 cut(s) 346, 782, 841, 848, 879
BccI CCATC 2 cut(s) 518, 779
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 488
BclI TGATCA 2 cut(s) 417, 817
BcnI CCSGG 6 cut(s) 94, 115, 183, 189, 222, 246
BcoDI GTCTC 1 cut(s) 574
BcuI ACTAGT 2 cut(s) 62, 395
BfaI CTAG 3 cut(s) 63, 375, 396
BglI GCCNNNNNGGC 1 cut(s) 199
BisI GCNGC 7 cut(s) 165, 194, 335, 771, 830, 837, 868
BlsI GCNGC 7 cut(s) 166, 195, 336, 772, 831, 838, 869
Bme1390I CCNGG 7 cut(s) 94, 115, 183, 189, 222, 246, 488
Bme18I GGWCC 3 cut(s) 76, 185, 248
BmgT120I GGNCC 6 cut(s) 42, 76, 185, 191, 248, 549
BmiI GGNNCC 7 cut(s) 91, 98, 180, 192, 249, 507, 853
BmrFI CCNGG 7 cut(s) 94, 115, 183, 189, 222, 246, 488
BmsI GCATC 5 cut(s) 655, 736, 779, 905, 909
BplI GAGNNNNNCTC 2 cut(s) 81, 113
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 6 cut(s) 94, 115, 183, 189, 222, 246
BsaJI CCNNGG 6 cut(s) 25, 114, 188, 251, 302, 487
BsaWI WCCGGW 1 cut(s) 402
Bsc4I CCNNNNNNNGG 5 cut(s) 114, 148, 188, 189, 861
Bse118I RCCGGY 2 cut(s) 73, 707
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 6 cut(s) 25, 114, 188, 251, 302, 487
BseGI GGATG 3 cut(s) 790, 794, 924
BseLI CCNNNNNNNGG 5 cut(s) 114, 148, 188, 189, 861
BseMII CTCAG 4 cut(s) 276, 741, 876, 993
BsePI GCGCGC 1 cut(s) 593
BseRI GAGGAG 2 cut(s) 27, 30
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 5 cut(s) 346, 782, 841, 848, 879
Bsh1236I CGCG 2 cut(s) 593, 595
Bsh1285I CGRYCG 2 cut(s) 40, 83
BshFI GGCC 4 cut(s) 43, 193, 202, 551
BshNI GGYRCC 2 cut(s) 178, 505
BsiEI CGRYCG 2 cut(s) 40, 83
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 9 cut(s) 74, 93, 114, 183, 188, 221, 245, 403, 708
BslI CCNNNNNNNGG 5 cut(s) 114, 148, 188, 189, 861
BsmAI GTCTC 1 cut(s) 574
BsmI GAATGC 2 cut(s) 388, 505
BsnI GGCC 4 cut(s) 43, 193, 202, 551
Bsp1286I GDGCHC 4 cut(s) 99, 183, 237, 284
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 7 cut(s) 71, 142, 153, 164, 194, 242, 503
BspANI GGCC 4 cut(s) 43, 193, 202, 551
BspCNI CTCAG 4 cut(s) 277, 740, 877, 992
BspFNI CGCG 2 cut(s) 593, 595
BspLI GGNNCC 7 cut(s) 91, 98, 180, 192, 249, 507, 853
BspPI GGATC 4 cut(s) 99, 434, 452, 1011
BspT107I GGYRCC 2 cut(s) 178, 505
BsrBI CCGCTC 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 73, 707
BssAI RCCGGY 2 cut(s) 73, 707
BssECI CCNNGG 6 cut(s) 25, 114, 188, 251, 302, 487
BssHII GCGCGC 1 cut(s) 593
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 5 cut(s) 155, 595, 632, 709, 834
BstDEI CTNAG 7 cut(s) 285, 384, 635, 727, 885, 979, 1007
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 3 cut(s) 790, 794, 924
BstFNI CGCG 2 cut(s) 593, 595
BstHHI GCGC 3 cut(s) 380, 595, 597
BstMAI GTCTC 1 cut(s) 574
BstMCI CGRYCG 2 cut(s) 40, 83
BstMWI GCNNNNNNNGC 7 cut(s) 150, 199, 241, 331, 514, 601, 845
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 7 cut(s) 92, 113, 181, 187, 220, 244, 486
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 2 cut(s) 593, 595
BstV1I GCAGC 5 cut(s) 346, 782, 841, 848, 879
BstX2I RGATCY 2 cut(s) 439, 1003
BstYI RGATCY 2 cut(s) 439, 1003
BsuRI GGCC 4 cut(s) 43, 193, 202, 551
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 3 cut(s) 790, 794, 924
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 5 cut(s) 155, 595, 632, 709, 834
CaiI CAGNNNCTG 1 cut(s) 604
CfoI GCGC 3 cut(s) 380, 595, 597
Cfr10I RCCGGY 2 cut(s) 73, 707
Cfr13I GGNCC 6 cut(s) 42, 76, 185, 191, 248, 549
CpoI CGGWCCG 2 cut(s) 76, 185
CseI GACGC 1 cut(s) 1001
Csp6I GTAC 1 cut(s) 529
CspCI CAANNNNNGTGG 4 cut(s) 156, 191, 520, 555
CspI CGGWCCG 2 cut(s) 76, 185
CviAII CATG 6 cut(s) 26, 46, 631, 670, 821, 842
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 7 cut(s) 285, 384, 635, 727, 885, 979, 1007
DraI TTTAAA 1 cut(s) 342
EaeI YGGCCR 1 cut(s) 200
EciI GGCGGA 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 25
Eco24I GRGCYC 3 cut(s) 99, 237, 284
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 3 cut(s) 76, 185, 248
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 25
EcoT38I GRGCYC 3 cut(s) 99, 237, 284
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 6 cut(s) 29, 49, 634, 673, 824, 845
FaiI YATR 9 cut(s) 27, 47, 349, 480, 538, 632, 671, 822, 843
FatI CATG 6 cut(s) 25, 45, 630, 669, 820, 841
FauI CCCGC 2 cut(s) 146, 249
FbaI TGATCA 2 cut(s) 417, 817
FblI GTMKAC 2 cut(s) 938, 990
Fnu4HI GCNGC 7 cut(s) 165, 194, 335, 771, 830, 837, 868
FokI GGATG 3 cut(s) 797, 801, 931
FriOI GRGCYC 3 cut(s) 99, 237, 284
Fsp4HI GCNGC 7 cut(s) 165, 194, 335, 771, 830, 837, 868
FspBI CTAG 3 cut(s) 63, 375, 396
GlaI GCGC 3 cut(s) 379, 594, 596
GluI GCNGC 7 cut(s) 165, 194, 335, 771, 830, 837, 868
HaeIII GGCC 4 cut(s) 43, 193, 202, 551
HapII CCGG 9 cut(s) 74, 93, 114, 183, 188, 221, 245, 403, 708
HgaI GACGC 1 cut(s) 1001
HhaI GCGC 3 cut(s) 380, 595, 597
Hin1II CATG 6 cut(s) 29, 49, 634, 673, 824, 845
Hin6I GCGC 3 cut(s) 378, 593, 595
HinP1I GCGC 3 cut(s) 378, 593, 595
HinfI GANTC 3 cut(s) 273, 469, 977
HpaII CCGG 9 cut(s) 74, 93, 114, 183, 188, 221, 245, 403, 708
HphI GGTGA 6 cut(s) 14, 223, 427, 437, 655, 743
Hpy166II GTNNAC 3 cut(s) 296, 939, 991
Hpy188I TCNGA 9 cut(s) 80, 89, 252, 286, 303, 817, 886, 982, 1024
Hpy188III TCNNGA 5 cut(s) 434, 443, 455, 678, 974
Hpy8I GTNNAC 3 cut(s) 296, 939, 991
HpyAV CCTTC 7 cut(s) 110, 199, 346, 406, 640, 865, 898
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 49, 334, 770
HpyF10VI GCNNNNNNNGC 7 cut(s) 150, 199, 241, 331, 514, 601, 845
HpyF3I CTNAG 7 cut(s) 285, 384, 635, 727, 885, 979, 1007
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 6 cut(s) 29, 49, 634, 673, 824, 845
HspAI GCGC 3 cut(s) 378, 593, 595
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Ksp22I TGATCA 2 cut(s) 417, 817
LmnI GCTCC 6 cut(s) 89, 102, 161, 845, 851, 864
Lsp1109I GCAGC 5 cut(s) 346, 782, 841, 848, 879
LweI GCATC 5 cut(s) 655, 736, 779, 905, 909
MaeI CTAG 3 cut(s) 63, 375, 396
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 398, 619, 808
MbiI CCGCTC 1 cut(s) 164
MboII GAAGA 4 cut(s) 449, 571, 710, 938
MflI RGATCY 2 cut(s) 439, 1003
MhlI GDGCHC 4 cut(s) 99, 183, 237, 284
MlyI GAGTC 2 cut(s) 463, 971
MroNI GCCGGC 1 cut(s) 707
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 4 cut(s) 341, 776, 891, 962
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 9 cut(s) 74, 93, 114, 183, 188, 221, 245, 403, 708
MspR9I CCNGG 7 cut(s) 94, 115, 183, 189, 222, 246, 488
Mva1269I GAATGC 2 cut(s) 388, 505
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 2 cut(s) 593, 595
MwoI GCNNNNNNNGC 7 cut(s) 150, 199, 241, 331, 514, 601, 845
NaeI GCCGGC 1 cut(s) 709
NciI CCSGG 6 cut(s) 94, 115, 183, 189, 222, 246
NcoI CCATGG 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 6 cut(s) 29, 49, 634, 673, 824, 845
NlaIV GGNNCC 7 cut(s) 91, 98, 180, 192, 249, 507, 853
NmuCI GTSAC 1 cut(s) 808
NspI RCATGY 1 cut(s) 634
OliI CACNNNNGTG 1 cut(s) 27
PaeI GCATGC 1 cut(s) 634
PauI GCGCGC 1 cut(s) 593
PctI GAATGC 2 cut(s) 388, 505
PdiI GCCGGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 7 cut(s) 166, 195, 336, 772, 831, 838, 869
Ple19I CGATCG 2 cut(s) 40, 83
PleI GAGTC 2 cut(s) 463, 971
PpsI GAGTC 2 cut(s) 463, 971
Psp124BI GAGCTC 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 7 cut(s) 91, 98, 180, 192, 249, 507, 853
PspPI GGNCC 6 cut(s) 42, 76, 185, 191, 248, 549
PstNI CAGNNNCTG 1 cut(s) 604
PsuI RGATCY 2 cut(s) 439, 1003
PteI GCGCGC 1 cut(s) 593
PvuI CGATCG 2 cut(s) 40, 83
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 27
Rsr2I CGGWCCG 2 cut(s) 76, 185
RsrII CGGWCCG 2 cut(s) 76, 185
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 4 cut(s) 341, 776, 891, 962
SatI GCNGC 7 cut(s) 165, 194, 335, 771, 830, 837, 868
Sau96I GGNCC 6 cut(s) 42, 76, 185, 191, 248, 549
SchI GAGTC 2 cut(s) 463, 971
ScrFI CCNGG 7 cut(s) 94, 115, 183, 189, 222, 246, 488
SduI GDGCHC 4 cut(s) 99, 183, 237, 284
SfaNI GCATC 5 cut(s) 655, 736, 779, 905, 909
SfiI GGCCNNNNNGGCC 1 cut(s) 199
SinI GGWCC 3 cut(s) 76, 185, 248
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
SpeI ACTAGT 2 cut(s) 62, 395
SphI GCATGC 1 cut(s) 634
SsiI CCGC 7 cut(s) 71, 142, 153, 164, 194, 242, 503
SspMI CTAG 3 cut(s) 63, 375, 396
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 7 cut(s) 92, 113, 181, 187, 220, 244, 486
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 450
TaiI ACGT 1 cut(s) 321
TaqI TCGA 4 cut(s) 103, 231, 237, 924
TauI GCSGC 2 cut(s) 167, 196
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 4 cut(s) 341, 776, 891, 962
Tru9I TTAA 4 cut(s) 341, 776, 891, 962
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 5 cut(s) 334, 770, 829, 836, 867
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 2 cut(s) 847, 933
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 203
VpaK11BI GGWCC 3 cut(s) 76, 185, 248
XceI RCATGY 1 cut(s) 634
XmiI GTMKAC 2 cut(s) 938, 990
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 3 cut(s) 63, 375, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.