Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003444

Physical Location & Seq

Genomic Coordinates Reverse (-)

47699561 .. 47714097

Gene Structure 14537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G587400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAAATCGGCGCCGTCGTCGTCTTTACTCTTTCTGGTGCCACGTGGCTGCTATTCTTGTTCCTGTGTCAAGTTTGTTATAATGGCCAAGGGCAACAACAACAAGAAAAAGTCTCAGCAACCTCCATCTCCTACTCCAATGGTCTCCGAGCCAAGTCCTCCCAGGATTACATCAAATGTCAGGCAGAATTTACAGCTTTTGAAGTTATGGAAGGATTACCAAAAGAGAAAGTCTAGCACACCTAAGCACTCTACCAGTTACCGCAGAAAGAAGGTGCCCAAGGAACAGCTTCCAGAAGACTTAGACCTCTATCGTGATCCAACCACCACCCTCTACTATACAAACCAGGGTTGGGACATTGCAGTTCCAGTCTTGCTTGTTGATGGGTATAACGTATGCGGTTATTGGGCGAAGCTGAAGAAACATTTTATCAATGGGAGACTTGATATGGCTCGCCAAAAGTTAATCGATGAACTTGTAACTTTCAGCTTGCTAAGAGAGGTGAAAGTGGTGGCTGTATTTGATGCCATGATGTCTGGACTCCCCACACACAAGGAAGATTTTAATGGTGTCGATGTAGTTTACTCAGGTGAATCTTGTGCGGATGCGTGGATTGAGAAAGAGGTTGCAGCCTTAAGGGAGGATGGATGCCCTAAAGTTTGGGTTGTGACTTCTGATCATATTCAGCAGCATGCAGCACATGGAGCAGGAGCCTTCATTTGGAGTTGCAAGGCGTTGGTTTCTGAGATTAAAGCATCACAAAAGGAGTTTGAGAGGATGCTTCAGGAACACAGGTCTACTTCTTTTCAAGGGAGGTTATTAAAGCACAATCTTGATTCAGAAGTTGTAGATGCTCTCAAGGATCTCAGAAGGAAGTTATCTGAAACTGAATCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NYN_YacP

Protein Analysis

300

Amino Acids

33.95

Weight (kDa)

9.23

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410 AT2G02410
fragaria_vesca	FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220 FvH4_5g27220
malus_domestica	MD15G1445500.v1.1
prunus_persica	Prupe.1G587400_v2.0.a1
pyrus_communis	pycom15g39240
rosa_chinensis	RchiOBHm_Chr7g0218321
rosa_laevigata	RLG00000002378
rosa_multiflora	Rmu_sc0003339.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241030
rosa_rugosa	Rorug07G0176700 Rorug07G0176800 Rorug07G0176900.1
rosa_samantha	Rh7AG318100 Rh7BG310000 Rh7CG334900 Rh7DG317200
rosa_wichuraiana	Rw7G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccB1I	GGYRCC	3 cut(s)	10, 37, 274
AccI	GTMKAC	1 cut(s)	797
AciI	CCGC	3 cut(s)	262, 399, 602
AclWI	GGATC	2 cut(s)	311, 870
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	437, 767
AcvI	CACGTG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	352, 720
AflII	CTTAAG	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	202, 809
AjnI	CCWGG	2 cut(s)	161, 345
AluBI	AGCT	4 cut(s)	196, 289, 415, 489
AluI	AGCT	4 cut(s)	196, 289, 415, 489
Alw26I	GTCTC	3 cut(s)	117, 148, 433
AlwI	GGATC	2 cut(s)	311, 870
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	4 cut(s)	48, 629, 688, 695
ApoI	RAATTY	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	514, 602
BaeGI	GKGCMC	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	3 cut(s)	10, 37, 274
BbrPI	CACGTG	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	4 cut(s)	35, 641, 700, 707
BccI	CCATC	3 cut(s)	133, 377, 638
BciT130I	CCWGG	2 cut(s)	163, 347
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	3 cut(s)	117, 148, 433
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	14
BfrI	CTTAAG	1 cut(s)	634
BisI	GCNGC	4 cut(s)	49, 630, 689, 696
BlsI	GCNGC	4 cut(s)	50, 631, 690, 697
Bme1390I	CCNGG	2 cut(s)	163, 347
BmiI	GGNNCC	4 cut(s)	12, 39, 276, 712
BmrFI	CCNGG	2 cut(s)	163, 347
BmsI	GCATC	6 cut(s)	514, 595, 638, 764, 768, 841
BpiI	GAAGAC	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	842
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	4 cut(s)	87, 161, 279, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 720
Bse1I	ACTGG	2 cut(s)	255, 368
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	163, 347
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	4 cut(s)	87, 161, 279, 346
BseGI	GGATG	4 cut(s)	610, 649, 653, 783
BseLI	CCNNNNNNNGG	2 cut(s)	352, 720
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	4 cut(s)	128, 600, 735, 880
BseNI	ACTGG	2 cut(s)	255, 368
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	35, 641, 700, 707
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	3 cut(s)	10, 37, 274
BshVI	ATCGAT	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	352, 720
BsmAI	GTCTC	3 cut(s)	117, 148, 433
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	316, 676, 862
BspACI	CCGC	3 cut(s)	262, 399, 602
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	4 cut(s)	127, 599, 736, 879
BspDI	ATCGAT	1 cut(s)	468
BspLI	GGNNCC	4 cut(s)	12, 39, 276, 712
BspPI	GGATC	2 cut(s)	311, 870
BspT107I	GGYRCC	3 cut(s)	10, 37, 274
BspTI	CTTAAG	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	255, 368
BssECI	CCNNGG	4 cut(s)	87, 161, 279, 346
BssMI	GATC	3 cut(s)	316, 676, 862
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	87, 279
Bst2UI	CCWGG	2 cut(s)	163, 347
BstACI	GRCGYC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	634
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	454, 491, 693
BstDEI	CTNAG	7 cut(s)	114, 243, 301, 494, 586, 744, 866
BstF5I	GGATG	4 cut(s)	610, 649, 653, 783
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	319, 679, 865
BstMAI	GTCTC	3 cut(s)	117, 148, 433
BstMBI	GATC	3 cut(s)	316, 676, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNI	CCWGG	2 cut(s)	163, 347
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	2 cut(s)	161, 345
BstSLI	GKGCMC	1 cut(s)	279
BstV1I	GCAGC	4 cut(s)	35, 641, 700, 707
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
Bsu15I	ATCGAT	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	468
BtsCI	GGATG	4 cut(s)	610, 649, 653, 783
Cac8I	GCNNGC	3 cut(s)	454, 491, 693
CfoI	GCGC	1 cut(s)	13
ClaI	ATCGAT	1 cut(s)	468
CviAII	CATG	3 cut(s)	529, 692, 701
DdeI	CTNAG	7 cut(s)	114, 243, 301, 494, 586, 744, 866
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	3 cut(s)	318, 678, 864
DpnII	GATC	3 cut(s)	316, 676, 862
EaeI	YGGCCR	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	87, 279
Eco31I	GGTCTC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	437, 767
Eco72I	CACGTG	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	161, 345
EcoT14I	CCWWGG	2 cut(s)	87, 279
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	87, 279
FaeI	CATG	3 cut(s)	532, 695, 704
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	528, 691, 700
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	797
Fnu4HI	GCNGC	4 cut(s)	49, 630, 689, 696
FokI	GGATG	4 cut(s)	617, 656, 660, 790
Fsp4HI	GCNGC	4 cut(s)	49, 630, 689, 696
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	4 cut(s)	49, 630, 689, 696
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	532, 695, 704
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	4 cut(s)	540, 593, 836, 890
HphI	GGTGA	2 cut(s)	514, 602
Hpy166II	GTNNAC	2 cut(s)	583, 798
Hpy188I	TCNGA	6 cut(s)	148, 676, 745, 841, 869, 883
Hpy188III	TCNNGA	5 cut(s)	293, 314, 537, 785, 833
Hpy8I	GTNNAC	2 cut(s)	583, 798
Hpy99I	CGWCG	2 cut(s)	19, 22
HpyAV	CCTTC	4 cut(s)	205, 265, 724, 864
HpyCH4IV	ACGT	2 cut(s)	43, 393
HpyCH4V	TGCA	4 cut(s)	362, 629, 695, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	7 cut(s)	114, 243, 301, 494, 586, 744, 866
HpySE526I	ACGT	2 cut(s)	43, 393
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	532, 695, 704
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	3 cut(s)	316, 676, 862
LmnI	GCTCC	2 cut(s)	704, 710
Lsp1109I	GCAGC	4 cut(s)	35, 641, 700, 707
LweI	GCATC	6 cut(s)	514, 595, 638, 764, 768, 841
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	43, 393
MaeIII	GTNAC	3 cut(s)	257, 478, 667
MalI	GATC	3 cut(s)	318, 678, 864
MboI	GATC	3 cut(s)	316, 676, 862
MboII	GAAGA	3 cut(s)	308, 430, 569
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	86
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	9 cut(s)	132, 168, 317, 341, 493, 616, 634, 768, 807
Mox20I	TGGCCA	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	5 cut(s)	464, 564, 635, 750, 821
Msp20I	TGGCCA	1 cut(s)	86
MspCI	CTTAAG	1 cut(s)	634
MspR9I	CCNGG	2 cut(s)	163, 347
MvaI	CCWGG	2 cut(s)	163, 347
MwoI	GCNNNNNNNGC	1 cut(s)	704
NarI	GGCGCC	1 cut(s)	11
NdeII	GATC	3 cut(s)	316, 676, 862
NlaIII	CATG	3 cut(s)	532, 695, 704
NlaIV	GGNNCC	4 cut(s)	12, 39, 276, 712
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	593, 836, 890
PkrI	GCNGC	4 cut(s)	50, 631, 690, 697
PleI	GAGTC	1 cut(s)	534
PluTI	GGCGCC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	161, 345
PspCI	CACGTG	1 cut(s)	44
PspGI	CCWGG	2 cut(s)	161, 345
PspN4I	GGNNCC	4 cut(s)	12, 39, 276, 712
PsuI	RGATCY	1 cut(s)	862
SaqAI	TTAA	5 cut(s)	464, 564, 635, 750, 821
SatI	GCNGC	4 cut(s)	49, 630, 689, 696
Sau3AI	GATC	3 cut(s)	316, 676, 862
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	2 cut(s)	163, 347
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	6 cut(s)	514, 595, 638, 764, 768, 841
SfoI	GGCGCC	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	634, 857
SmoI	CTYRAG	2 cut(s)	634, 857
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	262, 399, 602
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	161, 345
StyI	CCWWGG	2 cut(s)	87, 279
TaiI	ACGT	2 cut(s)	46, 396
TaqI	TCGA	3 cut(s)	468, 573, 893
TasI	AATT	1 cut(s)	187
TfiI	GAWTC	3 cut(s)	593, 836, 890
Tru1I	TTAA	5 cut(s)	464, 564, 635, 750, 821
Tru9I	TTAA	5 cut(s)	464, 564, 635, 750, 821
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	4 cut(s)	48, 629, 688, 695
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	3 cut(s)	17, 486, 706
Vha464I	CTTAAG	1 cut(s)	634
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.