Rorug07G0176800

YacP-like NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003444
Physical Location & Seq
Forward (+)
14647874 .. 14653758
5885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0176800.1

Sequence Viewer

Length: 1476 bp
ATGATGGGAGGAGCCAAACGTTTCGGCTTATCGGATACCAACTCCGACTCCGCTGCCTTTCGGAACAAAAGAATAATGACAGGATCCTCATTTGATGTTCATAGAGCAGAATCTTCTCAAGAGCAGAATACGGCTACACCTTCATTAGATGAACGGCGAGCCGAGTCATCGCGGCTGCATGTGAGAGCTCTCAACACCCAATTTGCAAGTTGGGTACAGACACAACTAAAAAATCATCCTGATGAAATTTGGGAAGACGGTATTCGAGATTACCTGGCCCATGCTTCAAACATCATGGAAAAATTCAGTGACATTGTGAACTGGCTTAAAGTAAATGCTGCAAAAGGAGAAACTTTGGCTGCTGCAGGATCTCAGACTTCTACTGAGAAGAAAAAGGTGTCGGAGTCCACAAAGAATGAGACGAACAAATTTCAGGCGACAACCCCTTTCTCATCAGTTGGTGCAACCACAAACTTTACAGCTCCATGGAGTGCTGGAGTATTCTCGAACAGCCAGAGCTCTACAGGAGTATTCTCCAACAACCATAGCTCCACAGGAGTGTTCTCTACCAGCAAAAGTTCTACAGGAGTATCTTCCAATGGCCAAAGCTATTCAGGATTATATAACAACCAAAGCTCTCCAGTCTTCTCCGCTAATCAGAGCTCCAGCATATTTTCCAGTAGTCAGAGCTCCGGCATGTTCTCCAATAGCCAAAGCTCCAGCATGTTTTCCAATAGCCAAAGCCCCGGGCAATTCTCAAATAGTCAAAGCTCTAAAGTTTCTTCCGATAGTCAAAGCCCTGGGTTATTTTCTAGTAGTCAAAGTTCGGCATTATTTTCCAATAGTCAAAGCCCGGGATTATTTTCCAACAATCAAAGTTTTGGGGGATTCTCCAACACTCCCAGTTTTGGGTTATTCTCCAACAATCAAAGTTCTGGGGCATTGTCCAACAGTCAACCCCCTCCCTTGTTTGGAAGTCAGAGTTCAGTTCCTCAAAACCGTGATGGTTCTGATGAAGCAGATGCTGATAATGATGTGGAGGAACCTAGCAGCCCATCTGTGAAAAAGTCTGAAGAAAAGGGTGTTGTTGTAGTCCACGAAGTCAAGTGCAAACTTTATGTGAAGTCAAGTGATCCAGCGGATAGTTGGAAAGATAAAGGGACAGGGCAGCTAACGATAAGATGCAAAGAGGGTGTCAGCAAGGGTACAAAAGAATCAAAACCAACAGTCATTGTTCGGAATGATGTGGGAAAGCTGCTGCTTAACGCGTTGTTATATTCAGGCATCAAGACTAATCCGCAGAAGAATTCCCTCGTTGCAATATTTCATACTGCGGGCGATGGTGATGGAAATGAAGGTAGTAATCAAGATAGTGTTGTGGCACAAACCTTCTTAATAAGGATGAAGACAGAGGAGGATAGAAATAAACTGGCCACAGCAATCCAAGAATATGCTCCTGCATCTGAAAGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN_YacP

Protein Analysis

491

Amino Acids

52.38

Weight (kDa)

6.22

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ran_BP1 PF00638 354 - 483 3.3e-07 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 172, 1268
AciI CCGC 6 cut(s) 51, 172, 651, 1139, 1298, 1334
AclI AACGTT 1 cut(s) 19
AclWI GGATC 4 cut(s) 78, 91, 376, 1127
AcoI YGGCCR 2 cut(s) 601, 1431
AcsI RAATTY 4 cut(s) 246, 302, 428, 1306
AcuI CTGAAG 1 cut(s) 1092
AfaI GTAC 2 cut(s) 216, 1207
AfiI CCNNNNNNNGG 3 cut(s) 908, 909, 971
AflIII ACRYGT 1 cut(s) 1266
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 2 cut(s) 273, 799
AleI CACNNNNGTG 1 cut(s) 557
Alw21I GWGCWC 4 cut(s) 190, 521, 665, 692
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 78, 91, 376, 1127
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 2 cut(s) 746, 853
AoxI GGCC 3 cut(s) 276, 601, 1431
ApeKI GCWGC 9 cut(s) 53, 175, 338, 359, 362, 1050, 1168, 1255, 1258
ApoI RAATTY 4 cut(s) 246, 302, 428, 1306
ArsI GACNNNNNNTTYG 2 cut(s) 1179, 1211
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 4 cut(s) 747, 748, 854, 855
AsuHPI GGTGA 1 cut(s) 1355
AvaI CYCGRG 2 cut(s) 746, 853
BaeI ACNNNNGTAYC 2 cut(s) 573, 606
BalI TGGCCA 2 cut(s) 603, 1433
BamHI GGATCC 1 cut(s) 83
BanII GRGCYC 4 cut(s) 190, 521, 665, 692
BbsI GAAGAC 3 cut(s) 261, 637, 1412
Bbv12I GWGCWC 4 cut(s) 190, 521, 665, 692
BbvI GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1062, 1180, 1242, 1245
BccI CCATC 4 cut(s) 998, 1063, 1334, 1340
BceAI ACGGC 2 cut(s) 147, 170
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 2 cut(s) 275, 801
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 4 cut(s) 747, 748, 854, 855
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 2 cut(s) 813, 1047
BfmI CTRYAG 3 cut(s) 363, 522, 582
BfuI GTATCC 1 cut(s) 28
Bme1390I CCNGG 6 cut(s) 275, 747, 748, 801, 854, 855
BmeT110I CYCGRG 2 cut(s) 746, 853
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 3 cut(s) 13, 85, 1044
BmrFI CCNGG 6 cut(s) 275, 747, 748, 801, 854, 855
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 4 cut(s) 1012, 1172, 1293, 1469
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 3 cut(s) 261, 637, 1412
BpmI CTGGAG 4 cut(s) 516, 624, 649, 703
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 4 cut(s) 747, 748, 854, 855
BsaJI CCNNGG 6 cut(s) 485, 745, 746, 799, 800, 853
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 908, 909, 971
Bse1I ACTGG 5 cut(s) 326, 641, 678, 903, 1434
BseBI CCWGG 2 cut(s) 275, 801
BseDI CCNNGG 6 cut(s) 485, 745, 746, 799, 800, 853
BseGI GGATG 2 cut(s) 235, 1407
BseLI CCNNNNNNNGG 3 cut(s) 908, 909, 971
BseMII CTCAG 2 cut(s) 375, 386
BseNI ACTGG 5 cut(s) 326, 641, 678, 903, 1434
BseRI GAGGAG 2 cut(s) 24, 1427
BseXI GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1062, 1180, 1242, 1245
Bsh1236I CGCG 2 cut(s) 172, 1268
BshFI GGCC 3 cut(s) 278, 603, 1433
BsiHKAI GWGCWC 4 cut(s) 190, 521, 665, 692
BsiHKCI CYCGRG 2 cut(s) 746, 853
BsiSI CCGG 3 cut(s) 693, 747, 854
BslFI GGGAC 1 cut(s) 1174
BslI CCNNNNNNNGG 3 cut(s) 908, 909, 971
BsmAI GTCTC 1 cut(s) 413
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 1174
BsnI GGCC 3 cut(s) 278, 603, 1433
BsoBI CYCGRG 2 cut(s) 746, 853
Bsp1286I GDGCHC 4 cut(s) 190, 521, 665, 692
Bsp143I GATC 3 cut(s) 83, 368, 1132
Bsp19I CCATGG 1 cut(s) 485
BspACI CCGC 6 cut(s) 51, 172, 651, 1139, 1298, 1334
BspANI GGCC 3 cut(s) 278, 603, 1433
BspCNI CTCAG 2 cut(s) 376, 385
BspFNI CGCG 2 cut(s) 172, 1268
BspLI GGNNCC 3 cut(s) 13, 85, 1044
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 4 cut(s) 78, 91, 376, 1127
BsrI ACTGG 5 cut(s) 326, 641, 678, 903, 1434
BssECI CCNNGG 6 cut(s) 485, 745, 746, 799, 800, 853
BssMI GATC 3 cut(s) 83, 368, 1132
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 275, 801
Bst4CI ACNGT 4 cut(s) 260, 953, 1001, 1228
BstC8I GCNNGC 2 cut(s) 159, 1336
BstDEI CTNAG 2 cut(s) 372, 384
BstDSI CCRYGG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 235, 1407
BstFNI CGCG 2 cut(s) 172, 1268
BstKTI GATC 3 cut(s) 86, 371, 1135
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 83, 368, 1132
BstNI CCWGG 2 cut(s) 275, 801
BstNSI RCATGY 3 cut(s) 182, 700, 727
BstSCI CCNGG 6 cut(s) 273, 745, 746, 799, 852, 853
BstSFI CTRYAG 3 cut(s) 363, 522, 582
BstUI CGCG 2 cut(s) 172, 1268
BstV1I GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1062, 1180, 1242, 1245
BstV2I GAAGAC 3 cut(s) 261, 637, 1412
BstX2I RGATCY 2 cut(s) 83, 368
BstYI RGATCY 2 cut(s) 83, 368
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 3 cut(s) 278, 603, 1433
BtgI CCRYGG 1 cut(s) 485
BtgZI GCGATG 2 cut(s) 153, 1353
BtsCI GGATG 2 cut(s) 235, 1407
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 159, 1336
CaiI CAGNNNCTG 1 cut(s) 1025
Cfr13I GGNCC 1 cut(s) 277
Cfr9I CCCGGG 2 cut(s) 746, 853
Csp6I GTAC 2 cut(s) 215, 1206
CviAII CATG 6 cut(s) 179, 281, 295, 486, 697, 724
CviQI GTAC 2 cut(s) 215, 1206
DdeI CTNAG 2 cut(s) 372, 384
DpnI GATC 3 cut(s) 85, 370, 1134
DpnII GATC 3 cut(s) 83, 368, 1132
EaeI YGGCCR 2 cut(s) 601, 1431
Ecl136II GAGCTC 4 cut(s) 188, 519, 663, 690
Eco130I CCWWGG 1 cut(s) 485
Eco24I GRGCYC 4 cut(s) 190, 521, 665, 692
Eco53kI GAGCTC 4 cut(s) 188, 519, 663, 690
Eco57I CTGAAG 1 cut(s) 1092
Eco88I CYCGRG 2 cut(s) 746, 853
EcoICRI GAGCTC 4 cut(s) 188, 519, 663, 690
EcoRI GAATTC 1 cut(s) 1306
EcoRII CCWGG 2 cut(s) 273, 799
EcoT14I CCWWGG 1 cut(s) 485
EcoT38I GRGCYC 4 cut(s) 190, 521, 665, 692
ErhI CCWWGG 1 cut(s) 485
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 6 cut(s) 182, 284, 298, 489, 700, 727
FaqI GGGAC 1 cut(s) 1174
FatI CATG 6 cut(s) 178, 280, 294, 485, 696, 723
FauI CCCGC 1 cut(s) 1327
FokI GGATG 2 cut(s) 222, 1414
FriOI GRGCYC 4 cut(s) 190, 521, 665, 692
FspBI CTAG 2 cut(s) 813, 1047
GsuI CTGGAG 4 cut(s) 516, 624, 649, 703
HaeIII GGCC 3 cut(s) 278, 603, 1433
HapII CCGG 3 cut(s) 693, 747, 854
Hin1II CATG 6 cut(s) 182, 284, 298, 489, 700, 727
HincII GTYRAC 1 cut(s) 956
HindII GTYRAC 1 cut(s) 956
HinfI GANTC 6 cut(s) 47, 110, 164, 404, 888, 1214
HpaII CCGG 3 cut(s) 693, 747, 854
HphI GGTGA 1 cut(s) 1355
Hpy166II GTNNAC 4 cut(s) 319, 408, 956, 1096
Hpy188III TCNNGA 7 cut(s) 119, 239, 266, 505, 615, 1288, 1367
Hpy8I GTNNAC 4 cut(s) 319, 408, 956, 1096
HpyAV CCTTC 3 cut(s) 150, 1349, 1399
HpyCH4III ACNGT 4 cut(s) 260, 953, 1001, 1228
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 9 cut(s) 178, 206, 341, 365, 464, 1110, 1185, 1319, 1460
HpyF3I CTNAG 2 cut(s) 372, 384
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 6 cut(s) 182, 284, 298, 489, 700, 727
Kzo9I GATC 3 cut(s) 83, 368, 1132
LmnI GCTCC 7 cut(s) 11, 487, 554, 668, 695, 722, 1459
Lsp1109I GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1062, 1180, 1242, 1245
LweI GCATC 4 cut(s) 1012, 1172, 1293, 1469
MaeI CTAG 2 cut(s) 813, 1047
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 308
MalI GATC 3 cut(s) 85, 370, 1134
MboI GATC 3 cut(s) 83, 368, 1132
MboII GAAGA 9 cut(s) 105, 266, 400, 585, 637, 774, 1085, 1315, 1417
MflI RGATCY 2 cut(s) 83, 368
MhlI GDGCHC 4 cut(s) 190, 521, 665, 692
MlsI TGGCCA 2 cut(s) 603, 1433
MluCI AATT 6 cut(s) 200, 246, 302, 428, 752, 1306
MluI ACGCGT 1 cut(s) 1266
MluNI TGGCCA 2 cut(s) 603, 1433
MlyI GAGTC 3 cut(s) 41, 173, 413
MmeI TCCRAC 8 cut(s) 69, 381, 561, 891, 918, 945, 972, 1127
MnlI CCTC 8 cut(s) 97, 972, 1002, 1033, 1183, 1322, 1405, 1408
Mox20I TGGCCA 2 cut(s) 603, 1433
MscI TGGCCA 2 cut(s) 603, 1433
MseI TTAA 3 cut(s) 327, 1263, 1394
MslI CAYNNNNRTG 2 cut(s) 240, 557
Msp20I TGGCCA 2 cut(s) 603, 1433
MspA1I CMGCKG 2 cut(s) 53, 1139
MspI CCGG 3 cut(s) 693, 747, 854
MspR9I CCNGG 6 cut(s) 275, 747, 748, 801, 854, 855
MvaI CCWGG 2 cut(s) 275, 801
MvnI CGCG 2 cut(s) 172, 1268
NciI CCSGG 4 cut(s) 747, 748, 854, 855
NcoI CCATGG 1 cut(s) 485
NdeII GATC 3 cut(s) 83, 368, 1132
NlaIII CATG 6 cut(s) 182, 284, 298, 489, 700, 727
NlaIV GGNNCC 3 cut(s) 13, 85, 1044
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 3 cut(s) 182, 700, 727
OliI CACNNNNGTG 1 cut(s) 557
PasI CCCWGGG 1 cut(s) 800
PfeI GAWTC 3 cut(s) 110, 888, 1214
PleI GAGTC 3 cut(s) 41, 172, 412
PpsI GAGTC 3 cut(s) 41, 172, 412
Psp124BI GAGCTC 4 cut(s) 190, 521, 665, 692
Psp1406I AACGTT 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 273, 799
PspGI CCWGG 2 cut(s) 273, 799
PspN4I GGNNCC 3 cut(s) 13, 85, 1044
PspPI GGNCC 1 cut(s) 277
PsrI GAACNNNNNNTAC 2 cut(s) 808, 840
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 2 cut(s) 83, 368
RsaI GTAC 2 cut(s) 216, 1207
RsaNI GTAC 2 cut(s) 215, 1206
RseI CAYNNNNRTG 2 cut(s) 240, 557
SacI GAGCTC 4 cut(s) 190, 521, 665, 692
SaqAI TTAA 3 cut(s) 327, 1263, 1394
Sau3AI GATC 3 cut(s) 83, 368, 1132
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 3 cut(s) 41, 173, 413
ScrFI CCNGG 6 cut(s) 275, 747, 748, 801, 854, 855
SduI GDGCHC 4 cut(s) 190, 521, 665, 692
SfaNI GCATC 4 cut(s) 1012, 1172, 1293, 1469
SfcI CTRYAG 3 cut(s) 363, 522, 582
SmaI CCCGGG 2 cut(s) 748, 855
SmiMI CAYNNNNRTG 2 cut(s) 240, 557
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 6 cut(s) 200, 246, 302, 428, 752, 1306
SsiI CCGC 6 cut(s) 51, 172, 651, 1139, 1298, 1334
SspI AATATT 1 cut(s) 1323
SspMI CTAG 2 cut(s) 813, 1047
SstI GAGCTC 4 cut(s) 190, 521, 665, 692
StyD4I CCNGG 6 cut(s) 273, 745, 746, 799, 852, 853
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 4 cut(s) 260, 953, 1001, 1228
TaiI ACGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 265, 506
TasI AATT 6 cut(s) 200, 246, 302, 428, 752, 1306
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 3 cut(s) 110, 888, 1214
Tru1I TTAA 3 cut(s) 327, 1263, 1394
Tru9I TTAA 3 cut(s) 327, 1263, 1394
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 9 cut(s) 53, 175, 338, 359, 362, 1050, 1168, 1255, 1258
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 8 cut(s) 89, 132, 165, 258, 1029, 1316, 1368, 1418
TspMI CCCGGG 2 cut(s) 746, 853
TspRI CASTG 1 cut(s) 313
XapI RAATTY 4 cut(s) 246, 302, 428, 1306
XceI RCATGY 3 cut(s) 182, 700, 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 1143
XmaI CCCGGG 2 cut(s) 746, 853
XspI CTAG 2 cut(s) 813, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.