pycom15g39240

YacP-like NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003444
Physical Location & Seq
Reverse (-)
39111136 .. 39112711
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g39240.1

Sequence Viewer

Length: 582 bp
ATGAAATCGGCGCCATGGTCGTCCTTAGTGTTTCAGTTGCCACGAGGTTGCTATGGCTGTTCTTGTGCCCAGTTTCAGTTTGTTGTAATGGCCAAGGGCAAGAACAAGTCTCAACAATCATCGCCTCCTCCTCCTTTGGGGTCGGAGGCGCCAACTCCTCCGAGGATTACATCAAATGTGAGGCAGAATTTACAGCTTTTAAAGTTATGGAAGGATTACCAAAACAGAAAGTCTAGCACACCTAAGCACTCTACTAGATACCGCCGAAAGAAGGTCCCCAAGGAACAGCTTCCCCAAGACCCTGACCTCTACCGCGATCCAACCACCACCCTCTATTATACTAACCAGGGTTGGGACATTGCTGTGCCCGTCTTGCTTGTTGATGGATATAACGTCTGCGGTTACTGGGCCAAGCTCAAGAAGCATTTTATAAATGGGAGACTTGATGTTGCTCGCCAAAAGTTAATCGATGAACTTGTTACTTTCAGCATGCTAAGAGAGGTGAAAGTGGTAGCTGTATTCGATGCCATGATGTCTGGACTCCCCACACACAAGGAAGATTTTAATGGGTACAGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN_YacP

Protein Analysis

194

Amino Acids

22.06

Weight (kDa)

9.7

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN_YacP PF05991 125 - 185 8.2e-16 YacP-like NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AccB1I GGYRCC 2 cut(s) 10, 148
AccII CGCG 1 cut(s) 315
AciI CCGC 3 cut(s) 262, 313, 399
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 187
AcyI GRCGYC 2 cut(s) 11, 149
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 3 cut(s) 137, 271, 352
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 4 cut(s) 196, 289, 415, 515
AluI AGCT 4 cut(s) 196, 289, 415, 515
Alw26I GTCTC 2 cut(s) 114, 433
AlwI GGATC 1 cut(s) 311
AoxI GGCC 2 cut(s) 90, 408
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 13, 151
AspS9I GGNCC 2 cut(s) 274, 408
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 2 cut(s) 70, 369
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 2 cut(s) 10, 148
BauI CACGAG 1 cut(s) 42
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 114, 433
BfaI CTAG 2 cut(s) 234, 255
BfoI RGCGCY 2 cut(s) 14, 152
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 274, 408
BmiI GGNNCC 3 cut(s) 12, 150, 276
BmrFI CCNGG 1 cut(s) 347
BmrI ACTGGG 2 cut(s) 64, 415
BmsI GCATC 1 cut(s) 514
BmuI ACTGGG 2 cut(s) 64, 415
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 11, 149
BsaJI CCNNGG 5 cut(s) 14, 93, 161, 279, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 271, 352
Bse1I ACTGG 2 cut(s) 70, 410
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 5 cut(s) 14, 93, 161, 279, 346
BseLI CCNNNNNNNGG 3 cut(s) 137, 271, 352
BseMI GCAATG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 70, 410
BseRI GAGGAG 3 cut(s) 117, 120, 147
BseSI GKGCMC 2 cut(s) 70, 369
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 92, 410
BshNI GGYRCC 2 cut(s) 10, 148
BshVI ATCGAT 1 cut(s) 468
BslFI GGGAC 2 cut(s) 260, 368
BslI CCNNNNNNNGG 3 cut(s) 137, 271, 352
BsmAI GTCTC 2 cut(s) 114, 433
BsmFI GGGAC 2 cut(s) 260, 368
BsnI GGCC 2 cut(s) 92, 410
Bsp1286I GDGCHC 2 cut(s) 70, 369
Bsp143I GATC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 3 cut(s) 262, 313, 399
BspANI GGCC 2 cut(s) 92, 410
BspDI ATCGAT 1 cut(s) 468
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 12, 150, 276
BspPI GGATC 1 cut(s) 311
BspT107I GGYRCC 2 cut(s) 10, 148
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 2 cut(s) 70, 410
BssECI CCNNGG 5 cut(s) 14, 93, 161, 279, 346
BssMI GATC 1 cut(s) 316
BssNI GRCGYC 2 cut(s) 11, 149
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 3 cut(s) 14, 93, 279
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 575
BstACI GRCGYC 2 cut(s) 11, 149
BstC8I GCNNGC 2 cut(s) 454, 491
BstDEI CTNAG 3 cut(s) 25, 243, 494
BstDSI CCRYGG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 2 cut(s) 14, 152
BstHHI GCGC 2 cut(s) 13, 151
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 2 cut(s) 114, 433
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 373, 421
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 345
BstSLI GKGCMC 2 cut(s) 70, 369
BstUI CGCG 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 468
BsuRI GGCC 2 cut(s) 92, 410
BsuTUI ATCGAT 1 cut(s) 468
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 454, 491
CfoI GCGC 2 cut(s) 13, 151
Cfr13I GGNCC 2 cut(s) 274, 408
ClaI ATCGAT 1 cut(s) 468
Csp6I GTAC 1 cut(s) 571
CviAII CATG 3 cut(s) 15, 490, 529
CviJI RGCY 7 cut(s) 57, 92, 196, 289, 410, 415, 515
CviKI_1 RGCY 7 cut(s) 57, 92, 196, 289, 410, 415, 515
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 3 cut(s) 25, 243, 494
DinI GGCGCC 2 cut(s) 12, 150
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraI TTTAAA 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 90
Eco130I CCWWGG 3 cut(s) 14, 93, 279
Eco47I GGWCC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 3 cut(s) 14, 93, 279
EgeI GGCGCC 2 cut(s) 12, 150
EheI GGCGCC 2 cut(s) 12, 150
ErhI CCWWGG 3 cut(s) 14, 93, 279
FaeI CATG 3 cut(s) 18, 493, 532
FaiI YATR 9 cut(s) 16, 54, 208, 339, 390, 431, 491, 530, 580
FaqI GGGAC 2 cut(s) 260, 368
FatI CATG 3 cut(s) 14, 489, 528
FspBI CTAG 2 cut(s) 234, 255
GlaI GCGC 2 cut(s) 12, 150
HaeII RGCGCY 2 cut(s) 14, 152
HaeIII GGCC 2 cut(s) 92, 410
HhaI GCGC 2 cut(s) 13, 151
Hin1I GRCGYC 2 cut(s) 11, 149
Hin1II CATG 3 cut(s) 18, 493, 532
Hin6I GCGC 2 cut(s) 11, 149
HinP1I GCGC 2 cut(s) 11, 149
HinfI GANTC 1 cut(s) 540
HphI GGTGA 1 cut(s) 514
Hpy188I TCNGA 2 cut(s) 145, 162
Hpy188III TCNNGA 2 cut(s) 418, 537
HpyAV CCTTC 2 cut(s) 205, 265
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4IV ACGT 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 421
HpyF3I CTNAG 3 cut(s) 25, 243, 494
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 2 cut(s) 11, 149
Hsp92II CATG 3 cut(s) 18, 493, 532
HspAI GCGC 2 cut(s) 11, 149
KasI GGCGCC 2 cut(s) 10, 148
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 6 cut(s) 83, 315, 332, 359, 391, 522
LweI GCATC 1 cut(s) 514
MaeI CTAG 2 cut(s) 234, 255
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 401, 478
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 70, 369
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 92
Mly113I GGCGCC 2 cut(s) 11, 149
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 2 cut(s) 123, 344
Mox20I TGGCCA 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 92
MseI TTAA 3 cut(s) 200, 464, 564
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 373, 421
NarI GGCGCC 2 cut(s) 11, 149
NcoI CCATGG 1 cut(s) 14
NdeII GATC 1 cut(s) 316
NlaIII CATG 3 cut(s) 18, 493, 532
NlaIV GGNNCC 3 cut(s) 12, 150, 276
NspI RCATGY 1 cut(s) 493
PaeI GCATGC 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 288
PleI GAGTC 1 cut(s) 534
PluTI GGCGCC 2 cut(s) 14, 152
PpsI GAGTC 1 cut(s) 534
PpuMI RGGWCCY 1 cut(s) 274
PsiI TTATAA 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 3 cut(s) 12, 150, 276
PspPI GGNCC 2 cut(s) 274, 408
PspPPI RGGWCCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 3 cut(s) 200, 464, 564
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 2 cut(s) 274, 408
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 2 cut(s) 70, 369
SfaNI GCATC 1 cut(s) 514
SfoI GGCGCC 2 cut(s) 12, 150
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SphI GCATGC 1 cut(s) 493
Sse9I AATT 1 cut(s) 187
SsiI CCGC 3 cut(s) 262, 313, 399
SspDI GGCGCC 2 cut(s) 10, 148
SspMI CTAG 2 cut(s) 234, 255
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 3 cut(s) 14, 93, 279
TaaI ACNGT 1 cut(s) 575
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 468, 522
TasI AATT 1 cut(s) 187
Tru1I TTAA 3 cut(s) 200, 464, 564
Tru9I TTAA 3 cut(s) 200, 464, 564
TspDTI ATGAA 2 cut(s) 17, 486
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 2 cut(s) 234, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.