Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Reverse (-)

758693 .. 761064

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCCTTAACGAAATCTTCAGAATCAGTTTTCACTGAAGAAGAAGAAGAAGATTCCTTTAGCGGTCGATACACGTTATGGATCAAAGAAGCATTAGAGGAGCTTCCACACAATTTCACAATCACCGACCCGTTTATTTCGGGTCACCCGATTGTTTTCGCGAGCTTAGGGTTTTTGAAAATGACTGGCTATTCACGAGAAGAAGTGATCGGAAGAAACGGTAAAGTTTTTCAAGGACCTAAGACTAATCGAAGATCGATCATGGAGATTCGTGAAGCGATTCGTGAAGAGAGATCAGTGCAAGTGAGCTTGTTGAATTATCGTAAATCTGGGTCTCCGTTTTGGATGTTGTTTCATATGTGTCCTGTTTTTGGGAAAGATGATGGTAAAGTCACCAATTTTGTGGCGGTTCAGGTCCCGATTTCGGGACGAGAACATCATCGGAAGAAGTTGAGAAATGTCGGAGATTTGTCGTCGGATACTTCTCCGACATTTGGTTCTTGTCGAAGAGAGGTTTGTTTTGGTAATTTCGTGTGTCAGGATCGAGCTTTACCAGTGGAATGTGATGATGATGAACAAGGATTAGAGGATTGGGAACAGTGTGAAGCGAGTGAGTCCGAGAAGCTGAAAGCTACGGAAGCTATTAACAATGTGTTATCTATCTTAGTGCATTACAGCGAGTTGAGTGGTAGATTAGTCTGCGGAAAGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATTAACCAATCCATGCTTACCAGACATGCCTATCATTTATGCGAGTGATGCCTTTTTGACACTGACCGGTTACAAGAGACAGGAAGTGTTGGGACAAAACTGTAGATTTCTGAGTGGGGTTGATACTGATTCCTCAGTACTATACGAGATGAAGGAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGTAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGACAGCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGACCAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAGAGTTGCGGTTAGAAGCTCATTGATGGTGACATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

399

Amino Acids

44.89

Weight (kDa)

6.68

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_9	PF13426	49 - 138	1.3e-16	PAS domain
PAS_9	PF13426	263 - 360	1.2e-19	PAS domain
PAS	PF00989	273 - 358	1.2e-07	PAS fold
PAS_3	PF08447	273 - 358	1.4e-07	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	161
AciI	CCGC	6 cut(s)	63, 407, 702, 709, 1157, 1169
AclWI	GGATC	2 cut(s)	89, 549
AcuI	CTGAAG	2 cut(s)	57, 1035
AfaI	GTAC	2 cut(s)	713, 924
AfiI	CCNNNNNNNGG	4 cut(s)	371, 424, 425, 494
AflIII	ACRYGT	1 cut(s)	72
AgeI	ACCGGT	1 cut(s)	851
AgsI	TTSAA	4 cut(s)	178, 233, 316, 1082
Alw21I	GWGCWC	1 cut(s)	1010
Alw26I	GTCTC	5 cut(s)	339, 856, 1117, 1124, 1129
AlwI	GGATC	2 cut(s)	89, 549
AsiGI	ACCGGT	1 cut(s)	851
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	236, 415
AsuHPI	GGTGA	4 cut(s)	115, 137, 385, 1026
AvaII	GGWCC	2 cut(s)	236, 415
BanII	GRGCYC	1 cut(s)	1010
BauI	CACGAG	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	1010
BccI	CCATC	2 cut(s)	377, 1180
BciVI	GTATCC	1 cut(s)	472
BcoDI	GTCTC	5 cut(s)	339, 856, 1117, 1124, 1129
BfmI	CTRYAG	1 cut(s)	886
BfuI	GTATCC	1 cut(s)	472
BmcAI	AGTACT	1 cut(s)	924
Bme18I	GGWCC	2 cut(s)	236, 415
BmgT120I	GGNCC	2 cut(s)	236, 415
BmiI	GGNNCC	1 cut(s)	417
BmsI	GCATC	2 cut(s)	823, 954
Bpu10I	CCTNAGC	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	257
BsaI	GGTCTC	2 cut(s)	339, 1117
BsaWI	WCCGGW	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	4 cut(s)	371, 424, 425, 494
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	3 cut(s)	190, 554, 1037
BseCI	ATCGAT	1 cut(s)	257
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	4 cut(s)	371, 424, 425, 494
BseMII	CTCAG	4 cut(s)	887, 933, 1112, 1133
BseNI	ACTGG	3 cut(s)	190, 554, 1037
BseRI	GAGGAG	2 cut(s)	113, 738
Bsh1236I	CGCG	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	67
BshTI	ACCGGT	1 cut(s)	851
BshVI	ATCGAT	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	1010
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	4 cut(s)	401, 441, 891, 969
BslI	CCNNNNNNNGG	4 cut(s)	371, 424, 425, 494
BsmAI	GTCTC	5 cut(s)	339, 856, 1117, 1124, 1129
BsmBI	CGTCTC	1 cut(s)	1124
BsmFI	GGGAC	4 cut(s)	401, 441, 891, 969
BsmI	GAATGC	1 cut(s)	947
Bso31I	GGTCTC	2 cut(s)	339, 1117
Bsp1286I	GDGCHC	1 cut(s)	1010
Bsp143I	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
Bsp68I	TCGCGA	1 cut(s)	161
BspACI	CCGC	6 cut(s)	63, 407, 702, 709, 1157, 1169
BspCNI	CTCAG	4 cut(s)	888, 932, 1113, 1134
BspDI	ATCGAT	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	89, 549
BspTNI	GGTCTC	2 cut(s)	339, 1117
BsrFI	RCCGGY	1 cut(s)	851
BsrI	ACTGG	3 cut(s)	190, 554, 1037
BssAI	RCCGGY	1 cut(s)	851
BssMI	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst4CI	ACNGT	5 cut(s)	221, 600, 887, 970, 989
Bst6I	CTCTTC	2 cut(s)	282, 502
BstC8I	GCNNGC	2 cut(s)	163, 719
BstDEI	CTNAG	8 cut(s)	166, 240, 664, 737, 896, 919, 1121, 1142
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	351
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	6 cut(s)	84, 210, 257, 261, 296, 544
BstMAI	GTCTC	5 cut(s)	339, 856, 1117, 1124, 1129
BstMBI	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 833
BstNSI	RCATGY	2 cut(s)	814, 1197
BstPI	GGTNACC	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	886
BstUI	CGCG	1 cut(s)	161
BstXI	CCANNNNNNTGG	1 cut(s)	403
Bsu15I	ATCGAT	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	472
BsuTUI	ATCGAT	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	6 cut(s)	33, 303, 561, 605, 845, 975
BtuMI	TCGCGA	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	163, 719
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	2 cut(s)	236, 415
ClaI	ATCGAT	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	712, 923
CspAI	ACCGGT	1 cut(s)	851
CviAII	CATG	5 cut(s)	262, 798, 811, 963, 1194
CviQI	GTAC	2 cut(s)	712, 923
DdeI	CTNAG	8 cut(s)	166, 240, 664, 737, 896, 919, 1121, 1142
DpnI	GATC	6 cut(s)	83, 209, 256, 260, 295, 543
DpnII	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
Eam1104I	CTCTTC	2 cut(s)	282, 502
EarI	CTCTTC	2 cut(s)	282, 502
Ecl136II	GAGCTC	1 cut(s)	1008
Eco24I	GRGCYC	1 cut(s)	1010
Eco31I	GGTCTC	2 cut(s)	339, 1117
Eco47I	GGWCC	2 cut(s)	236, 415
Eco53kI	GAGCTC	1 cut(s)	1008
Eco57I	CTGAAG	2 cut(s)	57, 1035
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	1008
EcoO109I	RGGNCCY	2 cut(s)	236, 415
EcoO65I	GGTNACC	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	947
EcoT38I	GRGCYC	1 cut(s)	1010
Esp3I	CGTCTC	1 cut(s)	1124
FaeI	CATG	5 cut(s)	265, 801, 814, 966, 1197
FaqI	GGGAC	4 cut(s)	401, 441, 891, 969
FatI	CATG	5 cut(s)	261, 797, 810, 962, 1193
FauNDI	CATATG	1 cut(s)	357
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	1010
HapII	CCGG	1 cut(s)	852
Hin1II	CATG	5 cut(s)	265, 801, 814, 966, 1197
HinfI	GANTC	8 cut(s)	23, 53, 268, 280, 614, 768, 914, 1018
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	4 cut(s)	115, 137, 385, 1026
Hpy188I	TCNGA	8 cut(s)	22, 212, 444, 464, 478, 489, 619, 897
Hpy188III	TCNNGA	7 cut(s)	160, 195, 272, 284, 418, 426, 539
Hpy99I	CGWCG	2 cut(s)	478, 748
HpyAV	CCTTC	1 cut(s)	931
HpyCH4III	ACNGT	5 cut(s)	221, 600, 887, 970, 989
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	5 cut(s)	301, 670, 945, 966, 973
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 833
HpyF3I	CTNAG	8 cut(s)	166, 240, 664, 737, 896, 919, 1121, 1142
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	265, 801, 814, 966, 1197
Kzo9I	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
LmnI	GCTCC	1 cut(s)	100
LweI	GCATC	2 cut(s)	823, 954
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	5 cut(s)	143, 391, 854, 989, 1189
MalI	GATC	6 cut(s)	83, 209, 256, 260, 295, 543
MboI	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
MhlI	GDGCHC	1 cut(s)	1010
MluCI	AATT	6 cut(s)	112, 316, 397, 526, 982, 1110
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	3 cut(s)	442, 456, 512
MnlI	CCTC	5 cut(s)	91, 505, 580, 716, 928
Mph1103I	ATGCAT	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	5 cut(s)	8, 645, 788, 950, 1113
MspI	CCGG	1 cut(s)	852
Mva1269I	GAATGC	1 cut(s)	947
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	638, 833
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
NlaIII	CATG	5 cut(s)	265, 801, 814, 966, 1197
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	3 cut(s)	143, 391, 1189
NruI	TCGCGA	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	947
NspI	RCATGY	2 cut(s)	814, 1197
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	947
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	7 cut(s)	23, 53, 268, 280, 768, 914, 1018
PinAI	ACCGGT	1 cut(s)	851
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
PpuMI	RGGWCCY	2 cut(s)	236, 415
Psp124BI	GAGCTC	1 cut(s)	1010
Psp5II	RGGWCCY	2 cut(s)	236, 415
PspEI	GGTNACC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	236, 415
PspPPI	RGGWCCY	2 cut(s)	236, 415
RruI	TCGCGA	1 cut(s)	161
RsaI	GTAC	2 cut(s)	713, 924
RsaNI	GTAC	2 cut(s)	712, 923
SacI	GAGCTC	1 cut(s)	1010
SaqAI	TTAA	5 cut(s)	8, 645, 788, 950, 1113
Sau3AI	GATC	6 cut(s)	81, 207, 254, 258, 293, 541
Sau96I	GGNCC	2 cut(s)	236, 415
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	1010
SfaNI	GCATC	2 cut(s)	823, 954
SfcI	CTRYAG	1 cut(s)	886
SinI	GGWCC	2 cut(s)	236, 415
Sse9I	AATT	6 cut(s)	112, 316, 397, 526, 982, 1110
SsiI	CCGC	6 cut(s)	63, 407, 702, 709, 1157, 1169
SstI	GAGCTC	1 cut(s)	1010
TaaI	ACNGT	5 cut(s)	221, 600, 887, 970, 989
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	5 cut(s)	67, 250, 257, 505, 544
TasI	AATT	6 cut(s)	112, 316, 397, 526, 982, 1110
TatI	WGTACW	1 cut(s)	922
TfiI	GAWTC	7 cut(s)	23, 53, 268, 280, 768, 914, 1018
Tru1I	TTAA	5 cut(s)	8, 645, 788, 950, 1113
Tru9I	TTAA	5 cut(s)	8, 645, 788, 950, 1113
TscAI	CASTG	6 cut(s)	40, 303, 561, 605, 852, 975
TseFI	GTSAC	3 cut(s)	143, 391, 1189
Tsp45I	GTSAC	3 cut(s)	143, 391, 1189
TspDTI	ATGAA	3 cut(s)	344, 588, 950
TspGWI	ACGGA	2 cut(s)	327, 650
TspRI	CASTG	6 cut(s)	40, 303, 561, 605, 852, 975
VpaK11BI	GGWCC	2 cut(s)	236, 415
XceI	RCATGY	2 cut(s)	814, 1197
XmnI	GAANNNNTTC	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	924
Zsp2I	ATGCAT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.