Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Forward (+)

30846685 .. 30850598

Gene Structure 3914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31970.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAATCGGAGTTGGGTTTAATAGAGCAATCGATCAATAGTCGTTACTCGCTTTGGGTTCTAGAAGCTTTGAACGAGTTGCCGGAGAGTTTTACGGTGACTGATCCTTGTATTTCCGGCCAGCCCATCGTTTTTGCGAGCAAAGGGTTCCTGAAAATGATGGGGTATTCGAAAAGTGAGGTGATTGGGAAGAATGGGAGGATATTTCAAGGGCCAGGGACTTGTAGAAGGTCTGTAATGGAAATAAGGGAGGCTATTAGAGAAGAGAGAGGTGTTCAGATTAATTTGGTGAATTATAGGAGGGATGGGACACCCTTTTGGATGCTGTTTCATATGTGCCCTGTGTTTAGCAAAGAGGATGGGAGAGTGATTCATTTTGTGGGAGTTCAGGTTCCGATTTTGCAAAAACCGAGGAGGAGGAATGGGGTTGGTTTGGTGTATGAGGATGAGAGTAGGATGATTGAGAGTGTTTATGGGTCTTGTAGGAGAGAAGTGTGCTCGGATGCTATGGTGGATTTGGGGCGTGCTTTGTCTCTGGAGTGTGCGTTGGATGATGATGCTGATCATAGAGGAGTGCAGATTGAAGATACATGTGAGGCAAGTGAGTTAGAGAAGCGGAGAGCTGTGTCTGCCATGAATAACATCTTGTCTGTGCTAACATATTATAGCGAGTCAACAGGCAGACTGGTGTGTGGAAAGAGATGCAGCTTAACTGGAACAGATCCGCACTTACCTGACATGCCTATAGTTTACGCAAGTGAGGCCTTCTTCAAATTGACAGGTTATGCCAGACACGAAGTCTTGGGACGCAATTGTAGATTTTTAAGCGGGGAGGATACAGATTCCTCTGCAATATATCGGGTAAAGGAAAGCGTTCAGAATGAAAAAGCATGCACAGTACGTATCTTGAATTACAGGAAGGATAAGAGTTCATTTTGGAATCTTCTTCATATATCACCAATTCGTAATGCTACTGGCAAGATTGCATACTTTGTGGGTGTTCAGATGGAAGAAGCGTGTAAGAACCAGGATGGGCATGGGCTAAGCCCTGAGATGAGGCAGCTGAGCGCCGTTGGAGCCGTCAGGATTGCAGTGAGAAGTTTATCAATGGGTGCCGGCACATCCAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

378

Amino Acids

42.17

Weight (kDa)

7.51

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_9	PF13426	41 - 130	1.9e-16	PAS domain
PAS	PF00989	43 - 129	1.1e-06	PAS fold
PAS_3	PF08447	43 - 129	2.2e-06	PAS fold
PAS_9	PF13426	258 - 356	1.4e-17	PAS domain
PAS	PF00989	270 - 356	1.3e-07	PAS fold
PAS_3	PF08447	270 - 355	6.5e-06	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1112
AciI	CCGC	3 cut(s)	616, 725, 828
AclWI	GGATC	2 cut(s)	98, 716
AcoI	YGGCCR	1 cut(s)	118
AfaI	GTAC	1 cut(s)	900
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	5 cut(s)	73, 209, 584, 772, 910
AhdI	GACNNNNNGTC	1 cut(s)	797
AjnI	CCWGG	2 cut(s)	214, 1026
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	4 cut(s)	68, 623, 708, 1063
AluI	AGCT	4 cut(s)	68, 623, 708, 1063
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	2 cut(s)	98, 716
AoxI	GGCC	3 cut(s)	118, 212, 762
ApeKI	GCWGC	2 cut(s)	705, 1060
AseI	ATTAAT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	873
AspLEI	GCGC	1 cut(s)	1070
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	4 cut(s)	109, 193, 301, 948
AsuII	TTCGAA	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	1112
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	717, 1072
BccI	CCATC	6 cut(s)	134, 154, 299, 353, 1000, 1025
BceAI	ACGGC	2 cut(s)	1055, 1064
BciT130I	CCWGG	2 cut(s)	216, 1028
BciVI	GTATCC	1 cut(s)	829
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	1071
BfuI	GTATCC	1 cut(s)	829
BisI	GCNGC	2 cut(s)	706, 1061
BlpI	GCTNAGC	2 cut(s)	1043, 1064
BlsI	GCNGC	2 cut(s)	707, 1062
Bme1390I	CCNGG	2 cut(s)	216, 1028
BmeRI	GACNNNNNGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	4 cut(s)	149, 393, 1078, 1114
BmrFI	CCNGG	2 cut(s)	216, 1028
BmsI	GCATC	4 cut(s)	312, 493, 547, 692
BpmI	CTGGAG	1 cut(s)	557
Bpu1102I	GCTNAGC	2 cut(s)	1043, 1064
Bpu14I	TTCGAA	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	215, 410
BsaXI	ACNNNNNCTCC	4 cut(s)	375, 405, 530, 560
Bse118I	RCCGGY	1 cut(s)	1115
Bse1I	ACTGG	3 cut(s)	690, 718, 979
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	216, 1028
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	215, 410
BseGI	GGATG	9 cut(s)	310, 327, 364, 451, 462, 508, 556, 1036, 1121
BseJI	GATNNNNATC	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	1041, 1055
BseNI	ACTGG	3 cut(s)	690, 718, 979
BseRI	GAGGAG	3 cut(s)	427, 430, 585
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	717, 1072
BsgI	GTGCAG	1 cut(s)	596
BshFI	GGCC	3 cut(s)	120, 214, 764
BshNI	GGYRCC	1 cut(s)	1112
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	3 cut(s)	83, 117, 1116
BslFI	GGGAC	3 cut(s)	232, 322, 819
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	3 cut(s)	232, 322, 819
BsnI	GGCC	3 cut(s)	120, 214, 764
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	341, 500
Bsp143I	GATC	4 cut(s)	33, 103, 562, 721
Bsp1720I	GCTNAGC	2 cut(s)	1043, 1064
BspACI	CCGC	3 cut(s)	616, 725, 828
BspANI	GGCC	3 cut(s)	120, 214, 764
BspCNI	CTCAG	2 cut(s)	1042, 1056
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	149, 393, 1078, 1114
BspPI	GGATC	2 cut(s)	98, 716
BspT104I	TTCGAA	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	1112
BsrFI	RCCGGY	1 cut(s)	1115
BsrI	ACTGG	3 cut(s)	690, 718, 979
BssAI	RCCGGY	1 cut(s)	1115
BssECI	CCNNGG	2 cut(s)	215, 410
BssMI	GATC	4 cut(s)	33, 103, 562, 721
Bst2UI	CCWGG	2 cut(s)	216, 1028
Bst4CI	ACNGT	2 cut(s)	97, 898
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	902
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	5 cut(s)	122, 139, 525, 892, 1117
BstDEI	CTNAG	3 cut(s)	1043, 1050, 1064
BstF5I	GGATG	9 cut(s)	310, 327, 364, 451, 462, 508, 556, 1036, 1121
BstH2I	RGCGCY	1 cut(s)	1071
BstHHI	GCGC	1 cut(s)	1070
BstKTI	GATC	4 cut(s)	36, 106, 565, 724
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	4 cut(s)	33, 103, 562, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 761, 1076
BstNI	CCWGG	2 cut(s)	216, 1028
BstNSI	RCATGY	3 cut(s)	594, 742, 894
BstSCI	CCNGG	2 cut(s)	214, 1026
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	341
BstSNI	TACGTA	1 cut(s)	902
BstV1I	GCAGC	2 cut(s)	717, 1072
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
Bsu15I	ATCGAT	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	3 cut(s)	120, 214, 764
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	9 cut(s)	310, 327, 364, 451, 462, 508, 556, 1036, 1121
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	1 cut(s)	1098
Cac8I	GCNNGC	5 cut(s)	122, 139, 525, 892, 1117
CfoI	GCGC	1 cut(s)	1070
Cfr10I	RCCGGY	1 cut(s)	1115
Cfr13I	GGNCC	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	1 cut(s)	816
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	5 cut(s)	591, 634, 739, 891, 1037
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	3 cut(s)	1043, 1050, 1064
DpnI	GATC	4 cut(s)	35, 105, 564, 723
DpnII	GATC	4 cut(s)	33, 103, 562, 721
DriI	GACNNNNNGTC	1 cut(s)	797
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	258
Eam1105I	GACNNNNNGTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	258
Eco105I	TACGTA	1 cut(s)	902
Eco147I	AGGCCT	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	214, 1026
FaeI	CATG	5 cut(s)	594, 637, 742, 894, 1040
FaqI	GGGAC	3 cut(s)	232, 322, 819
FatI	CATG	5 cut(s)	590, 633, 738, 890, 1036
FauI	CCCGC	1 cut(s)	821
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	706, 1061
FokI	GGATG	9 cut(s)	317, 334, 371, 458, 469, 515, 563, 1043, 1108
Fsp4HI	GCNGC	2 cut(s)	706, 1061
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	1069
GluI	GCNGC	2 cut(s)	706, 1061
GsuI	CTGGAG	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	1071
HaeIII	GGCC	3 cut(s)	120, 214, 764
HapII	CCGG	3 cut(s)	83, 117, 1116
HgaI	GACGC	1 cut(s)	816
HhaI	GCGC	1 cut(s)	1070
Hin1II	CATG	5 cut(s)	594, 637, 742, 894, 1040
Hin6I	GCGC	1 cut(s)	1068
HinP1I	GCGC	1 cut(s)	1068
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	5 cut(s)	5, 370, 671, 842, 940
HpaII	CCGG	3 cut(s)	83, 117, 1116
HphI	GGTGA	4 cut(s)	109, 193, 301, 948
Hpy166II	GTNNAC	2 cut(s)	675, 751
Hpy188I	TCNGA	6 cut(s)	10, 279, 396, 502, 879, 1005
Hpy188III	TCNNGA	6 cut(s)	62, 151, 536, 907, 1084, 1131
Hpy8I	GTNNAC	2 cut(s)	675, 751
HpyAV	CCTTC	3 cut(s)	222, 775, 913
HpyCH4III	ACNGT	2 cut(s)	97, 898
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	7 cut(s)	403, 577, 705, 851, 894, 986, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 761, 1076
HpyF3I	CTNAG	3 cut(s)	1043, 1050, 1064
HpySE526I	ACGT	1 cut(s)	901
Hsp92II	CATG	5 cut(s)	594, 637, 742, 894, 1040
HspAI	GCGC	1 cut(s)	1068
KroI	GCCGGC	1 cut(s)	1115
KroNI	GCCGGC	1 cut(s)	1117
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	33, 103, 562, 721
LmnI	GCTCC	1 cut(s)	1076
Lsp1109I	GCAGC	2 cut(s)	717, 1072
LweI	GCATC	4 cut(s)	312, 493, 547, 692
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	2 cut(s)	44, 97
MalI	GATC	4 cut(s)	35, 105, 564, 723
MboI	GATC	4 cut(s)	33, 103, 562, 721
MboII	GAAGA	7 cut(s)	202, 275, 596, 760, 935, 938, 1022
MfeI	CAATTG	1 cut(s)	811
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	2 cut(s)	341, 500
MluCI	AATT	6 cut(s)	283, 292, 773, 811, 910, 960
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	2 cut(s)	528, 1054
MroNI	GCCGGC	1 cut(s)	1115
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	4 cut(s)	20, 282, 710, 824
MspA1I	CMGCKG	1 cut(s)	1063
MspI	CCGG	3 cut(s)	83, 117, 1116
MspR9I	CCNGG	2 cut(s)	216, 1028
MunI	CAATTG	1 cut(s)	811
MvaI	CCWGG	2 cut(s)	216, 1028
MwoI	GCNNNNNNNGC	3 cut(s)	629, 761, 1076
NaeI	GCCGGC	1 cut(s)	1117
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	4 cut(s)	33, 103, 562, 721
NgoMIV	GCCGGC	1 cut(s)	1115
NlaIII	CATG	5 cut(s)	594, 637, 742, 894, 1040
NlaIV	GGNNCC	4 cut(s)	149, 393, 1078, 1114
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	3 cut(s)	594, 742, 894
NspV	TTCGAA	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	894
PceI	AGGCCT	1 cut(s)	764
PciI	ACATGT	1 cut(s)	590
PdiI	GCCGGC	1 cut(s)	1117
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	5, 370, 842, 940
PkrI	GCNGC	2 cut(s)	707, 1062
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Ppu21I	YACGTR	1 cut(s)	902
PscI	ACATGT	1 cut(s)	590
PshBI	ATTAAT	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	214, 1026
PspGI	CCWGG	2 cut(s)	214, 1026
PspN4I	GGNNCC	4 cut(s)	149, 393, 1078, 1114
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	1063
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
SaqAI	TTAA	4 cut(s)	20, 282, 710, 824
SatI	GCNGC	2 cut(s)	706, 1061
Sau3AI	GATC	4 cut(s)	33, 103, 562, 721
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	216, 1028
SduI	GDGCHC	2 cut(s)	341, 500
SfaNI	GCATC	4 cut(s)	312, 493, 547, 692
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	170
SnaBI	TACGTA	1 cut(s)	902
SphI	GCATGC	1 cut(s)	894
Sse9I	AATT	6 cut(s)	283, 292, 773, 811, 910, 960
SseBI	AGGCCT	1 cut(s)	764
SsiI	CCGC	3 cut(s)	616, 725, 828
SspMI	CTAG	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	764
StyD4I	CCNGG	2 cut(s)	214, 1026
TaaI	ACNGT	2 cut(s)	97, 898
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	2 cut(s)	32, 170
TasI	AATT	6 cut(s)	283, 292, 773, 811, 910, 960
TfiI	GAWTC	4 cut(s)	5, 370, 842, 940
Tru1I	TTAA	4 cut(s)	20, 282, 710, 824
Tru9I	TTAA	4 cut(s)	20, 282, 710, 824
TscAI	CASTG	1 cut(s)	1098
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	705, 1060
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	6 cut(s)	320, 362, 650, 897, 921, 938
TspRI	CASTG	1 cut(s)	1098
VspI	ATTAAT	1 cut(s)	282
XbaI	TCTAGA	1 cut(s)	61
XceI	RCATGY	3 cut(s)	594, 742, 894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.