Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8473601.1

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2027

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8473601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

gttgaggtgccacatgggattgggactgacgattttgaagaggagatggagtcggagttgggtttactagagcaatcgatcaacagtcgttactcgctttgcgtccaagaagctctgaacgaattgccggacagttttacggtgactgatccttatatttccggccaacccatcgtttttgcgagcaaagggttcctgaaaatgatggggtactcgaaaaccgaggtgattgggaggaatgggaggatatttcaagggccaggtacttgtagaaggtcggttatggaaataagggaggccattagagaagagagaggtattcagattaatttggtgaattataggagggatgggacacccttctggatgctctttcatatgttccctgtgtttagcaaagaggatgggagggtgattcattttgtgggagttcaagttcccattttgcgaaaaccgaggaggaggaatggggttggtttggtgtatgaggaggagagtagggtgaatgagagtgtttatgggtcttgtagaagagaagtgtgctctgattctttggtggatttgggcagtgctttgtctcttgagtgtgcactggatgatgctgataatagaggactggagattgaagagacgtgtgaggcaagtgaattagagaagcaaagagctgcgtcttccatgaataacatcttgtctgtgctaacacattatagcgagttaacaggcagactggtgtgtggaaagagatgcaacttaactggggtgggccttctcagttcatccttaaatatttctcttggtagaatcaaacaaagctttgtattaacagatccgcacttacctgacatgcctatagtttacgcaagtgaggccttcttcaaattgacaggttatgccagacacgaagtcatgggacgcaattgtagatttctaagtggcgaggatacggattcctcagcgacatatcgggtatatctctttttccgctatgattattggtcttcactgtgtgatttcattacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

340

Amino Acids

38.41

Weight (kDa)

5.2

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AciI	CCGC	2 cut(s)	830, 982
AclWI	GGATC	2 cut(s)	143, 821
AcoI	YGGCCR	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	1007
AfaI	GTAC	2 cut(s)	212, 265
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	5 cut(s)	38, 254, 434, 626, 877
AhdI	GACNNNNNGTC	1 cut(s)	902
AjiI	CACGTC	1 cut(s)	633
AjnI	CCWGG	1 cut(s)	259
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	113, 665, 813
AluI	AGCT	3 cut(s)	113, 665, 813
Alw21I	GWGCWC	2 cut(s)	545, 592
Alw26I	GTCTC	2 cut(s)	582, 623
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	143, 821
AoxI	GGCC	5 cut(s)	163, 257, 297, 763, 867
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	665
AseI	ATTAAT	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	257, 763
AsuHPI	GGTGA	5 cut(s)	154, 238, 346, 424, 514
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	2 cut(s)	663, 990
Bbv12I	GWGCWC	2 cut(s)	545, 592
BbvCI	CCTCAGC	1 cut(s)	952
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	5 cut(s)	40, 179, 199, 344, 398
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	934
BcoDI	GTCTC	2 cut(s)	582, 623
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	849
BfuI	GTATCC	1 cut(s)	934
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	261
BmeRI	GACNNNNNGTC	1 cut(s)	902
BmgBI	CACGTC	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	257, 763
BmiI	GGNNCC	2 cut(s)	9, 194
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	3 cut(s)	357, 589, 734
BmuI	ACTGGG	1 cut(s)	765
BpiI	GAAGAC	2 cut(s)	663, 990
BpmI	CTGGAG	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	952
BpuEI	CTTGAG	1 cut(s)	602
Bsa29I	ATCGAT	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	222, 455
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 41, 65, 71, 420, 450
Bse1I	ACTGG	4 cut(s)	597, 621, 732, 760
BseBI	CCWGG	1 cut(s)	261
BseCI	ATCGAT	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	222, 455
BseGI	GGATG	5 cut(s)	355, 372, 409, 601, 776
BseMII	CTCAG	2 cut(s)	784, 966
BseNI	ACTGG	4 cut(s)	597, 621, 732, 760
BseRI	GAGGAG	5 cut(s)	56, 472, 475, 503, 506
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	1 cut(s)	652
BshFI	GGCC	5 cut(s)	165, 259, 299, 765, 869
BshNI	GGYRCC	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	545, 592
BsiSI	CCGG	2 cut(s)	128, 162
BslFI	GGGAC	3 cut(s)	37, 367, 924
BsmAI	GTCTC	2 cut(s)	582, 623
BsmBI	CGTCTC	1 cut(s)	623
BsmFI	GGGAC	3 cut(s)	37, 367, 924
BsnI	GGCC	5 cut(s)	165, 259, 299, 765, 869
Bsp1286I	GDGCHC	2 cut(s)	545, 592
Bsp143I	GATC	3 cut(s)	78, 148, 826
BspACI	CCGC	2 cut(s)	830, 982
BspANI	GGCC	5 cut(s)	165, 259, 299, 765, 869
BspCNI	CTCAG	2 cut(s)	783, 965
BspDI	ATCGAT	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	9, 194
BspPI	GGATC	2 cut(s)	143, 821
BspT107I	GGYRCC	1 cut(s)	7
BsrI	ACTGG	4 cut(s)	597, 621, 732, 760
BssECI	CCNNGG	2 cut(s)	222, 455
BssMI	GATC	3 cut(s)	78, 148, 826
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	4 cut(s)	86, 134, 142, 1005
Bst6I	CTCTTC	4 cut(s)	33, 303, 526, 621
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	770, 929, 952
BstF5I	GGATG	5 cut(s)	355, 372, 409, 601, 776
BstKTI	GATC	3 cut(s)	81, 151, 829
BstMAI	GTCTC	2 cut(s)	582, 623
BstMBI	GATC	3 cut(s)	78, 148, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	2 cut(s)	663, 990
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
Bsu15I	ATCGAT	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	5 cut(s)	165, 259, 299, 765, 869
BsuTUI	ATCGAT	1 cut(s)	77
BtrI	CACGTC	1 cut(s)	633
BtsCI	GGATG	5 cut(s)	355, 372, 409, 601, 776
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	3 cut(s)	574, 590, 1001
Cac8I	GCNNGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	257, 763
ClaI	ATCGAT	1 cut(s)	77
CseI	GACGC	3 cut(s)	91, 657, 921
Csp6I	GTAC	2 cut(s)	211, 264
CviAII	CATG	4 cut(s)	14, 676, 844, 907
CviJI	RGCY	8 cut(s)	113, 165, 259, 299, 665, 765, 813, 869
CviKI_1	RGCY	8 cut(s)	113, 165, 259, 299, 665, 765, 813, 869
CviQI	GTAC	2 cut(s)	211, 264
DdeI	CTNAG	3 cut(s)	770, 929, 952
DpnI	GATC	3 cut(s)	80, 150, 828
DpnII	GATC	3 cut(s)	78, 148, 826
DraIII	CACNNNGTG	1 cut(s)	1007
DriI	GACNNNNNGTC	1 cut(s)	902
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	4 cut(s)	33, 303, 526, 621
Eam1105I	GACNNNNNGTC	1 cut(s)	902
EarI	CTCTTC	4 cut(s)	33, 303, 526, 621
Eco147I	AGGCCT	1 cut(s)	869
EcoRII	CCWGG	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	623
FaeI	CATG	4 cut(s)	17, 679, 847, 910
FaqI	GGGAC	3 cut(s)	37, 367, 924
FatI	CATG	4 cut(s)	13, 675, 843, 906
FauNDI	CATATG	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	5 cut(s)	362, 379, 416, 608, 763
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	666
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	5 cut(s)	165, 259, 299, 765, 869
HapII	CCGG	2 cut(s)	128, 162
HgaI	GACGC	3 cut(s)	91, 657, 921
Hin1II	CATG	4 cut(s)	17, 679, 847, 910
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	5 cut(s)	50, 415, 548, 801, 947
HpaI	GTTAAC	1 cut(s)	717
HpaII	CCGG	2 cut(s)	128, 162
HphI	GGTGA	5 cut(s)	154, 238, 346, 424, 514
Hpy166II	GTNNAC	4 cut(s)	65, 590, 717, 856
Hpy188I	TCNGA	4 cut(s)	55, 117, 324, 547
Hpy188III	TCNNGA	3 cut(s)	196, 364, 581
Hpy8I	GTNNAC	4 cut(s)	65, 590, 717, 856
HpyAV	CCTTC	4 cut(s)	267, 370, 776, 880
HpyCH4III	ACNGT	4 cut(s)	86, 134, 142, 1005
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	2 cut(s)	590, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	3 cut(s)	770, 929, 952
HpySE526I	ACGT	1 cut(s)	632
Hsp92II	CATG	4 cut(s)	17, 679, 847, 910
KspAI	GTTAAC	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	78, 148, 826
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	3 cut(s)	357, 589, 734
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	2 cut(s)	89, 142
MalI	GATC	3 cut(s)	80, 150, 828
MboI	GATC	3 cut(s)	78, 148, 826
MboII	GAAGA	7 cut(s)	50, 320, 543, 638, 663, 865, 990
MfeI	CAATTG	1 cut(s)	916
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	545, 592
MluCI	AATT	6 cut(s)	122, 328, 337, 647, 878, 916
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	33
MseI	TTAA	5 cut(s)	327, 716, 752, 782, 821
MspI	CCGG	2 cut(s)	128, 162
MspR9I	CCNGG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	866
NdeI	CATATG	1 cut(s)	378
NdeII	GATC	3 cut(s)	78, 148, 826
NlaIII	CATG	4 cut(s)	17, 679, 847, 910
NlaIV	GGNNCC	2 cut(s)	9, 194
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	869
PfeI	GAWTC	4 cut(s)	415, 548, 801, 947
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PshBI	ATTAAT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	9, 194
PspPI	GGNCC	2 cut(s)	257, 763
PsuI	RGATCY	1 cut(s)	826
RsaI	GTAC	2 cut(s)	212, 265
RsaNI	GTAC	2 cut(s)	211, 264
SaqAI	TTAA	5 cut(s)	327, 716, 752, 782, 821
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	3 cut(s)	78, 148, 826
Sau96I	GGNCC	2 cut(s)	257, 763
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	2 cut(s)	545, 592
SfaNI	GCATC	3 cut(s)	357, 589, 734
SfcI	CTRYAG	1 cut(s)	849
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	6 cut(s)	122, 328, 337, 647, 878, 916
SseBI	AGGCCT	1 cut(s)	869
SsiI	CCGC	2 cut(s)	830, 982
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	869
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	4 cut(s)	86, 134, 142, 1005
TaiI	ACGT	1 cut(s)	635
TaqI	TCGA	2 cut(s)	77, 215
TasI	AATT	6 cut(s)	122, 328, 337, 647, 878, 916
TfiI	GAWTC	4 cut(s)	415, 548, 801, 947
Tru1I	TTAA	5 cut(s)	327, 716, 752, 782, 821
Tru9I	TTAA	5 cut(s)	327, 716, 752, 782, 821
TscAI	CASTG	3 cut(s)	574, 597, 1008
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	5 cut(s)	365, 407, 692, 765, 1003
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	3 cut(s)	574, 597, 1008
VneI	GTGCAC	1 cut(s)	588
VspI	ATTAAT	1 cut(s)	327
XceI	RCATGY	1 cut(s)	847
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.