Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Forward (+)

5554626 .. 5558224

Gene Structure 3599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1079100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAATCGGAGCTGGGTTTAATCGAACAGTCGTTGATCAGCCGCTACTCTCTCTGTGTGCTCGAAACTCTGAGCGAATTGCCCGACAGCTTCACGATCACTGACCCTTCGATTTCCGGGCATCCAATCGTGTTTGCGAGTAAAGGGTTCCTGAAAATGTCGGGATATTCGAAGAACGAGGTGGTCGGGAGGAACGGCAGAGTGTTTCAGGGTCCGGGGACTTGCAGGCGGTCGGTCATGGAGGTCCGGGAGGCCATCAGGGAGGAGAGAGCTGTTCAGGTTAGTTTGCTGAATTATCGGAAAGATGGGACGCCGTTTTGGATGCTGTTTCATATGTGTCCTGTTTTTGGGAAGGAGGACGGGAGGGTGATTCATTTCGTGGGAGTTCAGGTTCCGATTTCGAGGAGGCCAAGGCGGTCTGGTGGGAGAAATGGTGTTGGTTTGTGTGAGGAGGGGTCTAGGATGAGTGATATTGTTTACGGGTCGTGTCGAAAAGAAGTGTTCTTTGATTCGTTGGTTGATTTGCGTCGTGTTTTGTCGTTGGAATCTGCATTGGATGATGCTGATAATAGAGGATTTGACATTGAAGAATCGTGCGAGGCAAGTGATGTAGAGAAGACGAGAGCTGCAACTGCGATTAATAACATCTTGTCCGTGCTAACGCACTATAGCGAGTCAATGGGCAGATTAGTTTGTGGGAAGAGATGCAGCTCATCAGGGGTGGGCCTTCTCAGTTCAGCCTTAAATATATCTCTTGGTAGAATCAAACAAAGTTTTGTATTAACTGATCCGAACTTACCAGACATGCCAATAGTTTATGCAAGTGATGCCTTCTTCAAACTGACAGGTTATGCCAGACATGAAGTTTTGGGGCGCAATTGTAGATTTTTAAGTGGGGCGGAGACCGATTCCTCAATGATATATCGGATAAAGGAAAGCGTTCAAAACAAAACAGCATGCACAGTACGTATCTTGAATTACAGGAAGGATAAAAGTTCATTTTGGAATCTCCTTCACATATCACCCATTCGTAATGCTTCTGGAAAGATTGCATACTTTGTGGGTGTTCAGATGGAAGAAGGGTGTAAGAACCAGGTCGGACATGGGCTAAGCCCTGAGATGAGGCAGCTTAGCGCTGTTGGTGCAGTCAGAATTGCAGTGAGGAGCTTATCAATGGGTGCTGGCCCTTCCAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

400

Amino Acids

44.02

Weight (kDa)

8.91

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_9	PF13426	28 - 131	7.6e-17	PAS domain
PAS_9	PF13426	259 - 357	5.1e-18	PAS domain
PAS	PF00989	271 - 357	3.3e-07	PAS fold
PAS_3	PF08447	271 - 356	1.9e-06	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	43, 229, 415, 899
AclWI	GGATC	1 cut(s)	782
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	1 cut(s)	966
AfeI	AGCGCT	1 cut(s)	1135
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	587, 838, 944, 976
AjnI	CCWGG	1 cut(s)	1092
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	7 cut(s)	13, 90, 272, 626, 711, 1129, 1167
AluI	AGCT	7 cut(s)	13, 90, 272, 626, 711, 1129, 1167
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	896
AlwI	GGATC	1 cut(s)	782
Aor51HI	AGCGCT	1 cut(s)	1135
AoxI	GGCC	4 cut(s)	252, 407, 724, 1183
ApeKI	GCWGC	3 cut(s)	626, 708, 1126
AseI	ATTAAT	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	2 cut(s)	876, 1136
AspS9I	GGNCC	4 cut(s)	212, 244, 724, 1184
AsuC2I	CCSGG	3 cut(s)	118, 216, 248
AsuHPI	GGTGA	2 cut(s)	379, 1014
AsuII	TTCGAA	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	212, 244
BbsI	GAAGAC	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	613, 720, 1138
BccI	CCATC	3 cut(s)	263, 299, 1066
BceAI	ACGGC	2 cut(s)	211, 298
BciT130I	CCWGG	1 cut(s)	1094
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	3 cut(s)	118, 216, 248
BcoDI	GTCTC	1 cut(s)	896
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	667
BfoI	RGCGCY	1 cut(s)	1137
BisI	GCNGC	4 cut(s)	43, 627, 709, 1127
BlpI	GCTNAGC	2 cut(s)	1109, 1130
BlsI	GCNGC	4 cut(s)	44, 628, 710, 1128
Bme1390I	CCNGG	4 cut(s)	118, 216, 248, 1094
Bme18I	GGWCC	2 cut(s)	212, 244
BmgT120I	GGNCC	4 cut(s)	212, 244, 724, 1184
BmiI	GGNNCC	3 cut(s)	149, 213, 393
BmrFI	CCNGG	4 cut(s)	118, 216, 248, 1094
BmsI	GCATC	5 cut(s)	130, 312, 550, 695, 817
BpiI	GAAGAC	1 cut(s)	623
Bpu1102I	GCTNAGC	2 cut(s)	1109, 1130
Bpu14I	TTCGAA	1 cut(s)	170
BpuMI	CCSGG	3 cut(s)	118, 216, 248
BsaAI	YACGTR	1 cut(s)	968
BsaHI	GRCGYC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	896
BsaJI	CCNNGG	2 cut(s)	215, 410
BsaXI	ACNNNNNCTCC	4 cut(s)	375, 405, 418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	1094
BseDI	CCNNGG	2 cut(s)	215, 410
BseGI	GGATG	4 cut(s)	121, 327, 468, 562
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	3 cut(s)	62, 745, 1107
BseRI	GAGGAG	4 cut(s)	278, 418, 464, 1177
BseXI	GCAGC	3 cut(s)	613, 720, 1138
BseYI	CCCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	1164
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	4 cut(s)	254, 409, 726, 1185
BsiEI	CGRYCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	117, 215, 247
BslFI	GGGAC	2 cut(s)	232, 322
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	896
BsmFI	GGGAC	2 cut(s)	232, 322
BsnI	GGCC	4 cut(s)	254, 409, 726, 1185
Bso31I	GGTCTC	1 cut(s)	896
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	36, 96, 787
Bsp1720I	GCTNAGC	2 cut(s)	1109, 1130
BspACI	CCGC	4 cut(s)	43, 229, 415, 899
BspANI	GGCC	4 cut(s)	254, 409, 726, 1185
BspCNI	CTCAG	3 cut(s)	63, 744, 1108
BspLI	GGNNCC	3 cut(s)	149, 213, 393
BspPI	GGATC	1 cut(s)	782
BspT104I	TTCGAA	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	896
BssECI	CCNNGG	2 cut(s)	215, 410
BssMI	GATC	3 cut(s)	36, 96, 787
BssNI	GRCGYC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	1094
Bst4CI	ACNGT	2 cut(s)	30, 964
Bst6I	CTCTTC	1 cut(s)	695
BstACI	GRCGYC	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstBAI	YACGTR	1 cut(s)	968
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	227, 958, 1183
BstDEI	CTNAG	5 cut(s)	71, 731, 1109, 1116, 1130
BstF5I	GGATG	4 cut(s)	121, 327, 468, 562
BstH2I	RGCGCY	1 cut(s)	1137
BstHHI	GCGC	2 cut(s)	876, 1136
BstKTI	GATC	3 cut(s)	39, 99, 790
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	3 cut(s)	36, 96, 787
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	3 cut(s)	632, 827, 1142
BstNI	CCWGG	1 cut(s)	1094
BstNSI	RCATGY	2 cut(s)	808, 960
BstSCI	CCNGG	4 cut(s)	116, 214, 246, 1092
BstSFI	CTRYAG	1 cut(s)	667
BstSNI	TACGTA	1 cut(s)	968
BstV1I	GCAGC	3 cut(s)	613, 720, 1138
BstV2I	GAAGAC	1 cut(s)	623
BsuRI	GGCC	4 cut(s)	254, 409, 726, 1185
BtsCI	GGATG	4 cut(s)	121, 327, 468, 562
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	2 cut(s)	99, 1164
Cac8I	GCNNGC	3 cut(s)	227, 958, 1183
CfoI	GCGC	2 cut(s)	876, 1136
Cfr13I	GGNCC	4 cut(s)	212, 244, 724, 1184
CseI	GACGC	2 cut(s)	319, 515
CsiI	ACCWGGT	1 cut(s)	1092
Csp6I	GTAC	1 cut(s)	965
CviAII	CATG	5 cut(s)	238, 805, 860, 957, 1103
CviQI	GTAC	1 cut(s)	965
DdeI	CTNAG	5 cut(s)	71, 731, 1109, 1116, 1130
DpnI	GATC	3 cut(s)	38, 98, 789
DpnII	GATC	3 cut(s)	36, 96, 787
Eam1104I	CTCTTC	1 cut(s)	695
EarI	CTCTTC	1 cut(s)	695
EciI	GGCGGA	1 cut(s)	914
Eco105I	TACGTA	1 cut(s)	968
Eco130I	CCWWGG	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	896
Eco47I	GGWCC	2 cut(s)	212, 244
Eco47III	AGCGCT	1 cut(s)	1135
EcoRII	CCWGG	1 cut(s)	1092
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	5 cut(s)	241, 808, 863, 960, 1106
FaqI	GGGAC	2 cut(s)	232, 322
FatI	CATG	5 cut(s)	237, 804, 859, 956, 1102
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	43, 627, 709, 1127
FokI	GGATG	4 cut(s)	108, 334, 475, 569
Fsp4HI	GCNGC	4 cut(s)	43, 627, 709, 1127
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	2 cut(s)	875, 1135
GluI	GCNGC	4 cut(s)	43, 627, 709, 1127
GsaI	CCCAGC	1 cut(s)	17
HaeII	RGCGCY	1 cut(s)	1137
HaeIII	GGCC	4 cut(s)	254, 409, 726, 1185
HapII	CCGG	3 cut(s)	117, 215, 247
HgaI	GACGC	2 cut(s)	319, 515
HhaI	GCGC	2 cut(s)	876, 1136
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	5 cut(s)	241, 808, 863, 960, 1106
Hin6I	GCGC	2 cut(s)	874, 1134
HinP1I	GCGC	2 cut(s)	874, 1134
HinfI	GANTC	9 cut(s)	5, 370, 509, 545, 590, 674, 762, 908, 1006
HpaII	CCGG	3 cut(s)	117, 215, 247
HphI	GGTGA	2 cut(s)	379, 1014
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	9 cut(s)	10, 72, 300, 396, 792, 927, 1071, 1100, 1151
Hpy188III	TCNNGA	7 cut(s)	94, 151, 162, 187, 973, 1041, 1197
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	531
HpyAV	CCTTC	8 cut(s)	117, 346, 737, 841, 979, 1022, 1073, 1197
HpyCH4III	ACNGT	2 cut(s)	30, 964
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	9 cut(s)	225, 551, 629, 708, 821, 960, 1052, 1145, 1157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	632, 827, 1142
HpyF3I	CTNAG	5 cut(s)	71, 731, 1109, 1116, 1130
HpySE526I	ACGT	1 cut(s)	967
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	5 cut(s)	241, 808, 863, 960, 1106
HspAI	GCGC	2 cut(s)	874, 1134
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	36, 96, 787
LmnI	GCTCC	2 cut(s)	10, 1164
Lsp1109I	GCAGC	3 cut(s)	613, 720, 1138
LweI	GCATC	5 cut(s)	130, 312, 550, 695, 817
MabI	ACCWGGT	1 cut(s)	1092
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	967
MalI	GATC	3 cut(s)	38, 98, 789
MboI	GATC	3 cut(s)	36, 96, 787
MboII	GAAGA	6 cut(s)	184, 599, 628, 712, 826, 1088
MfeI	CAATTG	1 cut(s)	877
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	5 cut(s)	77, 292, 877, 976, 1152
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	2 cut(s)	522, 1078
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	5 cut(s)	20, 639, 743, 782, 890
MspI	CCGG	3 cut(s)	117, 215, 247
MspR9I	CCNGG	4 cut(s)	118, 216, 248, 1094
MunI	CAATTG	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	1094
MwoI	GCNNNNNNNGC	3 cut(s)	632, 827, 1142
NciI	CCSGG	3 cut(s)	118, 216, 248
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	3 cut(s)	36, 96, 787
NlaIII	CATG	5 cut(s)	241, 808, 863, 960, 1106
NlaIV	GGNNCC	3 cut(s)	149, 213, 393
NspI	RCATGY	2 cut(s)	808, 960
NspV	TTCGAA	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	960
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	8 cut(s)	5, 370, 509, 545, 590, 762, 908, 1006
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	44, 628, 710, 1128
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Ppu21I	YACGTR	1 cut(s)	968
PshBI	ATTAAT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	1092
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	1092
PspN4I	GGNNCC	3 cut(s)	149, 213, 393
PspPI	GGNCC	4 cut(s)	212, 244, 724, 1184
RsaI	GTAC	1 cut(s)	966
RsaNI	GTAC	1 cut(s)	965
SaqAI	TTAA	5 cut(s)	20, 639, 743, 782, 890
SatI	GCNGC	4 cut(s)	43, 627, 709, 1127
Sau3AI	GATC	3 cut(s)	36, 96, 787
Sau96I	GGNCC	4 cut(s)	212, 244, 724, 1184
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	4 cut(s)	118, 216, 248, 1094
SduI	GDGCHC	1 cut(s)	63
SexAI	ACCWGGT	1 cut(s)	1092
SfaNI	GCATC	5 cut(s)	130, 312, 550, 695, 817
SfcI	CTRYAG	1 cut(s)	667
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	2 cut(s)	212, 244
SnaBI	TACGTA	1 cut(s)	968
SphI	GCATGC	1 cut(s)	960
Sse9I	AATT	5 cut(s)	77, 292, 877, 976, 1152
SsiI	CCGC	4 cut(s)	43, 229, 415, 899
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	4 cut(s)	116, 214, 246, 1092
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	30, 964
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	6 cut(s)	24, 63, 110, 170, 401, 490
TaqII	GACCGA	2 cut(s)	223, 920
TasI	AATT	5 cut(s)	77, 292, 877, 976, 1152
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	8 cut(s)	5, 370, 509, 545, 590, 762, 908, 1006
Tru1I	TTAA	5 cut(s)	20, 639, 743, 782, 890
Tru9I	TTAA	5 cut(s)	20, 639, 743, 782, 890
TscAI	CASTG	2 cut(s)	106, 1164
TseI	GCWGC	3 cut(s)	626, 708, 1126
TspDTI	ATGAA	4 cut(s)	320, 362, 876, 987
TspGWI	ACGGA	1 cut(s)	643
TspRI	CASTG	2 cut(s)	106, 1164
VpaK11BI	GGWCC	2 cut(s)	212, 244
VspI	ATTAAT	1 cut(s)	639
XceI	RCATGY	2 cut(s)	808, 960
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1100
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.