Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Forward (+)

5536037 .. 5539337

Gene Structure 3301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1078900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAATCGGAGCTGGGTTTAATCGAGCAGTCGTTCATCAGCCGCTACTCGCTCTGGGTCCAGGAAGCTCTGGGGGAACTGCCCGATAGCTTCACGATCACTGACCCTTGGATTTCCGGGCACCCAATCGTGTTCGCGAGCAAAGAGTTCCTGAAAATGTCGGGATATTCGAAGAACGAGGTGGTCGGGAGGAACGGCAGAGTGTTTCAGGGTCCGGGGACTTGCAGGCGGTCGGTCATGGAGGTCCGGGAGGCCATCAGGGAGGAGCGAGCCGTCCAGATTAATTTGCTGAATTATCGGAAAGACGGGACGCCCTTTTGGATGCTGTTTCATATGTGTCCTGTTTTTGGGAAGGAGGATGGGAGGGTGATTCATTTCGTGGGAGTTCAGGTTCCGATTTCGAGGAAGCCGAGGCGGTCTGGTGGGAGAAATGGGGTTGGTTTGTGTGAGGAGGGGTCTAGGATGAGTGAGATTGTTTACGGATCGTGTCGAAAAGAGGTGTGCTTTGATTCTTTGGTTGATTTGGGTCGTGTTTTGTCATTGGAATCTGCATTGGACGATGCTGATAGCAGAGGATTCAACATTGAAGAATCGTGTGAGGCAAGTGATGTAGAGAAGACGAGAGCTGCAACTGCTATTAATAACATCTTGTCCGTGCTAACGCACTATAGCGAGTTAACGGGCAGATTAGTTTGTGGGAAGAGATGCAACTTATGTGGGGTGGGACTTCTCAGTTCAGCCTTAAATATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTGATTCACACTTACCGGATATGCCTATAGTTTATGCAAGTGATGCCTTCTTCAAATTGACAGGTTATGCCAGACATGAAGTCTTGGGGCGCAATTGTAGATTTTTGAGTGGGACGGATACAGACCCCTCAATGATATATCGGATAAAGGAAAGCATTCAAAACGAAACAGCATGCACAGTACGTATCTTGAATTACAGGAAGGATAAAAATTCATTTTGGAATCTCCTTCACATATCACCTATTCGTAATGCTTCTGGCAAGATTGCGTACTTTGTGGGTGTTCAGATGGAAGAAGGGTGTAAGAACCAGGTCGAACATGGGCTAAGCCCCGAGATGAGGCAGCTTAGCACTGTTGGTGCAGTCAGAATTGCAGTGCGGAGCTTAACAATGGGTGCCGGCGCTTCCAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

400

Amino Acids

44.36

Weight (kDa)

8.4

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_9	PF13426	40 - 131	4.3e-16	PAS domain
PAS	PF00989	43 - 129	3.7e-06	PAS fold
PAS_9	PF13426	267 - 357	1.1e-17	PAS domain
PAS	PF00989	271 - 357	2.3e-07	PAS fold
PAS_3	PF08447	271 - 356	7e-06	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	120, 1178
AccII	CGCG	1 cut(s)	137
AciI	CCGC	4 cut(s)	43, 229, 415, 1162
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	994
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	2 cut(s)	966, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	347, 1122
AgsI	TTSAA	5 cut(s)	580, 587, 838, 944, 976
AhdI	GACNNNNNGTC	1 cut(s)	863
AjnI	CCWGG	2 cut(s)	60, 1092
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	7 cut(s)	13, 68, 90, 626, 774, 1129, 1167
AluI	AGCT	7 cut(s)	13, 68, 90, 626, 774, 1129, 1167
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	1115
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	626, 1126
ApoI	RAATTY	1 cut(s)	994
AseI	ATTAAT	2 cut(s)	282, 639
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	2 cut(s)	876, 1187
AspS9I	GGNCC	3 cut(s)	58, 212, 244
AsuC2I	CCSGG	3 cut(s)	118, 216, 248
AsuHPI	GGTGA	2 cut(s)	379, 1014
AsuII	TTCGAA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	1115
AvaII	GGWCC	3 cut(s)	58, 212, 244
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	2 cut(s)	120, 1178
BbsI	GAAGAC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	613, 1138
BccI	CCATC	3 cut(s)	263, 353, 1066
BceAI	ACGGC	2 cut(s)	211, 257
BciT130I	CCWGG	2 cut(s)	62, 1094
BciVI	GTATCC	1 cut(s)	895
BcnI	CCSGG	3 cut(s)	118, 216, 248
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	2 cut(s)	667, 810
BfoI	RGCGCY	1 cut(s)	1188
BfuI	GTATCC	1 cut(s)	895
BisI	GCNGC	3 cut(s)	43, 627, 1127
BlpI	GCTNAGC	2 cut(s)	1109, 1130
BlsI	GCNGC	3 cut(s)	44, 628, 1128
Bme1390I	CCNGG	5 cut(s)	62, 118, 216, 248, 1094
Bme18I	GGWCC	3 cut(s)	58, 212, 244
BmeRI	GACNNNNNGTC	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	1115
BmgT120I	GGNCC	3 cut(s)	58, 212, 244
BmiI	GGNNCC	5 cut(s)	59, 122, 213, 393, 1180
BmrFI	CCNGG	5 cut(s)	62, 118, 216, 248, 1094
BmsI	GCATC	4 cut(s)	312, 550, 695, 817
BpiI	GAAGAC	1 cut(s)	623
Bpu1102I	GCTNAGC	2 cut(s)	1109, 1130
Bpu14I	TTCGAA	1 cut(s)	170
BpuMI	CCSGG	3 cut(s)	118, 216, 248
BsaAI	YACGTR	1 cut(s)	968
BsaHI	GRCGYC	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	107, 215, 410
BsaWI	WCCGGW	1 cut(s)	799
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 1122
Bse118I	RCCGGY	1 cut(s)	1181
BseBI	CCWGG	2 cut(s)	62, 1094
BseDI	CCNNGG	3 cut(s)	107, 215, 410
BseGI	GGATG	3 cut(s)	327, 364, 468
BseLI	CCNNNNNNNGG	2 cut(s)	347, 1122
BseMII	CTCAG	1 cut(s)	745
BseRI	GAGGAG	2 cut(s)	278, 464
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	613, 1138
BseYI	CCCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	1164
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	2 cut(s)	120, 1178
BsiEI	CGRYCG	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	1115
BsiSI	CCGG	5 cut(s)	117, 215, 247, 800, 1182
BslFI	GGGAC	4 cut(s)	232, 322, 738, 910
BslI	CCNNNNNNNGG	2 cut(s)	347, 1122
BsmFI	GGGAC	4 cut(s)	232, 322, 738, 910
BsmI	GAATGC	1 cut(s)	939
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	1115
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	96, 482
Bsp1720I	GCTNAGC	2 cut(s)	1109, 1130
Bsp68I	TCGCGA	1 cut(s)	137
BspACI	CCGC	4 cut(s)	43, 229, 415, 1162
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	744
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	5 cut(s)	59, 122, 213, 393, 1180
BspPI	GGATC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	170
BspT107I	GGYRCC	2 cut(s)	120, 1178
BsrFI	RCCGGY	1 cut(s)	1181
BssAI	RCCGGY	1 cut(s)	1181
BssECI	CCNNGG	3 cut(s)	107, 215, 410
BssMI	GATC	2 cut(s)	96, 482
BssNI	GRCGYC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	62, 1094
Bst4CI	ACNGT	2 cut(s)	964, 1138
Bst6I	CTCTTC	1 cut(s)	695
BstACI	GRCGYC	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstBAI	YACGTR	1 cut(s)	968
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	5 cut(s)	139, 227, 270, 958, 1183
BstDEI	CTNAG	3 cut(s)	731, 1109, 1130
BstF5I	GGATG	3 cut(s)	327, 364, 468
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	1188
BstHHI	GCGC	2 cut(s)	876, 1187
BstKTI	GATC	2 cut(s)	99, 485
BstMBI	GATC	2 cut(s)	96, 482
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	632, 827
BstNI	CCWGG	2 cut(s)	62, 1094
BstNSI	RCATGY	1 cut(s)	960
BstSCI	CCNGG	5 cut(s)	60, 116, 214, 246, 1092
BstSFI	CTRYAG	2 cut(s)	667, 810
BstSLI	GKGCMC	1 cut(s)	123
BstSNI	TACGTA	1 cut(s)	968
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	613, 1138
BstV2I	GAAGAC	1 cut(s)	623
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	327, 364, 468
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	3 cut(s)	99, 1134, 1164
BtuMI	TCGCGA	1 cut(s)	137
Cac8I	GCNNGC	5 cut(s)	139, 227, 270, 958, 1183
CfoI	GCGC	2 cut(s)	876, 1187
Cfr10I	RCCGGY	1 cut(s)	1181
Cfr13I	GGNCC	3 cut(s)	58, 212, 244
CseI	GACGC	1 cut(s)	319
CsiI	ACCWGGT	1 cut(s)	1092
Csp6I	GTAC	2 cut(s)	965, 1054
CspCI	CAANNNNNGTGG	2 cut(s)	697, 732
CviAII	CATG	4 cut(s)	238, 860, 957, 1103
CviQI	GTAC	2 cut(s)	965, 1054
DdeI	CTNAG	3 cut(s)	731, 1109, 1130
DpnI	GATC	2 cut(s)	98, 484
DpnII	GATC	2 cut(s)	96, 482
DriI	GACNNNNNGTC	1 cut(s)	863
Eam1104I	CTCTTC	1 cut(s)	695
Eam1105I	GACNNNNNGTC	1 cut(s)	863
EarI	CTCTTC	1 cut(s)	695
Eco105I	TACGTA	1 cut(s)	968
Eco130I	CCWWGG	1 cut(s)	107
Eco47I	GGWCC	3 cut(s)	58, 212, 244
Eco88I	CYCGRG	1 cut(s)	1115
EcoRII	CCWGG	2 cut(s)	60, 1092
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	4 cut(s)	241, 863, 960, 1106
FaqI	GGGAC	4 cut(s)	232, 322, 738, 910
FatI	CATG	4 cut(s)	237, 859, 956, 1102
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	43, 627, 1127
FokI	GGATG	3 cut(s)	334, 371, 475
Fsp4HI	GCNGC	3 cut(s)	43, 627, 1127
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	2 cut(s)	875, 1186
GluI	GCNGC	3 cut(s)	43, 627, 1127
GsaI	CCCAGC	1 cut(s)	17
HaeII	RGCGCY	1 cut(s)	1188
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	5 cut(s)	117, 215, 247, 800, 1182
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	2 cut(s)	876, 1187
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	241, 863, 960, 1106
Hin6I	GCGC	2 cut(s)	874, 1185
HinP1I	GCGC	2 cut(s)	874, 1185
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	772
HinfI	GANTC	9 cut(s)	5, 370, 509, 545, 576, 590, 762, 788, 1006
HpaI	GTTAAC	1 cut(s)	678
HpaII	CCGG	5 cut(s)	117, 215, 247, 800, 1182
HphI	GGTGA	2 cut(s)	379, 1014
Hpy166II	GTNNAC	2 cut(s)	478, 678
Hpy188I	TCNGA	6 cut(s)	10, 300, 396, 927, 1071, 1151
Hpy188III	TCNNGA	7 cut(s)	94, 136, 151, 162, 187, 277, 973
Hpy8I	GTNNAC	2 cut(s)	478, 678
HpyAV	CCTTC	5 cut(s)	346, 841, 979, 1022, 1073
HpyCH4III	ACNGT	2 cut(s)	964, 1138
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	8 cut(s)	225, 551, 629, 708, 821, 960, 1145, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	632, 827
HpyF3I	CTNAG	3 cut(s)	731, 1109, 1130
HpySE526I	ACGT	1 cut(s)	967
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	241, 863, 960, 1106
HspAI	GCGC	2 cut(s)	874, 1185
KroI	GCCGGC	1 cut(s)	1181
KroNI	GCCGGC	1 cut(s)	1183
KspAI	GTTAAC	1 cut(s)	678
Kzo9I	GATC	2 cut(s)	96, 482
LmnI	GCTCC	3 cut(s)	10, 265, 1164
Lsp1109I	GCAGC	2 cut(s)	613, 1138
LweI	GCATC	4 cut(s)	312, 550, 695, 817
MabI	ACCWGGT	1 cut(s)	1092
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	967
MalI	GATC	2 cut(s)	98, 484
MboI	GATC	2 cut(s)	96, 482
MboII	GAAGA	6 cut(s)	184, 599, 628, 712, 826, 1088
MfeI	CAATTG	1 cut(s)	877
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	7 cut(s)	283, 292, 839, 877, 976, 994, 1152
MroNI	GCCGGC	1 cut(s)	1181
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	8 cut(s)	20, 282, 639, 677, 743, 782, 1169, 1198
MspI	CCGG	5 cut(s)	117, 215, 247, 800, 1182
MspR9I	CCNGG	5 cut(s)	62, 118, 216, 248, 1094
MunI	CAATTG	1 cut(s)	877
Mva1269I	GAATGC	1 cut(s)	939
MvaI	CCWGG	2 cut(s)	62, 1094
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	632, 827
NaeI	GCCGGC	1 cut(s)	1183
NciI	CCSGG	3 cut(s)	118, 216, 248
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	2 cut(s)	96, 482
NgoMIV	GCCGGC	1 cut(s)	1181
NlaIII	CATG	4 cut(s)	241, 863, 960, 1106
NlaIV	GGNNCC	5 cut(s)	59, 122, 213, 393, 1180
NmeAIII	GCCGAG	1 cut(s)	435
NruI	TCGCGA	1 cut(s)	137
NspI	RCATGY	1 cut(s)	960
NspV	TTCGAA	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	960
PcsI	WCGNNNNNNNCGW	2 cut(s)	167, 407
PctI	GAATGC	1 cut(s)	939
PdiI	GCCGGC	1 cut(s)	1183
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	9 cut(s)	5, 370, 509, 545, 576, 590, 762, 788, 1006
PfoI	TCCNGGA	2 cut(s)	60, 246
PkrI	GCNGC	3 cut(s)	44, 628, 1128
Ppu21I	YACGTR	1 cut(s)	968
PshBI	ATTAAT	2 cut(s)	282, 639
Psp6I	CCWGG	2 cut(s)	60, 1092
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	2 cut(s)	60, 1092
PspN4I	GGNNCC	5 cut(s)	59, 122, 213, 393, 1180
PspPI	GGNCC	3 cut(s)	58, 212, 244
RruI	TCGCGA	1 cut(s)	137
RsaI	GTAC	2 cut(s)	966, 1055
RsaNI	GTAC	2 cut(s)	965, 1054
SaqAI	TTAA	8 cut(s)	20, 282, 639, 677, 743, 782, 1169, 1198
SatI	GCNGC	3 cut(s)	43, 627, 1127
Sau3AI	GATC	2 cut(s)	96, 482
Sau96I	GGNCC	3 cut(s)	58, 212, 244
ScrFI	CCNGG	5 cut(s)	62, 118, 216, 248, 1094
SduI	GDGCHC	1 cut(s)	123
SexAI	ACCWGGT	1 cut(s)	1092
SfaNI	GCATC	4 cut(s)	312, 550, 695, 817
SfcI	CTRYAG	2 cut(s)	667, 810
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	3 cut(s)	58, 212, 244
SnaBI	TACGTA	1 cut(s)	968
SphI	GCATGC	1 cut(s)	960
Sse9I	AATT	7 cut(s)	283, 292, 839, 877, 976, 994, 1152
SsiI	CCGC	4 cut(s)	43, 229, 415, 1162
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	5 cut(s)	60, 116, 214, 246, 1092
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	964, 1138
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	5 cut(s)	24, 170, 401, 490, 1098
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	7 cut(s)	283, 292, 839, 877, 976, 994, 1152
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	9 cut(s)	5, 370, 509, 545, 576, 590, 762, 788, 1006
Tru1I	TTAA	8 cut(s)	20, 282, 639, 677, 743, 782, 1169, 1198
Tru9I	TTAA	8 cut(s)	20, 282, 639, 677, 743, 782, 1169, 1198
TscAI	CASTG	3 cut(s)	106, 1141, 1164
TseI	GCWGC	2 cut(s)	626, 1126
TspDTI	ATGAA	5 cut(s)	25, 320, 362, 876, 987
TspGWI	ACGGA	3 cut(s)	495, 643, 914
TspRI	CASTG	3 cut(s)	106, 1141, 1164
VpaK11BI	GGWCC	3 cut(s)	58, 212, 244
VspI	ATTAAT	2 cut(s)	282, 639
XapI	RAATTY	1 cut(s)	994
XceI	RCATGY	1 cut(s)	960
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1100
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.