Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008018.1

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Forward (+)

32756 .. 35865

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008018.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ctgatcacttttcgtactgggctccctcaaagattgaagctttacggaaaaaggttgaagctttggaaggttgaggtgccacatgggattgggactgacgattttgaagaggagatggagtcggagttgggtttactagagcaatcgatcaacagtcgttactcgctttgcgtccaagaagctctgaacgaattgccggacagttttacggtgactgatccttatatttccggccaacccatcgtttttgcgagcaaagggttcctgaaaatgatggggtactcgaaaaccgaggtgattgggaggaatgggaggatatttcaagggccaggtacttgtagaaggtcggttatggaaataagggaggccattagagaagagagaggtattcagattaatttggtgaattataggagggatgggacacccttctggatgctctttcatatgttccctgtgtttagcaaagaggatgggagggtgattcattttgtgggagttcaagttcccattttgcgaaaaccgaggaggaggaatggggttggtttggtgtatgaggaggagagtagggtgaatgagagtgtttatgggtcttgtagaagagaagtgtgctctgattctttggtggatttgggcagtgctttgtctcttgagtgtgcactggatgatgctgataatagaggactggagattgaagagacgtgtgaggcaagtgaattagagaagcaaagagctgcgtcttccatgaataacatcttgtctgtgctaacacattatagcgagttaacaggcagactggtgtgtggaaagagatgcaacttaactggggtgggccttctcagttcatccttaaatatttctcttggtagaatcaaacaaagctttgtattaacagatccgcacttacctgacatgcctatagtttacgcaagtgaggccttcttcaaattgacaggttatgccagacacgaagtcatgggacgcaattgtagatttctaagtggcgaggatacggattcctcagcgacatatcggataaaggaaagcgttcagaatgaaaaagcatgcacagtacgtatcttgaattacaggaaggataagagttcattttggaatcttcttcatgtatcaccaattcgtaatgcttctggcaagattgcgtactttgtgggtgttcagatggaagaagcctgtaagaaccaggatgggcatgggctaagccctgagatgaggcagcttagcgccgttggagccgtcagggttgcagtgaggagtttatcaatgggtgccggcacatccgagtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

435

Amino Acids

48.72

Weight (kDa)

7.65

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 1286
AciI	CCGC	1 cut(s)	899
AclWI	GGATC	2 cut(s)	212, 890
AcoI	YGGCCR	1 cut(s)	232
AfaI	GTAC	5 cut(s)	16, 281, 334, 1074, 1163
AflIII	ACRYGT	1 cut(s)	701
AgsI	TTSAA	8 cut(s)	37, 58, 107, 323, 503, 695, 946, 1084
AhdI	GACNNNNNGTC	1 cut(s)	971
AjiI	CACGTC	1 cut(s)	702
AjnI	CCWGG	2 cut(s)	328, 1200
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	6 cut(s)	40, 61, 182, 734, 882, 1237
AluI	AGCT	6 cut(s)	40, 61, 182, 734, 882, 1237
Alw21I	GWGCWC	2 cut(s)	614, 661
Alw26I	GTCTC	2 cut(s)	651, 692
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	212, 890
AoxI	GGCC	5 cut(s)	232, 326, 366, 832, 936
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	734, 1234
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	1047
AspLEI	GCGC	1 cut(s)	1244
AspS9I	GGNCC	2 cut(s)	326, 832
AsuHPI	GGTGA	6 cut(s)	223, 307, 415, 493, 583, 1122
BaeGI	GKGCMC	1 cut(s)	661
BanI	GGYRCC	2 cut(s)	76, 1286
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	614, 661
BbvCI	CCTCAGC	1 cut(s)	1021
BbvI	GCAGC	2 cut(s)	721, 1246
BccI	CCATC	7 cut(s)	109, 248, 268, 413, 467, 1174, 1199
BceAI	ACGGC	2 cut(s)	1229, 1238
BciT130I	CCWGG	2 cut(s)	330, 1202
BciVI	GTATCC	1 cut(s)	1003
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	651, 692
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	918
BfoI	RGCGCY	1 cut(s)	1245
BfuI	GTATCC	1 cut(s)	1003
BisI	GCNGC	2 cut(s)	735, 1235
BlpI	GCTNAGC	2 cut(s)	1217, 1238
BlsI	GCNGC	2 cut(s)	736, 1236
Bme1390I	CCNGG	2 cut(s)	330, 1202
BmeRI	GACNNNNNGTC	1 cut(s)	971
BmgBI	CACGTC	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	326, 832
BmiI	GGNNCC	5 cut(s)	23, 78, 263, 1252, 1288
BmrFI	CCNGG	2 cut(s)	330, 1202
BmrI	ACTGGG	2 cut(s)	27, 834
BmsI	GCATC	3 cut(s)	426, 658, 803
BmuI	ACTGGG	2 cut(s)	27, 834
BpiI	GAAGAC	1 cut(s)	732
BpmI	CTGGAG	1 cut(s)	707
Bpu10I	CCTNAGC	1 cut(s)	1021
Bpu1102I	GCTNAGC	2 cut(s)	1217, 1238
BpuEI	CTTGAG	1 cut(s)	671
Bsa29I	ATCGAT	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	1076
BsaJI	CCNNGG	2 cut(s)	291, 524
BsaXI	ACNNNNNCTCC	6 cut(s)	104, 110, 134, 140, 489, 519
Bse118I	RCCGGY	1 cut(s)	1289
Bse1I	ACTGG	5 cut(s)	22, 666, 690, 801, 829
BseBI	CCWGG	2 cut(s)	330, 1202
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	291, 524
BseGI	GGATG	7 cut(s)	424, 441, 478, 670, 845, 1210, 1295
BseMII	CTCAG	3 cut(s)	853, 1035, 1215
BseNI	ACTGG	5 cut(s)	22, 666, 690, 801, 829
BseRI	GAGGAG	6 cut(s)	125, 541, 544, 572, 575, 1285
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	721, 1246
BshFI	GGCC	5 cut(s)	234, 328, 368, 834, 938
BshNI	GGYRCC	2 cut(s)	76, 1286
BshVI	ATCGAT	1 cut(s)	146
BsiHKAI	GWGCWC	2 cut(s)	614, 661
BsiSI	CCGG	3 cut(s)	197, 231, 1290
BslFI	GGGAC	3 cut(s)	106, 436, 993
BsmAI	GTCTC	2 cut(s)	651, 692
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	3 cut(s)	106, 436, 993
BsnI	GGCC	5 cut(s)	234, 328, 368, 834, 938
Bsp1286I	GDGCHC	3 cut(s)	24, 614, 661
Bsp143I	GATC	4 cut(s)	3, 147, 217, 895
Bsp1720I	GCTNAGC	2 cut(s)	1217, 1238
BspACI	CCGC	1 cut(s)	899
BspANI	GGCC	5 cut(s)	234, 328, 368, 834, 938
BspCNI	CTCAG	3 cut(s)	852, 1034, 1216
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	5 cut(s)	23, 78, 263, 1252, 1288
BspPI	GGATC	2 cut(s)	212, 890
BspT107I	GGYRCC	2 cut(s)	76, 1286
BsrFI	RCCGGY	1 cut(s)	1289
BsrI	ACTGG	5 cut(s)	22, 666, 690, 801, 829
BssAI	RCCGGY	1 cut(s)	1289
BssECI	CCNNGG	2 cut(s)	291, 524
BssMI	GATC	4 cut(s)	3, 147, 217, 895
Bst2UI	CCWGG	2 cut(s)	330, 1202
Bst4CI	ACNGT	4 cut(s)	155, 203, 211, 1072
Bst6I	CTCTTC	4 cut(s)	102, 372, 595, 690
BstBAI	YACGTR	1 cut(s)	1076
BstC8I	GCNNGC	3 cut(s)	253, 1066, 1291
BstDEI	CTNAG	6 cut(s)	839, 998, 1021, 1217, 1224, 1238
BstF5I	GGATG	7 cut(s)	424, 441, 478, 670, 845, 1210, 1295
BstH2I	RGCGCY	1 cut(s)	1245
BstHHI	GCGC	1 cut(s)	1244
BstKTI	GATC	4 cut(s)	6, 150, 220, 898
BstMAI	GTCTC	2 cut(s)	651, 692
BstMBI	GATC	4 cut(s)	3, 147, 217, 895
BstMWI	GCNNNNNNNGC	2 cut(s)	935, 1250
BstNI	CCWGG	2 cut(s)	330, 1202
BstNSI	RCATGY	2 cut(s)	916, 1068
BstSCI	CCNGG	2 cut(s)	328, 1200
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	661
BstSNI	TACGTA	1 cut(s)	1076
BstV1I	GCAGC	2 cut(s)	721, 1246
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
Bsu15I	ATCGAT	1 cut(s)	146
BsuI	GTATCC	1 cut(s)	1003
BsuRI	GGCC	5 cut(s)	234, 328, 368, 834, 938
BsuTUI	ATCGAT	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	702
BtsCI	GGATG	7 cut(s)	424, 441, 478, 670, 845, 1210, 1295
BtsI	GCAGTG	2 cut(s)	643, 1272
BtsIMutI	CAGTG	3 cut(s)	643, 659, 1272
Cac8I	GCNNGC	3 cut(s)	253, 1066, 1291
CfoI	GCGC	1 cut(s)	1244
Cfr10I	RCCGGY	1 cut(s)	1289
Cfr13I	GGNCC	2 cut(s)	326, 832
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	3 cut(s)	160, 726, 990
Csp6I	GTAC	5 cut(s)	15, 280, 333, 1073, 1162
CviAII	CATG	7 cut(s)	83, 745, 913, 976, 1065, 1124, 1211
CviQI	GTAC	5 cut(s)	15, 280, 333, 1073, 1162
DdeI	CTNAG	6 cut(s)	839, 998, 1021, 1217, 1224, 1238
DpnI	GATC	4 cut(s)	5, 149, 219, 897
DpnII	GATC	4 cut(s)	3, 147, 217, 895
DriI	GACNNNNNGTC	1 cut(s)	971
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	4 cut(s)	102, 372, 595, 690
Eam1105I	GACNNNNNGTC	1 cut(s)	971
EarI	CTCTTC	4 cut(s)	102, 372, 595, 690
Eco105I	TACGTA	1 cut(s)	1076
Eco147I	AGGCCT	1 cut(s)	938
Eco24I	GRGCYC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	328, 1200
EcoT38I	GRGCYC	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	7 cut(s)	86, 748, 916, 979, 1068, 1127, 1214
FaqI	GGGAC	3 cut(s)	106, 436, 993
FatI	CATG	7 cut(s)	82, 744, 912, 975, 1064, 1123, 1210
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	735, 1235
FokI	GGATG	7 cut(s)	431, 448, 485, 677, 832, 1217, 1282
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	735, 1235
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	1243
GluI	GCNGC	2 cut(s)	735, 1235
GsuI	CTGGAG	1 cut(s)	707
HaeII	RGCGCY	1 cut(s)	1245
HaeIII	GGCC	5 cut(s)	234, 328, 368, 834, 938
HapII	CCGG	3 cut(s)	197, 231, 1290
HgaI	GACGC	3 cut(s)	160, 726, 990
HhaI	GCGC	1 cut(s)	1244
Hin1II	CATG	7 cut(s)	86, 748, 916, 979, 1068, 1127, 1214
Hin6I	GCGC	1 cut(s)	1242
HinP1I	GCGC	1 cut(s)	1242
HincII	GTYRAC	1 cut(s)	786
HindII	GTYRAC	1 cut(s)	786
HindIII	AAGCTT	3 cut(s)	38, 59, 880
HinfI	GANTC	7 cut(s)	119, 484, 617, 870, 1016, 1114, 1301
HpaI	GTTAAC	1 cut(s)	786
HpaII	CCGG	3 cut(s)	197, 231, 1290
HphI	GGTGA	6 cut(s)	223, 307, 415, 493, 583, 1122
Hpy166II	GTNNAC	4 cut(s)	134, 659, 786, 925
Hpy188I	TCNGA	8 cut(s)	124, 186, 393, 616, 1035, 1053, 1179, 1300
Hpy188III	TCNNGA	5 cut(s)	265, 433, 650, 1081, 1305
Hpy8I	GTNNAC	4 cut(s)	134, 659, 786, 925
HpyAV	CCTTC	6 cut(s)	61, 336, 439, 845, 949, 1087
HpyCH4III	ACNGT	4 cut(s)	155, 203, 211, 1072
HpyCH4IV	ACGT	2 cut(s)	701, 1075
HpyCH4V	TGCA	4 cut(s)	659, 816, 1068, 1265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	935, 1250
HpyF3I	CTNAG	6 cut(s)	839, 998, 1021, 1217, 1224, 1238
HpySE526I	ACGT	2 cut(s)	701, 1075
Hsp92II	CATG	7 cut(s)	86, 748, 916, 979, 1068, 1127, 1214
HspAI	GCGC	1 cut(s)	1242
KroI	GCCGGC	1 cut(s)	1289
KroNI	GCCGGC	1 cut(s)	1291
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	786
Kzo9I	GATC	4 cut(s)	3, 147, 217, 895
LmnI	GCTCC	2 cut(s)	27, 1250
Lsp1109I	GCAGC	2 cut(s)	721, 1246
LweI	GCATC	3 cut(s)	426, 658, 803
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	701, 1075
MaeIII	GTNAC	2 cut(s)	158, 211
MalI	GATC	4 cut(s)	5, 149, 219, 897
MboI	GATC	4 cut(s)	3, 147, 217, 895
MboII	GAAGA	9 cut(s)	119, 389, 612, 707, 732, 934, 1109, 1112, 1196
MfeI	CAATTG	1 cut(s)	985
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	3 cut(s)	24, 614, 661
MluCI	AATT	8 cut(s)	191, 397, 406, 716, 947, 985, 1084, 1134
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	102, 1228
MroNI	GCCGGC	1 cut(s)	1289
MroXI	GAANNNNTTC	1 cut(s)	1047
MseI	TTAA	5 cut(s)	396, 785, 821, 851, 890
MspI	CCGG	3 cut(s)	197, 231, 1290
MspR9I	CCNGG	2 cut(s)	330, 1202
MunI	CAATTG	1 cut(s)	985
MvaI	CCWGG	2 cut(s)	330, 1202
MwoI	GCNNNNNNNGC	2 cut(s)	935, 1250
NaeI	GCCGGC	1 cut(s)	1291
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	4 cut(s)	3, 147, 217, 895
NgoMIV	GCCGGC	1 cut(s)	1289
NlaIII	CATG	7 cut(s)	86, 748, 916, 979, 1068, 1127, 1214
NlaIV	GGNNCC	5 cut(s)	23, 78, 263, 1252, 1288
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	916, 1068
PaeI	GCATGC	1 cut(s)	1068
PceI	AGGCCT	1 cut(s)	938
PdiI	GCCGGC	1 cut(s)	1291
PdmI	GAANNNNTTC	1 cut(s)	1047
PfeI	GAWTC	5 cut(s)	484, 617, 870, 1016, 1114
PkrI	GCNGC	2 cut(s)	736, 1236
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	1076
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	328, 1200
PspGI	CCWGG	2 cut(s)	328, 1200
PspN4I	GGNNCC	5 cut(s)	23, 78, 263, 1252, 1288
PspPI	GGNCC	2 cut(s)	326, 832
PsuI	RGATCY	1 cut(s)	895
RsaI	GTAC	5 cut(s)	16, 281, 334, 1074, 1163
RsaNI	GTAC	5 cut(s)	15, 280, 333, 1073, 1162
SaqAI	TTAA	5 cut(s)	396, 785, 821, 851, 890
SatI	GCNGC	2 cut(s)	735, 1235
Sau3AI	GATC	4 cut(s)	3, 147, 217, 895
Sau96I	GGNCC	2 cut(s)	326, 832
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	330, 1202
SduI	GDGCHC	3 cut(s)	24, 614, 661
SfaNI	GCATC	3 cut(s)	426, 658, 803
SfcI	CTRYAG	1 cut(s)	918
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
SnaBI	TACGTA	1 cut(s)	1076
SphI	GCATGC	1 cut(s)	1068
Sse9I	AATT	8 cut(s)	191, 397, 406, 716, 947, 985, 1084, 1134
SseBI	AGGCCT	1 cut(s)	938
SsiI	CCGC	1 cut(s)	899
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	938
StyD4I	CCNGG	2 cut(s)	328, 1200
TaaI	ACNGT	4 cut(s)	155, 203, 211, 1072
TaiI	ACGT	2 cut(s)	704, 1078
TaqI	TCGA	2 cut(s)	146, 284
TasI	AATT	8 cut(s)	191, 397, 406, 716, 947, 985, 1084, 1134
TfiI	GAWTC	5 cut(s)	484, 617, 870, 1016, 1114
Tru1I	TTAA	5 cut(s)	396, 785, 821, 851, 890
Tru9I	TTAA	5 cut(s)	396, 785, 821, 851, 890
TscAI	CASTG	3 cut(s)	643, 666, 1272
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	734, 1234
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	7 cut(s)	434, 476, 761, 834, 1071, 1095, 1112
TspGWI	ACGGA	2 cut(s)	60, 1028
TspRI	CASTG	3 cut(s)	643, 666, 1272
VneI	GTGCAC	1 cut(s)	657
VspI	ATTAAT	1 cut(s)	396
XceI	RCATGY	2 cut(s)	916, 1068
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1208
XmnI	GAANNNNTTC	1 cut(s)	1047
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.