Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Forward (+)

50248496 .. 50251004

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0327400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCAAGCTTAAGAGCCCCGTCAAATTATTCTGAAGAACCACCTCGCCATCCAAGTCTCGTGGTAAATTCCCAGGAACCTTTCAATGCAGAGCCACCACGTTCGGCGTTGATAGCCTCTTATGTGACCCCAGTAGATTTGTTCTACAAGCGAAACCATGGACCAATTCCTGTGCTTGATGATATTGAAAGAGTTATAGATGAGAAATGGGAAAATTTATCGGTAGCCTCATATTTTAGTTACCTCCTATCTTCTCTGTGCGGCTGTTGTATCGAGTTACTATATGCGGTATTGCGGTTTGGTAGAAAAGCCTCTGGAATTGTCAATGGCAGACATCAGGAAGCTTTCGAAGCACACTGTGACAGCAACATTGCAACCATTTGGGGTGGGGCTAAACTTGCTGATGTTCTTGAACTTGTGGGAATCTCAAAGTCAACATCAGTATCATCACCCTTAGGGGGCAATCATGTTGAGTTTGTTAGTGTTGATATGTGCAAGGAGGAAAAAGGGGGGCCTTACAAGTCATCAATTCCATTACTTCAAGCCACAAATTTAGATGCAGAGGTTATCCTTGCATATGAAATGAATGGACAGCCTCTAAACAGGGATCATGGCTATCCTCTGCGTGTGATTGTTCCTGGTGTGATTGGTGCTCGATCTGTAAAATGGCTTAGTTCCATCAATATTATTGAAAATGAATGCCAGGGATTTTTTACGCAAAGGGACTATAAAATGTTTCCTCCTACAGTAAACTGGGAAAATATAGATTGGTCAACTAGAAGGCCTCAGATGGATTTTCCAGTTCAGTCTGTGATTTGTTCTCTGGAGGAAGAAAATACAGTAGAGCCTGGAAAGATTGTAGTTCATGGATATGCAGTGTCTGGAGGCGGTCGGGGGATTGAGCGAGTGGATGTATCTTTCGATGGAGGCAAGACATGGGAGGAAGCAATCAGATACCAGAAGAGTACTGAAGTCCCATATGTTGCTGATGATACAAGCAGCGGTGACAAGTGGGCATGGGTGCTGTTTAAGGCTGAAGCAGATGTCTCTCACACTACTGAAATCGTCACCAAAGCAGTTGATATAGCTGGAAATGTCCAACCCGAAAATGTGGGTGTCATCTGGAACCTGAGAGGAATACTAAACACGTCTTGGCACAGGGTCCGTGTTGAAGTGGAGGACCCTAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

397

Amino Acids

44.1

Weight (kDa)

5.07

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	120 - 237	1e-31	Oxidoreductase molybdopterin binding domain
Mo-co_dimer	PF03404	262 - 392	6.7e-37	Mo-co oxidoreductase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	261, 287, 295, 888, 1002
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	3 cut(s)	67, 214, 550
AcuI	CTGAAG	3 cut(s)	54, 990, 1056
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	967
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	6 cut(s)	85, 188, 413, 542, 692, 1172
AjiI	CACGTC	1 cut(s)	1149
AjnI	CCWGG	4 cut(s)	72, 637, 702, 847
AluBI	AGCT	3 cut(s)	9, 344, 1088
AluI	AGCT	3 cut(s)	9, 344, 1088
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	2 cut(s)	62, 1051
AlwI	GGATC	1 cut(s)	615
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	2 cut(s)	512, 782
ApeKI	GCWGC	1 cut(s)	999
ApoI	RAATTY	3 cut(s)	67, 214, 550
AspS9I	GGNCC	4 cut(s)	161, 512, 1162, 1180
AsuHPI	GGTGA	3 cut(s)	441, 1016, 1060
AsuII	TTCGAA	1 cut(s)	348
AvaII	GGWCC	3 cut(s)	161, 1162, 1180
AxyI	CCTNAGG	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	426, 459
BanII	GRGCYC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	1 cut(s)	1011
BccI	CCATC	4 cut(s)	57, 686, 784, 917
BciT130I	CCWGG	4 cut(s)	74, 639, 704, 849
BcoDI	GTCTC	2 cut(s)	62, 1051
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	744
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	2 cut(s)	262, 1000
BlsI	GCNGC	2 cut(s)	263, 1001
BmcAI	AGTACT	1 cut(s)	967
Bme1390I	CCNGG	4 cut(s)	74, 639, 704, 849
Bme18I	GGWCC	3 cut(s)	161, 1162, 1180
BmgBI	CACGTC	1 cut(s)	1149
BmgT120I	GGNCC	4 cut(s)	161, 512, 1162, 1180
BmiI	GGNNCC	5 cut(s)	78, 513, 1127, 1163, 1182
BmrFI	CCNGG	4 cut(s)	74, 639, 704, 849
BmrI	ACTGGG	2 cut(s)	125, 763
BmsI	GCATC	1 cut(s)	547
BmuI	ACTGGG	2 cut(s)	125, 763
BpmI	CTGGAG	2 cut(s)	845, 903
Bpu14I	TTCGAA	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	72, 157, 703
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	3 cut(s)	131, 758, 800
Bse21I	CCTNAGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	4 cut(s)	74, 639, 704, 849
BseDI	CCNNGG	3 cut(s)	72, 157, 703
BseGI	GGATG	2 cut(s)	49, 916
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	800, 1121
BseNI	ACTGG	3 cut(s)	131, 758, 800
BseXI	GCAGC	1 cut(s)	1011
Bsh1285I	CGRYCG	1 cut(s)	892
BshFI	GGCC	2 cut(s)	514, 784
BsiEI	CGRYCG	1 cut(s)	892
BsiHKAI	GWGCWC	1 cut(s)	655
BslFI	GGGAC	2 cut(s)	737, 959
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	2 cut(s)	62, 1051
BsmFI	GGGAC	2 cut(s)	737, 959
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	514, 784
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	2 cut(s)	19, 655
Bsp143I	GATC	2 cut(s)	607, 656
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	5 cut(s)	261, 287, 295, 888, 1002
BspANI	GGCC	2 cut(s)	514, 784
BspCNI	CTCAG	2 cut(s)	799, 1122
BspLI	GGNNCC	5 cut(s)	78, 513, 1127, 1163, 1182
BspPI	GGATC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	131, 758, 800
BssECI	CCNNGG	3 cut(s)	72, 157, 703
BssMI	GATC	2 cut(s)	607, 656
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	4 cut(s)	74, 639, 704, 849
Bst4CI	ACNGT	3 cut(s)	359, 748, 841
Bst6I	CTCTTC	1 cut(s)	956
BstAFI	CTTAAG	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	454, 671, 786, 1130
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	49, 916
BstKTI	GATC	2 cut(s)	610, 659
BstMAI	GTCTC	2 cut(s)	62, 1051
BstMBI	GATC	2 cut(s)	607, 656
BstMCI	CGRYCG	1 cut(s)	892
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 350, 398
BstNI	CCWGG	4 cut(s)	74, 639, 704, 849
BstSCI	CCNGG	4 cut(s)	72, 637, 702, 847
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	1011
Bsu36I	CCTNAGG	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	514, 784
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	1149
BtsCI	GGATG	2 cut(s)	49, 916
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	2 cut(s)	355, 882
CaiI	CAGNNNCTG	1 cut(s)	881
Cfr13I	GGNCC	4 cut(s)	161, 512, 1162, 1180
Csp6I	GTAC	1 cut(s)	966
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	6 cut(s)	158, 467, 611, 866, 936, 1017
CviQI	GTAC	1 cut(s)	966
DdeI	CTNAG	4 cut(s)	454, 671, 786, 1130
DpnI	GATC	2 cut(s)	609, 658
DpnII	GATC	2 cut(s)	607, 656
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	784
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	161, 1162, 1180
Eco57I	CTGAAG	3 cut(s)	54, 990, 1056
Eco81I	CCTNAGG	1 cut(s)	454
EcoO109I	RGGNCCY	2 cut(s)	512, 1180
EcoRII	CCWGG	4 cut(s)	72, 637, 702, 847
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	6 cut(s)	161, 470, 614, 869, 939, 1020
FaqI	GGGAC	2 cut(s)	737, 959
FatI	CATG	6 cut(s)	157, 466, 610, 865, 935, 1016
FauNDI	CATATG	2 cut(s)	577, 979
Fnu4HI	GCNGC	2 cut(s)	262, 1000
FokI	GGATG	2 cut(s)	36, 923
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	262, 1000
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	2 cut(s)	262, 1000
GsuI	CTGGAG	2 cut(s)	845, 903
HaeIII	GGCC	2 cut(s)	514, 784
Hin1II	CATG	6 cut(s)	161, 470, 614, 869, 939, 1020
HincII	GTYRAC	2 cut(s)	435, 774
HindII	GTYRAC	2 cut(s)	435, 774
HindIII	AAGCTT	2 cut(s)	7, 342
HinfI	GANTC	1 cut(s)	423
HphI	GGTGA	3 cut(s)	441, 1016, 1060
Hpy166II	GTNNAC	3 cut(s)	435, 751, 774
Hpy188I	TCNGA	4 cut(s)	34, 789, 953, 1193
Hpy188III	TCNNGA	6 cut(s)	315, 338, 410, 824, 882, 1123
Hpy8I	GTNNAC	3 cut(s)	435, 751, 774
HpyAV	CCTTC	1 cut(s)	774
HpyCH4III	ACNGT	3 cut(s)	359, 748, 841
HpyCH4IV	ACGT	2 cut(s)	100, 1148
HpyCH4V	TGCA	6 cut(s)	89, 374, 495, 560, 575, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 350, 398
HpyF3I	CTNAG	4 cut(s)	454, 671, 786, 1130
HpySE526I	ACGT	2 cut(s)	100, 1148
Hsp92II	CATG	6 cut(s)	161, 470, 614, 869, 939, 1020
Kzo9I	GATC	2 cut(s)	607, 656
Lsp1109I	GCAGC	1 cut(s)	1011
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	100, 1148
MaeIII	GTNAC	6 cut(s)	124, 239, 276, 359, 1004, 1066
MalI	GATC	2 cut(s)	609, 658
MboI	GATC	2 cut(s)	607, 656
MboII	GAAGA	4 cut(s)	47, 243, 842, 973
MhlI	GDGCHC	2 cut(s)	19, 655
MluCI	AATT	8 cut(s)	25, 67, 165, 214, 318, 528, 550, 1186
MmeI	TCCRAC	1 cut(s)	1123
MseI	TTAA	2 cut(s)	11, 1029
MslI	CAYNNNNRTG	1 cut(s)	870
MspA1I	CMGCKG	1 cut(s)	1002
MspCI	CTTAAG	1 cut(s)	10
MspR9I	CCNGG	4 cut(s)	74, 639, 704, 849
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	4 cut(s)	74, 639, 704, 849
MwoI	GCNNNNNNNGC	3 cut(s)	113, 350, 398
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	2 cut(s)	577, 979
NdeII	GATC	2 cut(s)	607, 656
NlaIII	CATG	6 cut(s)	161, 470, 614, 869, 939, 1020
NlaIV	GGNNCC	5 cut(s)	78, 513, 1127, 1163, 1182
NmuCI	GTSAC	4 cut(s)	124, 359, 1004, 1066
NspV	TTCGAA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	784
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	263, 1001
PpuMI	RGGWCCY	1 cut(s)	1180
Psp5II	RGGWCCY	1 cut(s)	1180
Psp6I	CCWGG	4 cut(s)	72, 637, 702, 847
PspGI	CCWGG	4 cut(s)	72, 637, 702, 847
PspN4I	GGNNCC	5 cut(s)	78, 513, 1127, 1163, 1182
PspPI	GGNCC	4 cut(s)	161, 512, 1162, 1180
PspPPI	RGGWCCY	1 cut(s)	1180
PstNI	CAGNNNCTG	1 cut(s)	881
RsaI	GTAC	1 cut(s)	967
RsaNI	GTAC	1 cut(s)	966
RseI	CAYNNNNRTG	1 cut(s)	870
SaqAI	TTAA	2 cut(s)	11, 1029
SatI	GCNGC	2 cut(s)	262, 1000
Sau3AI	GATC	2 cut(s)	607, 656
Sau96I	GGNCC	4 cut(s)	161, 512, 1162, 1180
ScaI	AGTACT	1 cut(s)	967
ScrFI	CCNGG	4 cut(s)	74, 639, 704, 849
SduI	GDGCHC	2 cut(s)	19, 655
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	348
SinI	GGWCC	3 cut(s)	161, 1162, 1180
SmiMI	CAYNNNNRTG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	8 cut(s)	25, 67, 165, 214, 318, 528, 550, 1186
SseBI	AGGCCT	1 cut(s)	784
SsiI	CCGC	5 cut(s)	261, 287, 295, 888, 1002
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	1 cut(s)	777
StuI	AGGCCT	1 cut(s)	784
StyD4I	CCNGG	4 cut(s)	72, 637, 702, 847
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	359, 748, 841
TaiI	ACGT	2 cut(s)	103, 1151
TaqI	TCGA	4 cut(s)	273, 348, 655, 921
TasI	AATT	8 cut(s)	25, 67, 165, 214, 318, 528, 550, 1186
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	2 cut(s)	11, 1029
Tru9I	TTAA	2 cut(s)	11, 1029
TscAI	CASTG	2 cut(s)	362, 882
TseFI	GTSAC	4 cut(s)	124, 359, 1004, 1066
TseI	GCWGC	1 cut(s)	999
Tsp45I	GTSAC	4 cut(s)	124, 359, 1004, 1066
TspDTI	ATGAA	4 cut(s)	594, 599, 711, 854
TspGWI	ACGGA	1 cut(s)	1154
TspRI	CASTG	2 cut(s)	362, 882
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	3 cut(s)	161, 1162, 1180
XapI	RAATTY	3 cut(s)	67, 214, 550
XspI	CTAG	1 cut(s)	777
ZrmI	AGTACT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.