Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Reverse (-)

27510517 .. 27514327

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G267700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAATCGGAGTTGGGTTTGATAGAGCAATCATTCAATAGCCGTTACTCGCTTTGGGTCCAGGAAGCTCTGAGCGAATTGCCCGACAGTTTCACAATCACTGATCCTTGTCTCTCTGGCCACCCAATTGTATTTGCGAGCAAAGGGTTCTTGAAAATGTTGGGTTATTCGAAAAGCGAGGTGATTGGCAGAAATGGTAGAGTGTTTCAAGGTCCGGGGACTTGCAGAAGGTCGGTTGTGGAAATAAGAGAGGCCATCAGGGAAGAGAGAGCTATTCAGATTAATTTGCTGAATTATCGCAAAGACGGGACACCCTTTTGGATGTTGTTTCATATGTGCCCTGTTTTTAACAAAGAAGATGGGATGGTGACTCATTTTGTGGGAGTTCAGGTTCCGATTTCGAGGAAGCCGAGGCGGTCTGGCAGAAACGGGGTTAATTTGTGCGAAGAGGGGTCTAGGATGAATGATATCTTTTATGGGTCTTGTAGAAAAGAAGTGTGCTCTTCGGTTGAATTGGGTCGTGTCTTGCCTCTGGAGTCTGCATTTGATGATGCTGATGACAGAGGATTGGAGATTGAAGAGTCGTGCGAGGCAAGTGATGTAGAGAAGACAAGAGCTGCAACTGCCATTAATAACATATTGTCTGTGCTAACTCACTATAGCGAGTTAACGGGCAGATTGGTCTGTGGAAAGAGATGCAGCTTATCTCTTGGCCTTCTCAGTTCATCCTTAAATATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTGATCCACACTTACCAGACATGCCTATAGTTTATGCAAGTGATGCCTTCTTCAAATTGACAGGTTATACCAGACATGAAGTCTTGGGGCGCAATTGTAGATTTTTAAGTGGGGTGGATACAGATTCCTCAATGATATATCGGATAAAGGAAAGCATTCAAAACGAAAAAGCATGCACAGTACGTATCTTGAATTACAGGAAGGATAAGAGTTCATTTTGGAATCTCCTACACATATCACCTGTTCGTAATGCTTCTGGCAAGATTGCATACTTTGTGGGTGTTCAGATGGAAGAAGGGTGTAAAAACCAGGTTGGACATGGGCTAAGCCCTGAGATGAGGCAGCTTAGCGCCGTTGGTGCAGTCAGAATTGCAGTAAGGACCTTATCAATGGGTGCTGGCCCTTCCAAATCTGAAGAGAGTAACAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

402

Amino Acids

44.66

Weight (kDa)

8.21

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	2 cut(s)	98, 770
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	1206
AfaI	GTAC	1 cut(s)	954
AgsI	TTSAA	8 cut(s)	37, 154, 209, 512, 578, 826, 932, 964
AhdI	GACNNNNNGTC	1 cut(s)	851
AjnI	CCWGG	2 cut(s)	60, 1080
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	6 cut(s)	68, 272, 617, 702, 762, 1117
AluI	AGCT	6 cut(s)	68, 272, 617, 702, 762, 1117
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	98, 770
AoxI	GGCC	4 cut(s)	118, 252, 712, 1171
ApeKI	GCWGC	3 cut(s)	617, 699, 1114
AseI	ATTAAT	2 cut(s)	282, 630
Asp700I	GAANNNNTTC	1 cut(s)	927
AspLEI	GCGC	2 cut(s)	864, 1124
AspS9I	GGNCC	4 cut(s)	58, 212, 1152, 1172
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	193, 379, 1002
AsuII	TTCGAA	1 cut(s)	170
AvaII	GGWCC	3 cut(s)	58, 212, 1152
BaeGI	GKGCMC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	503
BbvI	GCAGC	3 cut(s)	604, 711, 1126
BccI	CCATC	4 cut(s)	263, 353, 358, 1054
BceAI	ACGGC	2 cut(s)	27, 1109
BciT130I	CCWGG	2 cut(s)	62, 1082
BciVI	GTATCC	1 cut(s)	883
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	2 cut(s)	658, 798
BfoI	RGCGCY	1 cut(s)	1125
BfuI	GTATCC	1 cut(s)	883
BisI	GCNGC	3 cut(s)	618, 700, 1115
BlpI	GCTNAGC	2 cut(s)	1097, 1118
BlsI	GCNGC	3 cut(s)	619, 701, 1116
Bme1390I	CCNGG	3 cut(s)	62, 216, 1082
Bme18I	GGWCC	3 cut(s)	58, 212, 1152
BmeRI	GACNNNNNGTC	1 cut(s)	851
BmgT120I	GGNCC	4 cut(s)	58, 212, 1152, 1172
BmiI	GGNNCC	2 cut(s)	59, 393
BmrFI	CCNGG	3 cut(s)	62, 216, 1082
BmsI	GCATC	3 cut(s)	541, 686, 805
BpiI	GAAGAC	1 cut(s)	614
BpmI	CTGGAG	1 cut(s)	554
Bpu1102I	GCTNAGC	2 cut(s)	1097, 1118
Bpu14I	TTCGAA	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	956
BsaJI	CCNNGG	2 cut(s)	215, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
BseBI	CCWGG	2 cut(s)	62, 1082
BseDI	CCNNGG	2 cut(s)	215, 410
BseGI	GGATG	4 cut(s)	327, 369, 465, 725
BseMII	CTCAG	3 cut(s)	62, 733, 1095
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	3 cut(s)	604, 711, 1126
BsgI	GTGCAG	1 cut(s)	1152
BshFI	GGCC	4 cut(s)	120, 254, 714, 1173
BsiHKAI	GWGCWC	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	2 cut(s)	232, 322
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	2 cut(s)	232, 322
BsmI	GAATGC	1 cut(s)	927
BsnI	GGCC	4 cut(s)	120, 254, 714, 1173
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	341, 503
Bsp143I	GATC	2 cut(s)	103, 775
Bsp1720I	GCTNAGC	2 cut(s)	1097, 1118
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	4 cut(s)	120, 254, 714, 1173
BspCNI	CTCAG	3 cut(s)	63, 732, 1096
BspLI	GGNNCC	2 cut(s)	59, 393
BspPI	GGATC	2 cut(s)	98, 770
BspQI	GCTCTTC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	215, 410
BssMI	GATC	2 cut(s)	103, 775
Bst2UI	CCWGG	2 cut(s)	62, 1082
Bst4CI	ACNGT	2 cut(s)	89, 952
Bst6I	CTCTTC	5 cut(s)	258, 441, 508, 573, 1182
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	139, 946, 1171
BstDEI	CTNAG	5 cut(s)	71, 719, 1097, 1104, 1118
BstF5I	GGATG	4 cut(s)	327, 369, 465, 725
BstH2I	RGCGCY	1 cut(s)	1125
BstHHI	GCGC	2 cut(s)	864, 1124
BstKTI	GATC	2 cut(s)	106, 778
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	103, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	623, 815, 1130
BstNI	CCWGG	2 cut(s)	62, 1082
BstNSI	RCATGY	2 cut(s)	796, 948
BstSCI	CCNGG	3 cut(s)	60, 214, 1080
BstSFI	CTRYAG	2 cut(s)	658, 798
BstSLI	GKGCMC	1 cut(s)	341
BstSNI	TACGTA	1 cut(s)	956
BstV1I	GCAGC	3 cut(s)	604, 711, 1126
BstV2I	GAAGAC	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	883
BsuRI	GGCC	4 cut(s)	120, 254, 714, 1173
BtsCI	GGATG	4 cut(s)	327, 369, 465, 725
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	139, 946, 1171
CfoI	GCGC	2 cut(s)	864, 1124
Cfr13I	GGNCC	4 cut(s)	58, 212, 1152, 1172
CsiI	ACCWGGT	1 cut(s)	1080
Csp6I	GTAC	1 cut(s)	953
CviAII	CATG	4 cut(s)	793, 848, 945, 1091
CviQI	GTAC	1 cut(s)	953
DdeI	CTNAG	5 cut(s)	71, 719, 1097, 1104, 1118
DpnI	GATC	2 cut(s)	105, 777
DpnII	GATC	2 cut(s)	103, 775
DriI	GACNNNNNGTC	1 cut(s)	851
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	5 cut(s)	258, 441, 508, 573, 1182
Eam1105I	GACNNNNNGTC	1 cut(s)	851
EarI	CTCTTC	5 cut(s)	258, 441, 508, 573, 1182
Eco105I	TACGTA	1 cut(s)	956
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	3 cut(s)	58, 212, 1152
Eco57I	CTGAAG	1 cut(s)	1206
EcoO109I	RGGNCCY	1 cut(s)	1152
EcoRII	CCWGG	2 cut(s)	60, 1080
EcoRV	GATATC	1 cut(s)	469
FaeI	CATG	4 cut(s)	796, 851, 948, 1094
FaqI	GGGAC	2 cut(s)	232, 322
FatI	CATG	4 cut(s)	792, 847, 944, 1090
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	618, 700, 1115
FokI	GGATG	4 cut(s)	334, 376, 472, 712
Fsp4HI	GCNGC	3 cut(s)	618, 700, 1115
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	2 cut(s)	863, 1123
GluI	GCNGC	3 cut(s)	618, 700, 1115
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	1125
HaeIII	GGCC	4 cut(s)	120, 254, 714, 1173
HapII	CCGG	1 cut(s)	215
HhaI	GCGC	2 cut(s)	864, 1124
Hin1II	CATG	4 cut(s)	796, 851, 948, 1094
Hin6I	GCGC	2 cut(s)	862, 1122
HinP1I	GCGC	2 cut(s)	862, 1122
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	7 cut(s)	5, 370, 536, 581, 750, 896, 994
HpaI	GTTAAC	1 cut(s)	669
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	193, 379, 1002
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	9 cut(s)	10, 72, 279, 396, 915, 1059, 1139, 1186, 1205
Hpy188III	TCNNGA	3 cut(s)	151, 533, 961
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	6 cut(s)	222, 725, 829, 967, 1061, 1185
HpyCH4III	ACNGT	2 cut(s)	89, 952
HpyCH4IV	ACGT	1 cut(s)	955
HpyCH4V	TGCA	9 cut(s)	225, 542, 620, 699, 809, 948, 1040, 1133, 1145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	623, 815, 1130
HpyF3I	CTNAG	5 cut(s)	71, 719, 1097, 1104, 1118
HpySE526I	ACGT	1 cut(s)	955
Hsp92II	CATG	4 cut(s)	796, 851, 948, 1094
HspAI	GCGC	2 cut(s)	862, 1122
KspAI	GTTAAC	1 cut(s)	669
Kzo9I	GATC	2 cut(s)	103, 775
LguI	GCTCTTC	1 cut(s)	508
Lsp1109I	GCAGC	3 cut(s)	604, 711, 1126
LweI	GCATC	3 cut(s)	541, 686, 805
MabI	ACCWGGT	1 cut(s)	1080
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	955
MaeIII	GTNAC	3 cut(s)	44, 367, 1193
MalI	GATC	2 cut(s)	105, 777
MboI	GATC	2 cut(s)	103, 775
MboII	GAAGA	9 cut(s)	275, 368, 458, 495, 590, 619, 814, 1076, 1199
MfeI	CAATTG	2 cut(s)	126, 865
MhlI	GDGCHC	2 cut(s)	341, 503
MlsI	TGGCCA	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	3 cut(s)	364, 545, 590
MmeI	TCCRAC	1 cut(s)	1066
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	8 cut(s)	282, 348, 435, 630, 668, 731, 770, 878
Msp20I	TGGCCA	1 cut(s)	120
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	3 cut(s)	62, 216, 1082
MunI	CAATTG	2 cut(s)	126, 865
Mva1269I	GAATGC	1 cut(s)	927
MvaI	CCWGG	2 cut(s)	62, 1082
MwoI	GCNNNNNNNGC	3 cut(s)	623, 815, 1130
NciI	CCSGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	2 cut(s)	103, 775
NlaIII	CATG	4 cut(s)	796, 851, 948, 1094
NlaIV	GGNNCC	2 cut(s)	59, 393
NmeAIII	GCCGAG	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	2 cut(s)	796, 948
NspV	TTCGAA	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	948
PciSI	GCTCTTC	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	1 cut(s)	927
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	4 cut(s)	5, 750, 896, 994
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	619, 701, 1116
PleI	GAGTC	3 cut(s)	364, 544, 589
PpsI	GAGTC	3 cut(s)	364, 544, 589
Ppu21I	YACGTR	1 cut(s)	956
PpuMI	RGGWCCY	1 cut(s)	1152
PshBI	ATTAAT	2 cut(s)	282, 630
Psp5II	RGGWCCY	1 cut(s)	1152
Psp6I	CCWGG	2 cut(s)	60, 1080
PspGI	CCWGG	2 cut(s)	60, 1080
PspN4I	GGNNCC	2 cut(s)	59, 393
PspPI	GGNCC	4 cut(s)	58, 212, 1152, 1172
PspPPI	RGGWCCY	1 cut(s)	1152
RsaI	GTAC	1 cut(s)	954
RsaNI	GTAC	1 cut(s)	953
SapI	GCTCTTC	1 cut(s)	508
SaqAI	TTAA	8 cut(s)	282, 348, 435, 630, 668, 731, 770, 878
SatI	GCNGC	3 cut(s)	618, 700, 1115
Sau3AI	GATC	2 cut(s)	103, 775
Sau96I	GGNCC	4 cut(s)	58, 212, 1152, 1172
SchI	GAGTC	3 cut(s)	364, 545, 590
ScrFI	CCNGG	3 cut(s)	62, 216, 1082
SduI	GDGCHC	2 cut(s)	341, 503
SexAI	ACCWGGT	1 cut(s)	1080
SfaNI	GCATC	3 cut(s)	541, 686, 805
SfcI	CTRYAG	2 cut(s)	658, 798
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	3 cut(s)	58, 212, 1152
SnaBI	TACGTA	1 cut(s)	956
SphI	GCATGC	1 cut(s)	948
SsiI	CCGC	1 cut(s)	415
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	60, 214, 1080
TaaI	ACNGT	2 cut(s)	89, 952
TaiI	ACGT	1 cut(s)	958
TaqI	TCGA	2 cut(s)	170, 401
TfiI	GAWTC	4 cut(s)	5, 750, 896, 994
Tru1I	TTAA	8 cut(s)	282, 348, 435, 630, 668, 731, 770, 878
Tru9I	TTAA	8 cut(s)	282, 348, 435, 630, 668, 731, 770, 878
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	617, 699, 1114
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	5 cut(s)	320, 476, 714, 864, 975
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	3 cut(s)	58, 212, 1152
VspI	ATTAAT	2 cut(s)	282, 630
XceI	RCATGY	2 cut(s)	796, 948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1088
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.