Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005796

Physical Location & Seq

Genomic Coordinates Forward (+)

61429837 .. 61433671

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAGTCGGAGTTGGGTTTACTAGAGCAATCAATCAATAGTCGTTACTCGCTTTTGGTCCAAGAAGCTCTGAACGAATTGCCGGACAGTTTTACGTTGACTGATCCTTATGTTTCCGGCCAACCCATCGTTTTTGCGAGCGAAGGGTTCCTGAAAATGATGGGGTACTCGAAAACGGAGGTGATTGGGAGGAATGGGAGGATATTTCAAGGGCCAGGTACTTGTAGAAGGTCGGTTATGGAAATAAGGGAGGCCATTAGAGAAGAGAGAGGTATTCAGATTAATTTGGTGAATTATAGGAGGGATGGGACACCCTTCTGGATGCTGTTTCATATGTGCCCTGTGTTTAGCAAAGAGGATGGGAGGGTGATTCATTTTGTGGGAGTTCAAGTTCCCATTTTGCGAAAACCGAGGAGGAGGAATGGGGTTGGTTTGGTGTATGAGGAGGAGAGTAGGGTGAATGAGAGTGTTTATGGGTCTTGTAGGAGAGAAGTGTGCTCTGATTCGTTGGTGGAATTGGGCCGTGCTCTGTCTCTGGAGTGTGCATTGGATGATGCTGATAATAGAGGTTTTGTTGCTGAGTCGATTGCTCTTGTAGGACTGGAGATTGAAGAGACGTGTGCGGCAAGTGAATTAGAGAAGCAAAGAGCTGCGTCTGCCATGAATAACATCTTGTCTGTGCTAACACATTATAGCGAGTTAACCGGCAGACTGGTGTGTGGAAAGAGATGCAACTTAACTGGGGTGGGCCTTCTCAGTTCATCCTTAAATATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACAGATCCGCACTTACCTGACATGCCTATAGTTTACGCAAGTGAGGCCTTCTTCAAATTGACAGGTTATGCCAGACACGAAGTCTTGGGACGCAATTGTAGATTTCTAAGTGGCGAGGATACGGATTCCTCAGCGATATATCGGATAAAGGAAAGCGTTCAGAATGAAAAAGCATGCACAGTACGTATCTTGAATTACAGGAAGGATAAGAGTTCATTTTGGAATCTTCTTCATGTATCACCAATTCGTAATGCTTCTGGCAAGATTGCGTACTTTGTGGGTGTTCAGATGGAAGAAGCCTGTAAGAACCAGGATGGGCATGGGCTAAGCCCTGAGATGAGGCAGCTTAGTGCCGTTGGAGCCGTCAGGATTGCGGTGAGGAGTTTATCAATGGGTGCCGGCACATCCAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

407

Amino Acids

45.23

Weight (kDa)

7.53

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_9	PF13426	39 - 130	2.2e-16	PAS domain
PAS_3	PF08447	43 - 129	2.2e-06	PAS fold
PAS_9	PF13426	267 - 365	5.9e-18	PAS domain
PAS	PF00989	279 - 365	2.8e-08	PAS fold
PAS_3	PF08447	279 - 364	2.7e-06	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02710 AT2G02710 AT2G02710 AT2G02710
fragaria_vesca	FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970 FvH4_4g31970
malus_domestica	MD13G1079100.v1.1 MD16G1078900.v1.1
prunus_persica	Prupe.1G267700_v2.0.a1 Prupe.1G267700_v2.0.a1
pyrus_communis	pycom13g06870 pycom16g06820
rosa_chinensis	RchiOBHm_Chr4g0440651
rosa_laevigata	RLG00000006163
rosa_multiflora	Rmu_co8473601.1_g000001 Rmu_sc0008018.1_g000008 Rmu_sc0032009.1_g000003
rosa_roxburghii	Rroxscaffold_5G00381460
rosa_rugosa	Rorug04G0327300.1 Rorug04G0327400
rosa_samantha	Rh4AG379100 Rh4BG391900 Rh4CG406400 Rh4DG385600
rosa_wichuraiana	Rw4G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1202
AciI	CCGC	3 cut(s)	623, 815, 1181
AclWI	GGATC	2 cut(s)	98, 806
AcoI	YGGCCR	1 cut(s)	118
AfaI	GTAC	4 cut(s)	167, 220, 990, 1079
AflIII	ACRYGT	1 cut(s)	617
AgsI	TTSAA	5 cut(s)	209, 389, 611, 862, 1000
AhdI	GACNNNNNGTC	1 cut(s)	887
AjiI	CACGTC	1 cut(s)	618
AjnI	CCWGG	2 cut(s)	214, 1116
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	4 cut(s)	68, 650, 798, 1153
AluI	AGCT	4 cut(s)	68, 650, 798, 1153
Alw21I	GWGCWC	2 cut(s)	500, 529
Alw26I	GTCTC	2 cut(s)	537, 608
AlwI	GGATC	2 cut(s)	98, 806
AoxI	GGCC	6 cut(s)	118, 212, 252, 520, 748, 852
ApeKI	GCWGC	2 cut(s)	650, 1150
AseI	ATTAAT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	963
AspS9I	GGNCC	4 cut(s)	58, 212, 520, 748
AsuHPI	GGTGA	6 cut(s)	193, 301, 379, 469, 1038, 1195
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	1202
Bbv12I	GWGCWC	2 cut(s)	500, 529
BbvCI	CCTCAGC	1 cut(s)	937
BbvI	GCAGC	2 cut(s)	637, 1162
BccI	CCATC	6 cut(s)	134, 154, 299, 353, 1090, 1115
BceAI	ACGGC	3 cut(s)	507, 1145, 1154
BciT130I	CCWGG	2 cut(s)	216, 1118
BciVI	GTATCC	1 cut(s)	919
BcoDI	GTCTC	2 cut(s)	537, 608
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	834
BfuI	GTATCC	1 cut(s)	919
BisI	GCNGC	3 cut(s)	624, 651, 1151
BlpI	GCTNAGC	1 cut(s)	1133
BlsI	GCNGC	3 cut(s)	625, 652, 1152
Bme1390I	CCNGG	2 cut(s)	216, 1118
Bme18I	GGWCC	1 cut(s)	58
BmeRI	GACNNNNNGTC	1 cut(s)	887
BmgBI	CACGTC	1 cut(s)	618
BmgT120I	GGNCC	4 cut(s)	58, 212, 520, 748
BmiI	GGNNCC	3 cut(s)	149, 1168, 1204
BmrFI	CCNGG	2 cut(s)	216, 1118
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	3 cut(s)	312, 544, 719
BmuI	ACTGGG	1 cut(s)	750
BpmI	CTGGAG	2 cut(s)	557, 623
Bpu10I	CCTNAGC	1 cut(s)	937
Bpu1102I	GCTNAGC	1 cut(s)	1133
BsaAI	YACGTR	1 cut(s)	992
BsaJI	CCNNGG	1 cut(s)	410
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 375, 405
Bse118I	RCCGGY	2 cut(s)	704, 1205
Bse1I	ACTGG	3 cut(s)	606, 717, 745
BseBI	CCWGG	2 cut(s)	216, 1118
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	7 cut(s)	310, 327, 364, 556, 761, 1126, 1211
BseMII	CTCAG	4 cut(s)	570, 769, 951, 1131
BseNI	ACTGG	3 cut(s)	606, 717, 745
BseRI	GAGGAG	5 cut(s)	427, 430, 458, 461, 1201
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	637, 1162
BshFI	GGCC	6 cut(s)	120, 214, 254, 522, 750, 854
BshNI	GGYRCC	1 cut(s)	1202
BsiHKAI	GWGCWC	2 cut(s)	500, 529
BsiSI	CCGG	4 cut(s)	83, 117, 705, 1206
BslFI	GGGAC	2 cut(s)	322, 909
BsmAI	GTCTC	2 cut(s)	537, 608
BsmBI	CGTCTC	1 cut(s)	608
BsmFI	GGGAC	2 cut(s)	322, 909
BsnI	GGCC	6 cut(s)	120, 214, 254, 522, 750, 854
Bsp1286I	GDGCHC	3 cut(s)	341, 500, 529
Bsp143I	GATC	2 cut(s)	103, 811
Bsp1720I	GCTNAGC	1 cut(s)	1133
BspACI	CCGC	3 cut(s)	623, 815, 1181
BspANI	GGCC	6 cut(s)	120, 214, 254, 522, 750, 854
BspCNI	CTCAG	4 cut(s)	571, 768, 950, 1132
BspLI	GGNNCC	3 cut(s)	149, 1168, 1204
BspPI	GGATC	2 cut(s)	98, 806
BspT107I	GGYRCC	1 cut(s)	1202
BsrFI	RCCGGY	2 cut(s)	704, 1205
BsrI	ACTGG	3 cut(s)	606, 717, 745
BssAI	RCCGGY	2 cut(s)	704, 1205
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	103, 811
Bst2UI	CCWGG	2 cut(s)	216, 1118
Bst4CI	ACNGT	2 cut(s)	89, 988
Bst6I	CTCTTC	2 cut(s)	258, 606
BstBAI	YACGTR	1 cut(s)	992
BstC8I	GCNNGC	3 cut(s)	139, 982, 1207
BstDEI	CTNAG	7 cut(s)	579, 755, 914, 937, 1133, 1140, 1154
BstF5I	GGATG	7 cut(s)	310, 327, 364, 556, 761, 1126, 1211
BstKTI	GATC	2 cut(s)	106, 814
BstMAI	GTCTC	2 cut(s)	537, 608
BstMBI	GATC	2 cut(s)	103, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 851, 1166
BstNI	CCWGG	2 cut(s)	216, 1118
BstNSI	RCATGY	2 cut(s)	832, 984
BstSCI	CCNGG	2 cut(s)	214, 1116
BstSFI	CTRYAG	1 cut(s)	834
BstSLI	GKGCMC	1 cut(s)	341
BstSNI	TACGTA	1 cut(s)	992
BstV1I	GCAGC	2 cut(s)	637, 1162
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
BsuI	GTATCC	1 cut(s)	919
BsuRI	GGCC	6 cut(s)	120, 214, 254, 522, 750, 854
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	7 cut(s)	310, 327, 364, 556, 761, 1126, 1211
Cac8I	GCNNGC	3 cut(s)	139, 982, 1207
Cfr10I	RCCGGY	2 cut(s)	704, 1205
Cfr13I	GGNCC	4 cut(s)	58, 212, 520, 748
CseI	GACGC	2 cut(s)	642, 906
Csp6I	GTAC	4 cut(s)	166, 219, 989, 1078
CviAII	CATG	5 cut(s)	661, 829, 981, 1040, 1127
CviQI	GTAC	4 cut(s)	166, 219, 989, 1078
DdeI	CTNAG	7 cut(s)	579, 755, 914, 937, 1133, 1140, 1154
DpnI	GATC	2 cut(s)	105, 813
DpnII	GATC	2 cut(s)	103, 811
DriI	GACNNNNNGTC	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	258, 606
Eam1105I	GACNNNNNGTC	1 cut(s)	887
EarI	CTCTTC	2 cut(s)	258, 606
Eco105I	TACGTA	1 cut(s)	992
Eco147I	AGGCCT	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	214, 1116
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	5 cut(s)	664, 832, 984, 1043, 1130
FaqI	GGGAC	2 cut(s)	322, 909
FatI	CATG	5 cut(s)	660, 828, 980, 1039, 1126
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	624, 651, 1151
FokI	GGATG	7 cut(s)	317, 334, 371, 563, 748, 1133, 1198
Fsp4HI	GCNGC	3 cut(s)	624, 651, 1151
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	624, 651, 1151
GsuI	CTGGAG	2 cut(s)	557, 623
HaeIII	GGCC	6 cut(s)	120, 214, 254, 522, 750, 854
HapII	CCGG	4 cut(s)	83, 117, 705, 1206
HgaI	GACGC	2 cut(s)	642, 906
Hin1II	CATG	5 cut(s)	664, 832, 984, 1043, 1130
HincII	GTYRAC	2 cut(s)	99, 702
HindII	GTYRAC	2 cut(s)	99, 702
HindIII	AAGCTT	1 cut(s)	796
HinfI	GANTC	7 cut(s)	5, 370, 503, 581, 786, 932, 1030
HpaI	GTTAAC	1 cut(s)	702
HpaII	CCGG	4 cut(s)	83, 117, 705, 1206
HphI	GGTGA	6 cut(s)	193, 301, 379, 469, 1038, 1195
Hpy166II	GTNNAC	4 cut(s)	20, 99, 702, 841
Hpy188I	TCNGA	7 cut(s)	10, 72, 279, 502, 951, 969, 1095
Hpy188III	TCNNGA	6 cut(s)	151, 319, 536, 997, 1174, 1221
Hpy8I	GTNNAC	4 cut(s)	20, 99, 702, 841
HpyAV	CCTTC	6 cut(s)	137, 222, 325, 761, 865, 1003
HpyCH4III	ACNGT	2 cut(s)	89, 988
HpyCH4IV	ACGT	3 cut(s)	95, 617, 991
HpyCH4V	TGCA	3 cut(s)	545, 732, 984
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 851, 1166
HpyF3I	CTNAG	7 cut(s)	579, 755, 914, 937, 1133, 1140, 1154
HpySE526I	ACGT	3 cut(s)	95, 617, 991
Hsp92II	CATG	5 cut(s)	664, 832, 984, 1043, 1130
KroI	GCCGGC	1 cut(s)	1205
KroNI	GCCGGC	1 cut(s)	1207
KspAI	GTTAAC	1 cut(s)	702
Kzo9I	GATC	2 cut(s)	103, 811
LmnI	GCTCC	1 cut(s)	1166
Lsp1109I	GCAGC	2 cut(s)	637, 1162
LweI	GCATC	3 cut(s)	312, 544, 719
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	3 cut(s)	95, 617, 991
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	105, 813
MboI	GATC	2 cut(s)	103, 811
MboII	GAAGA	6 cut(s)	275, 623, 850, 1025, 1028, 1112
MfeI	CAATTG	1 cut(s)	901
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	3 cut(s)	341, 500, 529
MluCI	AATT	9 cut(s)	77, 283, 292, 515, 632, 863, 901, 1000, 1050
MlyI	GAGTC	2 cut(s)	14, 590
MmeI	TCCRAC	1 cut(s)	1144
MroNI	GCCGGC	1 cut(s)	1205
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	5 cut(s)	282, 701, 737, 767, 806
MspI	CCGG	4 cut(s)	83, 117, 705, 1206
MspR9I	CCNGG	2 cut(s)	216, 1118
MunI	CAATTG	1 cut(s)	901
MvaI	CCWGG	2 cut(s)	216, 1118
MwoI	GCNNNNNNNGC	3 cut(s)	656, 851, 1166
NaeI	GCCGGC	1 cut(s)	1207
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	2 cut(s)	103, 811
NgoMIV	GCCGGC	1 cut(s)	1205
NlaIII	CATG	5 cut(s)	664, 832, 984, 1043, 1130
NlaIV	GGNNCC	3 cut(s)	149, 1168, 1204
NspI	RCATGY	2 cut(s)	832, 984
PaeI	GCATGC	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	854
PdiI	GCCGGC	1 cut(s)	1207
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	5 cut(s)	370, 503, 786, 932, 1030
PkrI	GCNGC	3 cut(s)	625, 652, 1152
PleI	GAGTC	2 cut(s)	13, 589
PpsI	GAGTC	2 cut(s)	13, 589
Ppu21I	YACGTR	1 cut(s)	992
PshBI	ATTAAT	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	214, 1116
PspGI	CCWGG	2 cut(s)	214, 1116
PspN4I	GGNNCC	3 cut(s)	149, 1168, 1204
PspPI	GGNCC	4 cut(s)	58, 212, 520, 748
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	4 cut(s)	167, 220, 990, 1079
RsaNI	GTAC	4 cut(s)	166, 219, 989, 1078
SaqAI	TTAA	5 cut(s)	282, 701, 737, 767, 806
SatI	GCNGC	3 cut(s)	624, 651, 1151
Sau3AI	GATC	2 cut(s)	103, 811
Sau96I	GGNCC	4 cut(s)	58, 212, 520, 748
SchI	GAGTC	2 cut(s)	14, 590
ScrFI	CCNGG	2 cut(s)	216, 1118
SduI	GDGCHC	3 cut(s)	341, 500, 529
SfaNI	GCATC	3 cut(s)	312, 544, 719
SfcI	CTRYAG	1 cut(s)	834
SinI	GGWCC	1 cut(s)	58
SnaBI	TACGTA	1 cut(s)	992
SphI	GCATGC	1 cut(s)	984
Sse9I	AATT	9 cut(s)	77, 283, 292, 515, 632, 863, 901, 1000, 1050
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	3 cut(s)	623, 815, 1181
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	2 cut(s)	214, 1116
TaaI	ACNGT	2 cut(s)	89, 988
TaiI	ACGT	3 cut(s)	98, 620, 994
TaqI	TCGA	2 cut(s)	170, 584
TasI	AATT	9 cut(s)	77, 283, 292, 515, 632, 863, 901, 1000, 1050
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	5 cut(s)	370, 503, 786, 932, 1030
Tru1I	TTAA	5 cut(s)	282, 701, 737, 767, 806
Tru9I	TTAA	5 cut(s)	282, 701, 737, 767, 806
TseI	GCWGC	2 cut(s)	650, 1150
TspDTI	ATGAA	7 cut(s)	320, 362, 677, 750, 987, 1011, 1028
TspGWI	ACGGA	2 cut(s)	191, 944
VpaK11BI	GGWCC	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	282
XceI	RCATGY	2 cut(s)	832, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1124
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.