Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016684

Physical Location & Seq

Genomic Coordinates Forward (+)

868359 .. 870432

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGGCGATATCTTCAGCTTCACTAATATCATCATTCTCACACGCAGAAACGTTCACTAAGCATTCGAAAATCGACACTGTGAATACACAAAACCCGATTCTTCTGATTTCCAAATGCAATTCTCTAAGAGAGCTGATGCAAATTCAAGCTTACGCGATCAAATCTCATATTGAAGATGTTTCCTTCGTCGCTAAGCTGATAAATTTCTGCACTGAGTCTCCAACGGAGTCTTCAATGTCATATGCACGCCACTTGTTCGAGGCAATGTCTGAACCAGATATTGTCATTTTTAATTCTATGGCTCGTGGGTATTCTCGCTTCACGAATCCTCTTGAGGTTTTTAGTCTCTTCGTTGAGATCTTAGAAGATGGTATTTTACCTGACAACTACACTTTCCCGTCTCTTCTCAAAGCTTGTGCAGTAGCAAAGGCGTTAGAAGAAGGTAGACAATTGCATTGTTTGTCGATGAAACTAGGGCTTGATGATAATGTCTATGTTTGTCCAACGCTTATTAATATGTACACTGAGTGTGAAGATGTGGATTCTGCTCGTTGTGTGTTTGATCGGATTGTTGAGCCGTGTGTTGTTTGTTATAATGCTATGATCACGGGTTATGCGAGAAGAAACAGACCGAACGAGGCTTTATCTTTGTTCCGTGAAATGCAAGGTAAGTACTTGAAGCCGAATGAGATTACCCTTTTGAGTGTTCTGTCATCTTGTGCTCTGTTGGGATCGTTAGATTTAGGGAAATGGATACATAAGTATGCTAAGAAACATAGTTTCTGTAAGTATGTGAAAGTAAACACAGCTTTGATCGATATGTTTGCGAAATGTGGTAGCTTGGATGATGCAGTGTCTATATTCGAAAAAATGAGGTATAAGGATACACAAGCTTGGTCAGCAATGATTGTAGCTTATGCGAATCATGGGAAAGCTGAGAAATCCATGTTGATGTTTGAGAGAATGAGGTCTGAAAATGTTCAGCCTGATGAGATCACATTTCTCGGTCTGTTAAACGCTTGCAGCCACACTGGTCGAGTGGAAGAAGGGAGAAAGTATTTCTCACAGATGGTTAGCAAATTTGGGATTGTTCCGAGTATTAAGCATTATGGTTCTATGGTAGATCTTCTTAGTAGAGCTGGAAATTTAGAAGATGCATATGAATTCATTGATAAGCTCCCAATTAGCCCAACACCAATGCTATGGAGGATTCTTTTAGCTGCTTGTAGCAGCCATAACAATTTGGACCTAGCTGAAAAGGTTAGCGAGAGGATCTTTGAGCTAGATGATTCACACGGTGGCGATTACGTGATTTTATCAAACCTATACGCGAGAAACAAGAAATGGGAATATGTAGATTCTTTAAGAAAGGTGATGAAAGATCGAAAGGCGGTTAAAGTTCCCGGTTGCAGCTCGATTGAGGTAAACAATGTGGTTCATGAGTTTTTCTCAGGGGATGGTGTGAAGTCTGCAACCACAAAGCTTCACAGAGCATTAGATGAAATGGTGAAAGAGCTAAAGCTTTCAGGTTATGTTCCTGATACATCAATGGTAGTTCACGCCAATATGAATGACCAAGAGAAGGAAATTACGCTTAGGTATCACAGCGAAAAGCTTGCGATAACGTTTGGATTATTGAATACTCCTCCGGGAACAACGATTCGGGTTGTGAAGAATCTTAGGGTGTGTAGAGATTGTCACAATGCAGCAAAGTTGATATCTCTTATATTTGGTAGGAAAGTTGTTCTTAGAGATGTTCAAAGGTTTCATCATTTTGAAGATGGAAAATGTTCTTGTGGGGATTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

603

Amino Acids

68.17

Weight (kDa)

7.24

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	92 - 140	1.6e-07	PPR repeat family
PPR_1	PF12854	191 - 222	1.1e-06	PPR repeat
PPR_2	PF13041	193 - 241	1.3e-12	PPR repeat family
PPR	PF01535	196 - 224	2.7e-08	PPR repeat
PPR_2	PF13041	295 - 342	1.6e-08	PPR repeat family
E_motif	PF20431	412 - 474	1.4e-15	E motif
DYW_deaminase	PF14432	510 - 603	4.6e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02980 AT5G66520
fragaria_vesca	FvH4_4g31300
malus_domestica	MD13G1071700.v1.1
prunus_persica	Prupe.1G275200_v2.0.a1
pyrus_communis	pycom13g06430
rosa_chinensis	RchiOBHm_Chr4g0439791
rosa_laevigata	RLG00000006238
rosa_multiflora	Rmu_sc0010226.1_g000006 Rmu_ssc0000029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00380690
rosa_rugosa	Rorug04G0321400
rosa_samantha	Rh4BG384700
rosa_wichuraiana	Rw4G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AccI	GTMKAC	1 cut(s)	445
AccII	CGCG	2 cut(s)	155, 1331
AciI	CCGC	1 cut(s)	1391
AclI	AACGTT	2 cut(s)	50, 1625
AclWI	GGATC	2 cut(s)	739, 1280
AcsI	RAATTY	5 cut(s)	141, 202, 1079, 1144, 1163
AdeI	CACNNNGTG	2 cut(s)	528, 1298
AfaI	GTAC	2 cut(s)	521, 674
AfiI	CCNNNNNNNGG	1 cut(s)	1582
AgsI	TTSAA	7 cut(s)	146, 173, 234, 679, 1639, 1760, 1778
AjuI	GAANNNNNNNTTGG	2 cut(s)	214, 246
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	3 cut(s)	222, 350, 405
AlwI	GGATC	2 cut(s)	739, 1280
ApeKI	GCWGC	5 cut(s)	1023, 1220, 1230, 1410, 1706
ApoI	RAATTY	5 cut(s)	141, 202, 1079, 1144, 1163
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	2 cut(s)	978, 1789
AspS9I	GGNCC	1 cut(s)	1246
AsuC2I	CCSGG	2 cut(s)	1404, 1650
AsuHPI	GGTGA	2 cut(s)	1384, 1519
AsuII	TTCGAA	2 cut(s)	65, 864
AvaII	GGWCC	1 cut(s)	1246
BaeI	ACNNNNGTAYC	2 cut(s)	746, 779
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	5 cut(s)	1035, 1207, 1242, 1422, 1718
BccI	CCATC	4 cut(s)	362, 1063, 1451, 1775
BceAI	ACGGC	1 cut(s)	562
BcgI	CGANNNNNNTGC	4 cut(s)	806, 840, 1598, 1632
BciVI	GTATCC	2 cut(s)	747, 877
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	1404, 1650
BcoDI	GTCTC	3 cut(s)	222, 350, 405
BfaI	CTAG	3 cut(s)	473, 1250, 1283
BfuI	GTATCC	2 cut(s)	747, 877
BglII	AGATCT	2 cut(s)	357, 1123
BisI	GCNGC	5 cut(s)	1024, 1221, 1231, 1411, 1707
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	5 cut(s)	1025, 1222, 1232, 1412, 1708
BmcAI	AGTACT	1 cut(s)	674
Bme1390I	CCNGG	2 cut(s)	1404, 1650
Bme18I	GGWCC	1 cut(s)	1246
BmgT120I	GGNCC	1 cut(s)	1246
BmrFI	CCNGG	2 cut(s)	1404, 1650
BmsI	GCATC	3 cut(s)	126, 838, 1144
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	1433, 1465
Bpu10I	CCTNAGC	1 cut(s)	1595
Bpu1102I	GCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	2 cut(s)	65, 864
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	1404, 1650
Bsa29I	ATCGAT	1 cut(s)	816
BsaAI	YACGTR	1 cut(s)	1309
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	1582
Bse1I	ACTGG	1 cut(s)	1036
Bse3DI	GCAATG	2 cut(s)	270, 909
BseCI	ATCGAT	1 cut(s)	816
BseGI	GGATG	2 cut(s)	850, 1462
BseLI	CCNNNNNNNGG	1 cut(s)	1582
BseMI	GCAATG	2 cut(s)	270, 909
BseMII	CTCAG	4 cut(s)	204, 516, 927, 1464
BseNI	ACTGG	1 cut(s)	1036
BseRI	GAGGAG	1 cut(s)	1635
BseXI	GCAGC	5 cut(s)	1035, 1207, 1242, 1422, 1718
BsgI	GTGCAG	2 cut(s)	193, 438
Bsh1236I	CGCG	2 cut(s)	155, 1331
BshVI	ATCGAT	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	724
BsiSI	CCGG	2 cut(s)	1404, 1649
BslI	CCNNNNNNNGG	1 cut(s)	1582
BsmAI	GTCTC	3 cut(s)	222, 350, 405
BsmBI	CGTCTC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	61
Bsp119I	TTCGAA	2 cut(s)	65, 864
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp1407I	TGTACA	1 cut(s)	519
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	1391
BspCNI	CTCAG	4 cut(s)	205, 517, 928, 1463
BspDI	ATCGAT	1 cut(s)	816
BspFNI	CGCG	2 cut(s)	155, 1331
BspHI	TCATGA	1 cut(s)	1438
BspPI	GGATC	2 cut(s)	739, 1280
BspT104I	TTCGAA	2 cut(s)	65, 864
BsrDI	GCAATG	2 cut(s)	270, 909
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	1036
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	79, 1298
Bst6I	CTCTTC	2 cut(s)	353, 408
BstAUI	TGTACA	1 cut(s)	519
BstBAI	YACGTR	1 cut(s)	1309
BstBI	TTCGAA	2 cut(s)	65, 864
BstC8I	GCNNGC	3 cut(s)	247, 1021, 1617
BstF5I	GGATG	2 cut(s)	850, 1462
BstFNI	CGCG	2 cut(s)	155, 1331
BstMAI	GTCTC	3 cut(s)	222, 350, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	899
BstSCI	CCNGG	2 cut(s)	1402, 1648
BstUI	CGCG	2 cut(s)	155, 1331
BstV1I	GCAGC	5 cut(s)	1035, 1207, 1242, 1422, 1718
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	3 cut(s)	357, 1123, 1272
BstXI	CCANNNNNNTGG	1 cut(s)	1203
BstYI	RGATCY	3 cut(s)	357, 1123, 1272
Bsu15I	ATCGAT	1 cut(s)	816
BsuI	GTATCC	2 cut(s)	747, 877
BsuTUI	ATCGAT	1 cut(s)	816
BtsCI	GGATG	2 cut(s)	850, 1462
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	5 cut(s)	75, 210, 522, 858, 1029
Cac8I	GCNNGC	3 cut(s)	247, 1021, 1617
CciI	TCATGA	1 cut(s)	1438
Cfr13I	GGNCC	1 cut(s)	1246
ClaI	ATCGAT	1 cut(s)	816
Csp6I	GTAC	2 cut(s)	520, 673
CviAII	CATG	3 cut(s)	926, 946, 1439
CviQI	GTAC	2 cut(s)	520, 673
DraIII	CACNNNGTG	2 cut(s)	528, 1298
Eam1104I	CTCTTC	2 cut(s)	353, 408
EarI	CTCTTC	2 cut(s)	353, 408
Eco32I	GATATC	2 cut(s)	9, 1719
Eco47I	GGWCC	1 cut(s)	1246
EcoRI	GAATTC	1 cut(s)	1163
EcoRV	GATATC	2 cut(s)	9, 1719
EcoT22I	ATGCAT	1 cut(s)	1159
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	3 cut(s)	929, 949, 1442
FalI	AAGNNNNNCTT	2 cut(s)	1731, 1763
FatI	CATG	3 cut(s)	925, 945, 1438
FauNDI	CATATG	2 cut(s)	241, 1159
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	5 cut(s)	1024, 1221, 1231, 1411, 1707
FokI	GGATG	2 cut(s)	857, 1469
Fsp4HI	GCNGC	5 cut(s)	1024, 1221, 1231, 1411, 1707
FspBI	CTAG	3 cut(s)	473, 1250, 1283
GluI	GCNGC	5 cut(s)	1024, 1221, 1231, 1411, 1707
HapII	CCGG	2 cut(s)	1404, 1649
Hin1II	CATG	3 cut(s)	929, 949, 1442
HindIII	AAGCTT	6 cut(s)	147, 411, 891, 1481, 1520, 1613
HpaII	CCGG	2 cut(s)	1404, 1649
HphI	GGTGA	2 cut(s)	1384, 1519
Hpy166II	GTNNAC	6 cut(s)	54, 446, 522, 802, 1426, 1558
Hpy188I	TCNGA	5 cut(s)	105, 271, 567, 973, 1095
Hpy188III	TCNNGA	4 cut(s)	322, 332, 1439, 1538
Hpy8I	GTNNAC	6 cut(s)	54, 446, 522, 802, 1426, 1558
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	193, 434, 1040, 1576
HpyCH4III	ACNGT	2 cut(s)	79, 1298
HpyCH4IV	ACGT	3 cut(s)	50, 1308, 1625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	899
HpySE526I	ACGT	3 cut(s)	50, 1308, 1625
Hsp92II	CATG	3 cut(s)	929, 949, 1442
Ksp22I	TGATCA	1 cut(s)	603
LmnI	GCTCC	1 cut(s)	1182
Lsp1109I	GCAGC	5 cut(s)	1035, 1207, 1242, 1422, 1718
LweI	GCATC	3 cut(s)	126, 838, 1144
MaeI	CTAG	3 cut(s)	473, 1250, 1283
MaeII	ACGT	3 cut(s)	50, 1308, 1625
MaeIII	GTNAC	1 cut(s)	1697
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	3 cut(s)	357, 1123, 1272
MhlI	GDGCHC	1 cut(s)	724
MlyI	GAGTC	2 cut(s)	224, 236
MmeI	TCCRAC	2 cut(s)	245, 527
Mph1103I	ATGCAT	1 cut(s)	1159
MroXI	GAANNNNTTC	2 cut(s)	978, 1789
MseI	TTAA	6 cut(s)	291, 513, 1013, 1101, 1364, 1395
MslI	CAYNNNNRTG	2 cut(s)	762, 950
MspI	CCGG	2 cut(s)	1404, 1649
MspR9I	CCNGG	2 cut(s)	1404, 1650
MunI	CAATTG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	61
MvnI	CGCG	2 cut(s)	155, 1331
MwoI	GCNNNNNNNGC	1 cut(s)	899
NciI	CCSGG	2 cut(s)	1404, 1650
NdeI	CATATG	2 cut(s)	241, 1159
NlaIII	CATG	3 cut(s)	929, 949, 1442
NmuCI	GTSAC	1 cut(s)	1697
NsiI	ATGCAT	1 cut(s)	1159
NspV	TTCGAA	2 cut(s)	65, 864
PagI	TCATGA	1 cut(s)	1438
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PctI	GAATGC	1 cut(s)	61
PdmI	GAANNNNTTC	2 cut(s)	978, 1789
PfeI	GAWTC	9 cut(s)	97, 325, 542, 922, 1210, 1289, 1358, 1660, 1675
PfoI	TCCNGGA	1 cut(s)	1648
PkrI	GCNGC	5 cut(s)	1025, 1222, 1232, 1412, 1708
PleI	GAGTC	2 cut(s)	223, 235
PpsI	GAGTC	2 cut(s)	223, 235
Ppu21I	YACGTR	1 cut(s)	1309
PshBI	ATTAAT	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	594
Psp1406I	AACGTT	2 cut(s)	50, 1625
PspPI	GGNCC	1 cut(s)	1246
PsuI	RGATCY	3 cut(s)	357, 1123, 1272
RsaI	GTAC	2 cut(s)	521, 674
RsaNI	GTAC	2 cut(s)	520, 673
RseI	CAYNNNNRTG	2 cut(s)	762, 950
SaqAI	TTAA	6 cut(s)	291, 513, 1013, 1101, 1364, 1395
SatI	GCNGC	5 cut(s)	1024, 1221, 1231, 1411, 1707
Sau96I	GGNCC	1 cut(s)	1246
ScaI	AGTACT	1 cut(s)	674
SchI	GAGTC	2 cut(s)	224, 236
ScrFI	CCNGG	2 cut(s)	1404, 1650
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	3 cut(s)	126, 838, 1144
SfuI	TTCGAA	2 cut(s)	65, 864
SinI	GGWCC	1 cut(s)	1246
SmiMI	CAYNNNNRTG	2 cut(s)	762, 950
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SsiI	CCGC	1 cut(s)	1391
SspMI	CTAG	3 cut(s)	473, 1250, 1283
StyD4I	CCNGG	2 cut(s)	1402, 1648
TaaI	ACNGT	2 cut(s)	79, 1298
TaiI	ACGT	3 cut(s)	53, 1311, 1628
TaqI	TCGA	9 cut(s)	65, 72, 258, 464, 816, 864, 1036, 1384, 1415
TaqII	GACCGA	2 cut(s)	646, 995
TatI	WGTACW	2 cut(s)	519, 672
TfiI	GAWTC	9 cut(s)	97, 325, 542, 922, 1210, 1289, 1358, 1660, 1675
Tru1I	TTAA	6 cut(s)	291, 513, 1013, 1101, 1364, 1395
Tru9I	TTAA	6 cut(s)	291, 513, 1013, 1101, 1364, 1395
TscAI	CASTG	5 cut(s)	82, 217, 529, 858, 1036
TseFI	GTSAC	1 cut(s)	1697
TseI	GCWGC	5 cut(s)	1023, 1220, 1230, 1410, 1706
Tsp45I	GTSAC	1 cut(s)	1697
TspDTI	ATGAA	8 cut(s)	482, 1156, 1176, 1391, 1427, 1515, 1583, 1757
TspGWI	ACGGA	2 cut(s)	239, 644
TspRI	CASTG	5 cut(s)	82, 217, 529, 858, 1036
VpaK11BI	GGWCC	1 cut(s)	1246
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	5 cut(s)	141, 202, 1079, 1144, 1163
XmiI	GTMKAC	1 cut(s)	445
XmnI	GAANNNNTTC	2 cut(s)	978, 1789
XspI	CTAG	3 cut(s)	473, 1250, 1283
ZrmI	AGTACT	1 cut(s)	674
Zsp2I	ATGCAT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.