FvH4_4g31300

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
30507171 .. 30508748
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31300.t1

Sequence Viewer

Length: 1578 bp
ATGGACTATGCGCACCAGCTCTTCGACCAAATTCCCCACCCGGACATTGTCGTCTTCAACACCATGGCGCGTGGTTACTCACGCTCCACCACCCCATTTCGCGCCATTTCACTCTTTTCACAGGTTCTGTCCTCAGGTATCTTCCCAGATGACTACACATTCCCGGCTCTTCTCAAGGCCTGTGCCGCCTGCAAAGCCTTAGAAGAAGGGAAGCAGTTGCACTGCTATGTTATCAAATGTGGAATGCAACTTAACATTTTTGTGTGTCCTGCTCTTATAAATATGTACACTGAGTGCAGTGCTGTGGATGTTGCTCGCCAGGTTTTTGATAAGATGCCGGAACCTTGTGTCGTCGTGCATAATGCTATGATCACAGGGTATGCTAGAAATAGTCGTCCCAATGAGGCATTGGCATTGTTTCGAGAGTTGCAAGCGAGTGGTCTTAAGCCTACTGATGTTACAATGCTGAGTGCTCTTTCGTCGTGCGCATTGTTAGGTGCATTAGACTTGGGGAAGTGGATACATGAGTATGTTAAGAAGAATAGGTTTGATAGATATGTTAAAGTGAACACTGCATTGATAGATATGTATTCTAAGTGTGGGAGCCTGGAGGATGCAGTGTCTGTGTTTGAGAACATGAGTGTGAAAGATACACAGGCTTGGTCTGCAATGATTGTGGCGTATGCAACTCATGGGAATGTTTCCAAAGCTATGTTGATGTTTGAAGAAATGAAGAGGGCACGAATTCGACCTGATGAGATCACATTTCTGGGTCTCTTATATGCGTGTAGTCATGCCGGATTGGTTGAGGAGGGTTGCAAGTATTTCTACAGCATGAGTGAGAAATATGGGATTATACCTAGGATTAAGCATTACGGTTGTATGGTGGATTTACTAGGTCGATCTGGACGTTTAAGGGAGGCTTACAAGTTCATAGATGAGCTACCAATTAAGCCTACGCCTATAATCTGGCGAACATTGTTATCTGCTTGTGCCAGTCATGGAGATGTCGACATTGGCTTGCGGGTGCTTGAGCAAATTTTTGAGTTGGATGACTCTCATGGTGGGGATTATGTGATCATATCTAACTTGTGTGCAAGAGCCGGAAGATGGGAGGATGTTGATTACTTGAGGAAACTGATGAAAGACAGAGGTGTTGTAAAGATTCCGGGGTGTAGCTCCATAGAAATGAAAAATGTGGTGCATGAATTCTTCTCTGGGGATGGCGAGCGTTCAGTTTCGAAAGTACTGCATCAGGCAGTTGATGAGTTGATTGAAGAATTAAAGCTGGCCGGATATGTTCCAGATACATCTCTAGTGTTTCATTCTGACATGGATGATAGAGATAGAGAGCTTTCTCTTAGATATCATAGTGAGAAATTAGCCATTACTTACGGGCTCTTAAACTCAGCTGCTGGGACAACAATACGTGTTGTGAAGAACCTTAGGGTATGTGGTGATTGCCACTCTGCTGCTAAATACATATCATTGATGTTTAATAGACAGATAGTTCTTAGAGATGTTCAACGATTCCATCATTTCAAAGACGGCAAGTGTTCCTGTGGGGACTATTGGTAG

Protein Analysis

526

Amino Acids

59.15

Weight (kDa)

6.78

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 14 - 62 3.1e-07 PPR repeat family
PPR_2 PF13041 115 - 162 8.2e-09 PPR repeat family
PPR PF01535 118 - 148 6.2e-06 PPR repeat
PPR_2 PF13041 217 - 264 2e-09 PPR repeat family
PPR PF01535 220 - 248 6.4e-06 PPR repeat
E_motif PF20431 334 - 396 8.9e-17 E motif
DYW_deaminase PF14432 432 - 525 4.2e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016684)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02980 AT5G66520
fragaria_vesca FvH4_4g31300
malus_domestica MD13G1071700.v1.1
prunus_persica Prupe.1G275200_v2.0.a1
pyrus_communis pycom13g06430
rosa_chinensis RchiOBHm_Chr4g0439791
rosa_laevigata RLG00000006238
rosa_multiflora Rmu_sc0010226.1_g000006 Rmu_ssc0000029.1_g000006
rosa_roxburghii Rroxscaffold_5G00380690
rosa_rugosa Rorug04G0321400
rosa_samantha Rh4BG384700
rosa_wichuraiana Rw4G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AasI GACNNNNNNGTC 1 cut(s) 50
Acc16I TGCGCA 2 cut(s) 12, 487
AccI GTMKAC 1 cut(s) 1011
AccII CGCG 2 cut(s) 70, 102
AciI CCGC 2 cut(s) 186, 1024
AcoI YGGCCR 1 cut(s) 1290
AcsI RAATTY 4 cut(s) 30, 744, 1038, 1208
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 2 cut(s) 287, 1248
AfiI CCNNNNNNNGG 1 cut(s) 1110
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 1429
AgsI TTSAA 5 cut(s) 58, 725, 1277, 1526, 1543
AjnI CCWGG 2 cut(s) 318, 606
AluBI AGCT 7 cut(s) 19, 710, 943, 1179, 1288, 1354, 1412
AluI AGCT 7 cut(s) 19, 710, 943, 1179, 1288, 1354, 1412
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 1 cut(s) 779
AlwNI CAGNNNCTG 3 cut(s) 127, 623, 1415
AoxI GGCC 2 cut(s) 177, 1290
ApeKI GCWGC 2 cut(s) 1412, 1472
ApoI RAATTY 4 cut(s) 30, 744, 1038, 1208
AspA2I CCTAGG 1 cut(s) 860
AspLEI GCGC 4 cut(s) 13, 70, 104, 488
AsuC2I CCSGG 3 cut(s) 41, 164, 1170
AsuHPI GGTGA 1 cut(s) 1469
AsuII TTCGAA 1 cut(s) 1241
AvrII CCTAGG 1 cut(s) 860
AxyI CCTNAGG 2 cut(s) 133, 1445
BaeGI GKGCMC 1 cut(s) 742
BaeI ACNNNNGTAYC 2 cut(s) 512, 545
BanII GRGCYC 1 cut(s) 1401
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 1399, 1459
BccI CCATC 3 cut(s) 1104, 1217, 1542
BceAI ACGGC 1 cut(s) 1564
BcgI CGANNNNNNTGC 2 cut(s) 1231, 1265
BciT130I CCWGG 2 cut(s) 320, 608
BciVI GTATCC 1 cut(s) 513
BclI TGATCA 2 cut(s) 369, 1077
BcnI CCSGG 3 cut(s) 41, 164, 1170
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 4 cut(s) 384, 861, 896, 1316
BfmI CTRYAG 1 cut(s) 829
BfrI CTTAAG 1 cut(s) 443
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 3 cut(s) 186, 1413, 1473
BlnI CCTAGG 1 cut(s) 860
BlsI GCNGC 3 cut(s) 187, 1414, 1474
BmcAI AGTACT 1 cut(s) 1248
Bme1390I CCNGG 5 cut(s) 41, 164, 320, 608, 1170
BmiI GGNNCC 2 cut(s) 342, 605
BmrFI CCNGG 5 cut(s) 41, 164, 320, 608, 1170
BmsI GCATC 3 cut(s) 324, 604, 1261
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 1241
BpuEI CTTGAG 3 cut(s) 158, 1052, 1150
BpuMI CCSGG 3 cut(s) 41, 164, 1170
BsaAI YACGTR 1 cut(s) 1430
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 63, 860, 1169
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 1110
Bse1I ACTGG 1 cut(s) 996
Bse21I CCTNAGG 2 cut(s) 133, 1445
Bse3DI GCAATG 1 cut(s) 675
BseBI CCWGG 2 cut(s) 320, 608
BseDI CCNNGG 3 cut(s) 63, 860, 1169
BseGI GGATG 6 cut(s) 313, 619, 1057, 1123, 1228, 1342
BseLI CCNNNNNNNGG 1 cut(s) 1110
BseMI GCAATG 1 cut(s) 675
BseMII CTCAG 4 cut(s) 147, 282, 458, 1422
BseNI ACTGG 1 cut(s) 996
BseRI GAGGAG 1 cut(s) 824
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 2 cut(s) 1399, 1459
BseYI CCCAGC 1 cut(s) 1415
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 2 cut(s) 70, 102
BshFI GGCC 2 cut(s) 179, 1292
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 7 cut(s) 41, 164, 338, 798, 1104, 1169, 1293
BslFI GGGAC 2 cut(s) 381, 1432
BslI CCNNNNNNNGG 1 cut(s) 1110
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 2 cut(s) 381, 1432
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 2 cut(s) 179, 1292
Bso31I GGTCTC 1 cut(s) 779
Bsp119I TTCGAA 1 cut(s) 1241
Bsp1286I GDGCHC 3 cut(s) 475, 742, 1401
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 4 cut(s) 369, 759, 902, 1077
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 186, 1024
BspANI GGCC 2 cut(s) 179, 1292
BspCNI CTCAG 4 cut(s) 146, 283, 459, 1421
BspFNI CGCG 2 cut(s) 70, 102
BspLI GGNNCC 2 cut(s) 342, 605
BspQI GCTCTTC 2 cut(s) 26, 174
BspT104I TTCGAA 1 cut(s) 1241
BspTI CTTAAG 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 779
BsrDI GCAATG 1 cut(s) 675
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 996
BssECI CCNNGG 3 cut(s) 63, 860, 1169
BssMI GATC 4 cut(s) 369, 759, 902, 1077
BssT1I CCWWGG 2 cut(s) 63, 860
Bst2UI CCWGG 2 cut(s) 320, 608
Bst4CI ACNGT 1 cut(s) 878
Bst6I CTCTTC 3 cut(s) 26, 174, 728
BstAFI CTTAAG 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 1430
BstBI TTCGAA 1 cut(s) 1241
BstC8I GCNNGC 6 cut(s) 190, 316, 432, 1022, 1229, 1290
BstDEI CTNAG 9 cut(s) 133, 199, 291, 467, 594, 1361, 1408, 1445, 1514
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 6 cut(s) 313, 619, 1057, 1123, 1228, 1342
BstFNI CGCG 2 cut(s) 70, 102
BstHHI GCGC 4 cut(s) 13, 70, 104, 488
BstKTI GATC 4 cut(s) 372, 762, 905, 1080
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 4 cut(s) 369, 759, 902, 1077
BstMWI GCNNNNNNNGC 3 cut(s) 185, 194, 665
BstNI CCWGG 2 cut(s) 320, 608
BstSCI CCNGG 5 cut(s) 39, 162, 318, 606, 1168
BstSFI CTRYAG 1 cut(s) 829
BstSLI GKGCMC 1 cut(s) 742
BstUI CGCG 2 cut(s) 70, 102
BstV1I GCAGC 2 cut(s) 1399, 1459
BstV2I GAAGAC 1 cut(s) 46
Bsu36I CCTNAGG 2 cut(s) 133, 1445
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 2 cut(s) 179, 1292
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 6 cut(s) 313, 619, 1057, 1123, 1228, 1342
BtsI GCAGTG 4 cut(s) 220, 304, 570, 624
BtsIMutI CAGTG 5 cut(s) 220, 288, 304, 570, 624
Cac8I GCNNGC 6 cut(s) 190, 316, 432, 1022, 1229, 1290
CaiI CAGNNNCTG 3 cut(s) 127, 623, 1415
CfoI GCGC 4 cut(s) 13, 70, 104, 488
Csp6I GTAC 2 cut(s) 286, 1247
CspCI CAANNNNNGTGG 2 cut(s) 657, 692
CviQI GTAC 2 cut(s) 286, 1247
DdeI CTNAG 9 cut(s) 133, 199, 291, 467, 594, 1361, 1408, 1445, 1514
DpnI GATC 4 cut(s) 371, 761, 904, 1079
DpnII GATC 4 cut(s) 369, 759, 902, 1077
DraIII CACNNNGTG 1 cut(s) 294
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 1290
Eam1104I CTCTTC 3 cut(s) 26, 174, 728
EarI CTCTTC 3 cut(s) 26, 174, 728
Eco130I CCWWGG 2 cut(s) 63, 860
Eco147I AGGCCT 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 1401
Eco31I GGTCTC 1 cut(s) 779
Eco32I GATATC 1 cut(s) 1367
Eco81I CCTNAGG 2 cut(s) 133, 1445
EcoRI GAATTC 2 cut(s) 744, 1208
EcoRII CCWGG 2 cut(s) 318, 606
EcoRV GATATC 1 cut(s) 1367
EcoT14I CCWWGG 2 cut(s) 63, 860
EcoT38I GRGCYC 1 cut(s) 1401
ErhI CCWWGG 2 cut(s) 63, 860
FalI AAGNNNNNCTT 2 cut(s) 907, 939
FaqI GGGAC 2 cut(s) 381, 1432
FauI CCCGC 1 cut(s) 1017
FbaI TGATCA 2 cut(s) 369, 1077
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 3 cut(s) 186, 1413, 1473
FokI GGATG 6 cut(s) 320, 626, 1064, 1130, 1235, 1349
FriOI GRGCYC 1 cut(s) 1401
Fsp4HI GCNGC 3 cut(s) 186, 1413, 1473
FspAI RTGCGCAY 2 cut(s) 12, 487
FspBI CTAG 4 cut(s) 384, 861, 896, 1316
FspI TGCGCA 2 cut(s) 12, 487
GlaI GCGC 4 cut(s) 12, 69, 103, 487
GluI GCNGC 3 cut(s) 186, 1413, 1473
GsaI CCCAGC 1 cut(s) 1419
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 2 cut(s) 179, 1292
HapII CCGG 7 cut(s) 41, 164, 338, 798, 1104, 1169, 1293
HhaI GCGC 4 cut(s) 13, 70, 104, 488
Hin6I GCGC 4 cut(s) 11, 68, 102, 486
HinP1I GCGC 4 cut(s) 11, 68, 102, 486
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HinfI GANTC 3 cut(s) 1055, 1165, 1530
HpaII CCGG 7 cut(s) 41, 164, 338, 798, 1104, 1169, 1293
HphI GGTGA 1 cut(s) 1469
Hpy166II GTNNAC 3 cut(s) 288, 568, 1012
Hpy188I TCNGA 1 cut(s) 1330
Hpy188III TCNNGA 3 cut(s) 422, 906, 1304
Hpy8I GTNNAC 3 cut(s) 288, 568, 1012
Hpy99I CGWCG 2 cut(s) 356, 484
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 878
HpyCH4IV ACGT 2 cut(s) 910, 1429
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 194, 665
HpyF3I CTNAG 9 cut(s) 133, 199, 291, 467, 594, 1361, 1408, 1445, 1514
HpySE526I ACGT 2 cut(s) 910, 1429
HspAI GCGC 4 cut(s) 11, 68, 102, 486
Ksp22I TGATCA 2 cut(s) 369, 1077
Kzo9I GATC 4 cut(s) 369, 759, 902, 1077
LguI GCTCTTC 2 cut(s) 26, 174
LmnI GCTCC 3 cut(s) 89, 603, 1184
Lsp1109I GCAGC 2 cut(s) 1399, 1459
LweI GCATC 3 cut(s) 324, 604, 1261
MaeI CTAG 4 cut(s) 384, 861, 896, 1316
MaeII ACGT 2 cut(s) 910, 1429
MaeIII GTNAC 2 cut(s) 74, 457
MalI GATC 4 cut(s) 371, 761, 904, 1079
MboI GATC 4 cut(s) 369, 759, 902, 1077
MhlI GDGCHC 3 cut(s) 475, 742, 1401
MluCI AATT 7 cut(s) 30, 744, 948, 1038, 1208, 1280, 1379
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 1 cut(s) 1029
MslI CAYNNNNRTG 7 cut(s) 225, 260, 528, 641, 696, 1005, 1187
MspA1I CMGCKG 1 cut(s) 1412
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 7 cut(s) 41, 164, 338, 798, 1104, 1169, 1293
MspR9I CCNGG 5 cut(s) 41, 164, 320, 608, 1170
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 2 cut(s) 320, 608
MvnI CGCG 2 cut(s) 70, 102
MwoI GCNNNNNNNGC 3 cut(s) 185, 194, 665
NciI CCSGG 3 cut(s) 41, 164, 1170
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 369, 759, 902, 1077
NlaIV GGNNCC 2 cut(s) 342, 605
NsbI TGCGCA 2 cut(s) 12, 487
NspV TTCGAA 1 cut(s) 1241
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 2 cut(s) 26, 174
PcsI WCGNNNNNNNCGW 1 cut(s) 907
PctI GAATGC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 1165, 1530
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 187, 1414, 1474
PleI GAGTC 1 cut(s) 1049
PpsI GAGTC 1 cut(s) 1049
Ppu21I YACGTR 1 cut(s) 1430
PsiI TTATAA 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 318, 606
PspFI CCCAGC 1 cut(s) 1415
PspGI CCWGG 2 cut(s) 318, 606
PspN4I GGNNCC 2 cut(s) 342, 605
PstNI CAGNNNCTG 3 cut(s) 127, 623, 1415
PsyI GACNNNGTC 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 2 cut(s) 287, 1248
RsaNI GTAC 2 cut(s) 286, 1247
RseI CAYNNNNRTG 7 cut(s) 225, 260, 528, 641, 696, 1005, 1187
SalI GTCGAC 1 cut(s) 1010
SapI GCTCTTC 2 cut(s) 26, 174
SatI GCNGC 3 cut(s) 186, 1413, 1473
Sau3AI GATC 4 cut(s) 369, 759, 902, 1077
ScaI AGTACT 1 cut(s) 1248
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 5 cut(s) 41, 164, 320, 608, 1170
SduI GDGCHC 3 cut(s) 475, 742, 1401
SfaNI GCATC 3 cut(s) 324, 604, 1261
SfcI CTRYAG 1 cut(s) 829
SfuI TTCGAA 1 cut(s) 1241
SmiMI CAYNNNNRTG 7 cut(s) 225, 260, 528, 641, 696, 1005, 1187
SmlI CTYRAG 4 cut(s) 173, 443, 1031, 1129
SmoI CTYRAG 4 cut(s) 173, 443, 1031, 1129
Sse9I AATT 7 cut(s) 30, 744, 948, 1038, 1208, 1280, 1379
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 2 cut(s) 186, 1024
SspMI CTAG 4 cut(s) 384, 861, 896, 1316
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 5 cut(s) 39, 162, 318, 606, 1168
StyI CCWWGG 2 cut(s) 63, 860
TaaI ACNGT 1 cut(s) 878
TaiI ACGT 2 cut(s) 913, 1432
TaqI TCGA 6 cut(s) 24, 421, 748, 901, 1011, 1241
TasI AATT 7 cut(s) 30, 744, 948, 1038, 1208, 1280, 1379
TatI WGTACW 2 cut(s) 285, 1246
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 1165, 1530
TscAI CASTG 5 cut(s) 227, 295, 304, 577, 624
TseI GCWGC 2 cut(s) 1412, 1472
TspDTI ATGAA 6 cut(s) 746, 922, 1157, 1205, 1221, 1313
TspRI CASTG 5 cut(s) 227, 295, 304, 577, 624
Tth111I GACNNNGTC 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 443
XapI RAATTY 4 cut(s) 30, 744, 1038, 1208
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmaJI CCTAGG 1 cut(s) 860
XmiI GTMKAC 1 cut(s) 1011
XspI CTAG 4 cut(s) 384, 861, 896, 1316
ZrmI AGTACT 1 cut(s) 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.