Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016684

Physical Location & Seq

Genomic Coordinates Forward (+)

5462518 .. 5465953

Gene Structure 3436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGGCATCACTGGCTGTCCAGATAACCCCCGTCTCTCACCCAAAAGCTCACACTCACTCCCCAATCTCTCTCATCCCTAAATGCACCTCTCTTACAGAACTCCAGCAAATCCACGCCTTGTCCATCAAAACCCATCTCCAATATGACTTCTCTGTCCTCGCCAAGCTCATCAACTCCTGCACACTCAACCCAATGAGACACTCCATGGACTATGCCCACCACCTGTTCCACCAAATTCCCCACCCGGACATTGTCGTCTTCAACACCATGGCACGTGGTTACTCACGCTCCGATACCCCATTTCGAGCTATTTCACTCTTTTCCCAGGTTCTATCCTCAGGTCTCTTCCCAGATGACTACACGTTCCCGGCTCTTCTCAAGGCTTGCGCCGGCTCTAAAGCCTTAGAAGAAGGGAAGCAGTTGCATTGCTATGTTATCAAATATGGAATGCAACTTAACATATTTGTGTGCCCTGCTCTTATAAATATGTACACTGAGTGCAGTGATGTAGATGCAGCTCGCCGGGTTTTTGATAAGATACTGGACCCTTGTGTTGTTGTGCATAATGCTATGATCACAGGGTATGCTAGAAACAGTCGGCCCAATGAGGCATTGGCATTGTTTCGAGAGTTGCAAGCGAGTGGTCTTAAGCCAACCGATGTTACTATGCTTAGTGCTCTTTCGTCGTGCGCTTTGTTAGGTGCATTGGACTTGGGGAAGTGGATTCATGAGTATGTTAAGAAGAATAGGTTTGATAGATATGTTAAAGTGAACACTGCATTAATAGATATGTATTCAAAGTGTGGAAGCCTGAAGGATGCAGTGTCTGTGTTTGAGAACATGAGTGTGAAAGATACACAGGCTTGGTCTGCAATGATTGTGGCGTATGCAACACATGGGAATGTTTCCAAAGCTATATCGATGTTTGAAGAGATGAAGAAGGCACGAATTCGACCTGATGAGATCACATTTCTGGGTCTCTTATATGCGTGTAGTCATGCTGGATTAGTTGAGGAGGGTTGCAAGTATTTCTACAGCATGAGTGAGAACTATGGGATTATACCCAGGATTAAGCATTATGGGTGTGTGGTGGATTTGCTAGGTCGGGCTGGACGTTTAGGGGAGGCTTACAAGTTCATAGTTGAGCTACCAATTAAGCCTACGCCTATAATCTGGCGAACATTGTTATCTGCTTGTTGCAGTCATGGTGATGTAGACATGGGGATGCGGGTGCTTGAGCGCATTTTTGAGTTAGATGACTCTCATGGTGGGGATTATGTGATCATATCTAACTTGTGTGCAAGAGCAGGAAGATGGGAGGATGTTGATTACTTGAGGAAACTGATGAAAGACAGAGGCATTGTAAAGATTCCTGGGTGTAGCGCCATACAGATGAACAATGTAGTGCATGAATTCTTCTCTGGGGATGGCGAGCGTTCTGTTTCCAAAGTACTGCATCTGGCAGTTGATGAGTTGATTGAAGAATTAAAGCTGGCCGGATATGTTCCAGATACTTCTTTAGTATTTCATTCTGACATGGATGATAGAGATAGAGAGCTTTCTCTTAGATATCATAGTGAGAAATTAGCCATTACTTATGGGCTCTTAAACACAGCTGCTGGGACAACAATTCGTGTTGTGAAGAACCTTAGGGTATGTGGGGATTGCCACTCTGCTGCTAAATACATATCACTGATCTTTAATAGACAAATAGTTCTTAGAGATGTTCAACGGTTCCATCATTTCAGAGACGGCAAGTGTTCTTGTGGAGACTATTGGTTGGTTAGCATGGTTAGTCTTGGGCAAAACCTTTCAGTCCATCGTCATGACAATGAGACATCAATGGTTAACTTCCGGATCCCTACTTTAACTTCCAACTCCAAGGCTGAGGTGTCAGGGATAATCGACGATTTGCAAAAATATTTACCATTGCTGGCCTGCCCGAGCAGCAACGGTACGCAGCTTTGGGCGGAAGAATGGGAAATACATCGCACTTGCTCGCAGTCAGCTGTCCTTGATCAGTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

677

Amino Acids

75.85

Weight (kDa)

7.13

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 130	4.4e-07	PPR repeat family
PPR_2	PF13041	183 - 230	1.1e-08	PPR repeat family
PPR	PF01535	186 - 216	8.5e-06	PPR repeat
PPR_2	PF13041	285 - 332	2.5e-10	PPR repeat family
PPR	PF01535	288 - 316	2.3e-06	PPR repeat
E_motif	PF20431	402 - 464	4.7e-17	E motif
DYW_deaminase	PF14432	500 - 593	1.4e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02980 AT5G66520
fragaria_vesca	FvH4_4g31300
malus_domestica	MD13G1071700.v1.1
prunus_persica	Prupe.1G275200_v2.0.a1
pyrus_communis	pycom13g06430
rosa_chinensis	RchiOBHm_Chr4g0439791
rosa_laevigata	RLG00000006238
rosa_multiflora	Rmu_sc0010226.1_g000006 Rmu_ssc0000029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00380690
rosa_rugosa	Rorug04G0321400
rosa_samantha	Rh4BG384700
rosa_wichuraiana	Rw4G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AasI	GACNNNNNNGTC	2 cut(s)	152, 254
AccI	GTMKAC	1 cut(s)	1215
AccIII	TCCGGA	1 cut(s)	1854
AciI	CCGC	2 cut(s)	1228, 1970
AclWI	GGATC	2 cut(s)	1852, 1865
AcoI	YGGCCR	1 cut(s)	1494
AcsI	RAATTY	3 cut(s)	234, 948, 1412
AcuI	CTGAAG	1 cut(s)	833
AcvI	CACGTG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	491, 1452, 1957
AflII	CTTAAG	1 cut(s)	647
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	5 cut(s)	262, 798, 929, 1481, 1730
AjnI	CCWGG	3 cut(s)	324, 1064, 1372
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	7 cut(s)	37, 190, 347, 983, 1743, 1764, 1829
AlwI	GGATC	2 cut(s)	1852, 1865
AlwNI	CAGNNNCTG	2 cut(s)	827, 1619
Ama87I	CYCGRG	1 cut(s)	1942
Aor13HI	TCCGGA	1 cut(s)	1854
AoxI	GGCC	3 cut(s)	599, 1494, 1935
ApeKI	GCWGC	5 cut(s)	515, 1616, 1676, 1947, 1960
ApoI	RAATTY	3 cut(s)	234, 948, 1412
AseI	ATTAAT	1 cut(s)	782
AspLEI	GCGC	4 cut(s)	389, 692, 1242, 1385
AspS9I	GGNCC	2 cut(s)	544, 600
AsuC2I	CCSGG	3 cut(s)	245, 368, 524
AsuHPI	GGTGA	2 cut(s)	29, 1220
AvaI	CYCGRG	1 cut(s)	1942
AvaII	GGWCC	1 cut(s)	544
AxyI	CCTNAGG	2 cut(s)	337, 1649
BaeGI	GKGCMC	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	1857
BanII	GRGCYC	1 cut(s)	1605
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	679
BbvCI	CCTCAGC	1 cut(s)	1887
BbvI	GCAGC	5 cut(s)	527, 1603, 1663, 1959, 1972
BccI	CCATC	6 cut(s)	131, 141, 1308, 1421, 1746, 1827
BceAI	ACGGC	1 cut(s)	1768
BciT130I	CCWGG	3 cut(s)	326, 1066, 1374
BclI	TGATCA	3 cut(s)	573, 1281, 2017
BcnI	CCSGG	3 cut(s)	245, 368, 524
BcoDI	GTCTC	7 cut(s)	37, 190, 347, 983, 1743, 1764, 1829
BfaI	CTAG	2 cut(s)	588, 1100
BfmI	CTRYAG	1 cut(s)	1033
BfoI	RGCGCY	1 cut(s)	1386
BfrI	CTTAAG	1 cut(s)	647
BisI	GCNGC	5 cut(s)	516, 1617, 1677, 1948, 1961
BlsI	GCNGC	5 cut(s)	517, 1618, 1678, 1949, 1962
BmcAI	AGTACT	1 cut(s)	1452
Bme1390I	CCNGG	6 cut(s)	245, 326, 368, 524, 1066, 1374
Bme18I	GGWCC	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	1942
BmgT120I	GGNCC	2 cut(s)	544, 600
BmiI	GGNNCC	3 cut(s)	546, 1736, 1859
BmrFI	CCNGG	6 cut(s)	245, 326, 368, 524, 1066, 1374
BmsI	GCATC	5 cut(s)	14, 502, 808, 1215, 1465
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	1887
BpuEI	CTTGAG	3 cut(s)	362, 1256, 1354
BpuMI	CCSGG	3 cut(s)	245, 368, 524
Bsa29I	ATCGAT	1 cut(s)	920
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	2 cut(s)	347, 983
BsaJI	CCNNGG	6 cut(s)	204, 267, 324, 1064, 1373, 1881
BsaWI	WCCGGW	1 cut(s)	1854
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 272, 302
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	15, 546
Bse21I	CCTNAGG	2 cut(s)	337, 1649
Bse3DI	GCAATG	3 cut(s)	424, 879, 1928
BseAI	TCCGGA	1 cut(s)	1854
BseBI	CCWGG	3 cut(s)	326, 1066, 1374
BseCI	ATCGAT	1 cut(s)	920
BseDI	CCNNGG	6 cut(s)	204, 267, 324, 1064, 1373, 1881
BseGI	GGATG	6 cut(s)	72, 823, 1230, 1327, 1432, 1546
BseMI	GCAATG	3 cut(s)	424, 879, 1928
BseMII	CTCAG	3 cut(s)	351, 486, 1878
BseNI	ACTGG	2 cut(s)	15, 546
BseRI	GAGGAG	1 cut(s)	1028
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	5 cut(s)	527, 1603, 1663, 1959, 1972
BseYI	CCCAGC	1 cut(s)	1619
BsgI	GTGCAG	2 cut(s)	163, 520
BshFI	GGCC	3 cut(s)	601, 1496, 1937
BshVI	ATCGAT	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	1942
BsiSI	CCGG	6 cut(s)	245, 368, 390, 523, 1497, 1855
BslFI	GGGAC	1 cut(s)	1636
BsmAI	GTCTC	7 cut(s)	37, 190, 347, 983, 1743, 1764, 1829
BsmBI	CGTCTC	2 cut(s)	37, 1743
BsmFI	GGGAC	1 cut(s)	1636
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	601, 1496, 1937
Bso31I	GGTCTC	2 cut(s)	347, 983
BsoBI	CYCGRG	1 cut(s)	1942
Bsp1286I	GDGCHC	3 cut(s)	473, 679, 1605
Bsp13I	TCCGGA	1 cut(s)	1854
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
Bsp19I	CCATGG	2 cut(s)	204, 267
BspACI	CCGC	2 cut(s)	1228, 1970
BspANI	GGCC	3 cut(s)	601, 1496, 1937
BspCNI	CTCAG	3 cut(s)	350, 487, 1879
BspDI	ATCGAT	1 cut(s)	920
BspEI	TCCGGA	1 cut(s)	1854
BspHI	TCATGA	2 cut(s)	727, 1825
BspLI	GGNNCC	3 cut(s)	546, 1736, 1859
BspPI	GGATC	2 cut(s)	1852, 1865
BspQI	GCTCTTC	1 cut(s)	378
BspTI	CTTAAG	1 cut(s)	647
BspTNI	GGTCTC	2 cut(s)	347, 983
BsrDI	GCAATG	3 cut(s)	424, 879, 1928
BsrFI	RCCGGY	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	15, 546
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	6 cut(s)	204, 267, 324, 1064, 1373, 1881
BssMI	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
BssT1I	CCWWGG	3 cut(s)	204, 267, 1881
Bst2UI	CCWGG	3 cut(s)	326, 1066, 1374
Bst4CI	ACNGT	3 cut(s)	596, 1734, 1955
Bst6I	CTCTTC	3 cut(s)	350, 378, 924
BstAFI	CTTAAG	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	9 cut(s)	385, 391, 520, 636, 1433, 1494, 1935, 1939, 2000
BstDEI	CTNAG	8 cut(s)	337, 403, 495, 671, 1565, 1649, 1718, 1887
BstDSI	CCRYGG	2 cut(s)	204, 267
BstF5I	GGATG	6 cut(s)	72, 823, 1230, 1327, 1432, 1546
BstH2I	RGCGCY	1 cut(s)	1386
BstHHI	GCGC	4 cut(s)	389, 692, 1242, 1385
BstKTI	GATC	6 cut(s)	576, 966, 1284, 1698, 1860, 2020
BstMAI	GTCTC	7 cut(s)	37, 190, 347, 983, 1743, 1764, 1829
BstMBI	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 869, 1947
BstNI	CCWGG	3 cut(s)	326, 1066, 1374
BstSCI	CCNGG	6 cut(s)	243, 324, 366, 522, 1064, 1372
BstSFI	CTRYAG	1 cut(s)	1033
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	5 cut(s)	527, 1603, 1663, 1959, 1972
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	1857
BstYI	RGATCY	1 cut(s)	1857
Bsu15I	ATCGAT	1 cut(s)	920
Bsu36I	CCTNAGG	2 cut(s)	337, 1649
BsuRI	GGCC	3 cut(s)	601, 1496, 1937
BsuTUI	ATCGAT	1 cut(s)	920
BtgI	CCRYGG	2 cut(s)	204, 267
BtgZI	GCGATG	1 cut(s)	1973
BtsCI	GGATG	6 cut(s)	72, 823, 1230, 1327, 1432, 1546
BtsI	GCAGTG	3 cut(s)	508, 774, 828
BtsIMutI	CAGTG	6 cut(s)	8, 492, 508, 774, 828, 1691
Cac8I	GCNNGC	9 cut(s)	385, 391, 520, 636, 1433, 1494, 1935, 1939, 2000
CaiI	CAGNNNCTG	2 cut(s)	827, 1619
CciI	TCATGA	2 cut(s)	727, 1825
CfoI	GCGC	4 cut(s)	389, 692, 1242, 1385
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	544, 600
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	3 cut(s)	490, 1451, 1956
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviQI	GTAC	3 cut(s)	490, 1451, 1956
DdeI	CTNAG	8 cut(s)	337, 403, 495, 671, 1565, 1649, 1718, 1887
DpnI	GATC	6 cut(s)	575, 965, 1283, 1697, 1859, 2019
DpnII	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
DraIII	CACNNNGTG	1 cut(s)	498
DrdI	GACNNNNNNGTC	2 cut(s)	152, 254
DseDI	GACNNNNNNGTC	2 cut(s)	152, 254
EaeI	YGGCCR	1 cut(s)	1494
Eam1104I	CTCTTC	3 cut(s)	350, 378, 924
EarI	CTCTTC	3 cut(s)	350, 378, 924
EciI	GGCGGA	1 cut(s)	1985
Eco130I	CCWWGG	3 cut(s)	204, 267, 1881
Eco24I	GRGCYC	1 cut(s)	1605
Eco31I	GGTCTC	2 cut(s)	347, 983
Eco32I	GATATC	1 cut(s)	1571
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	833
Eco72I	CACGTG	1 cut(s)	275
Eco81I	CCTNAGG	2 cut(s)	337, 1649
Eco88I	CYCGRG	1 cut(s)	1942
EcoRI	GAATTC	2 cut(s)	948, 1412
EcoRII	CCWGG	3 cut(s)	324, 1064, 1372
EcoRV	GATATC	1 cut(s)	1571
EcoT14I	CCWWGG	3 cut(s)	204, 267, 1881
EcoT38I	GRGCYC	1 cut(s)	1605
ErhI	CCWWGG	3 cut(s)	204, 267, 1881
Esp3I	CGTCTC	2 cut(s)	37, 1743
FaqI	GGGAC	1 cut(s)	1636
FauI	CCCGC	1 cut(s)	1221
FbaI	TGATCA	3 cut(s)	573, 1281, 2017
FblI	GTMKAC	1 cut(s)	1215
Fnu4HI	GCNGC	5 cut(s)	516, 1617, 1677, 1948, 1961
FokI	GGATG	6 cut(s)	59, 830, 1237, 1334, 1439, 1553
FriOI	GRGCYC	1 cut(s)	1605
Fsp4HI	GCNGC	5 cut(s)	516, 1617, 1677, 1948, 1961
FspBI	CTAG	2 cut(s)	588, 1100
GlaI	GCGC	4 cut(s)	388, 691, 1241, 1384
GluI	GCNGC	5 cut(s)	516, 1617, 1677, 1948, 1961
GsaI	CCCAGC	1 cut(s)	1623
GsuI	CTGGAG	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	1386
HaeIII	GGCC	3 cut(s)	601, 1496, 1937
HapII	CCGG	6 cut(s)	245, 368, 390, 523, 1497, 1855
HhaI	GCGC	4 cut(s)	389, 692, 1242, 1385
Hin6I	GCGC	4 cut(s)	387, 690, 1240, 1383
HinP1I	GCGC	4 cut(s)	387, 690, 1240, 1383
HincII	GTYRAC	1 cut(s)	1849
HindII	GTYRAC	1 cut(s)	1849
HinfI	GANTC	3 cut(s)	724, 1259, 1369
HpaI	GTTAAC	1 cut(s)	1849
HpaII	CCGG	6 cut(s)	245, 368, 390, 523, 1497, 1855
HphI	GGTGA	2 cut(s)	29, 1220
Hpy166II	GTNNAC	4 cut(s)	492, 772, 1216, 1849
Hpy188I	TCNGA	3 cut(s)	292, 1534, 1748
Hpy188III	TCNNGA	6 cut(s)	19, 626, 728, 1508, 1826, 1855
Hpy8I	GTNNAC	4 cut(s)	492, 772, 1216, 1849
Hpy99I	CGWCG	2 cut(s)	688, 1910
HpyAV	CCTTC	3 cut(s)	404, 808, 934
HpyCH4III	ACNGT	3 cut(s)	596, 1734, 1955
HpyCH4IV	ACGT	3 cut(s)	274, 362, 1114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 869, 1947
HpyF3I	CTNAG	8 cut(s)	337, 403, 495, 671, 1565, 1649, 1718, 1887
HpySE526I	ACGT	3 cut(s)	274, 362, 1114
HspAI	GCGC	4 cut(s)	387, 690, 1240, 1383
Kpn2I	TCCGGA	1 cut(s)	1854
KroI	GCCGGC	1 cut(s)	389
KroNI	GCCGGC	1 cut(s)	391
Ksp22I	TGATCA	3 cut(s)	573, 1281, 2017
KspAI	GTTAAC	1 cut(s)	1849
Kzo9I	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	5 cut(s)	527, 1603, 1663, 1959, 1972
LweI	GCATC	5 cut(s)	14, 502, 808, 1215, 1465
MaeI	CTAG	2 cut(s)	588, 1100
MaeII	ACGT	3 cut(s)	274, 362, 1114
MaeIII	GTNAC	2 cut(s)	278, 661
MalI	GATC	6 cut(s)	575, 965, 1283, 1697, 1859, 2019
MboI	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
MflI	RGATCY	1 cut(s)	1857
MhlI	GDGCHC	3 cut(s)	473, 679, 1605
MluCI	AATT	8 cut(s)	234, 948, 1152, 1412, 1484, 1583, 1629, 2026
MlyI	GAGTC	1 cut(s)	1253
MmeI	TCCRAC	1 cut(s)	1899
MroI	TCCGGA	1 cut(s)	1854
MroNI	GCCGGC	1 cut(s)	389
MspA1I	CMGCKG	2 cut(s)	1616, 2009
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	6 cut(s)	245, 368, 390, 523, 1497, 1855
MspR9I	CCNGG	6 cut(s)	245, 326, 368, 524, 1066, 1374
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	3 cut(s)	326, 1066, 1374
MwoI	GCNNNNNNNGC	3 cut(s)	11, 869, 1947
NaeI	GCCGGC	1 cut(s)	391
NciI	CCSGG	3 cut(s)	245, 368, 524
NcoI	CCATGG	2 cut(s)	204, 267
NdeII	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
NgoMIV	GCCGGC	1 cut(s)	389
NlaIV	GGNNCC	3 cut(s)	546, 1736, 1859
PagI	TCATGA	2 cut(s)	727, 1825
PciSI	GCTCTTC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	1111
PctI	GAATGC	1 cut(s)	453
PdiI	GCCGGC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	724, 1369
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	517, 1618, 1678, 1949, 1962
PleI	GAGTC	1 cut(s)	1253
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	1253
Ppu21I	YACGTR	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	782
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	324, 1064, 1372
PspCI	CACGTG	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	1619
PspGI	CCWGG	3 cut(s)	324, 1064, 1372
PspN4I	GGNNCC	3 cut(s)	546, 1736, 1859
PspPI	GGNCC	2 cut(s)	544, 600
PstNI	CAGNNNCTG	2 cut(s)	827, 1619
PsuI	RGATCY	1 cut(s)	1857
PsyI	GACNNNGTC	1 cut(s)	251
PvuII	CAGCTG	2 cut(s)	1616, 2009
RsaI	GTAC	3 cut(s)	491, 1452, 1957
RsaNI	GTAC	3 cut(s)	490, 1451, 1956
SapI	GCTCTTC	1 cut(s)	378
SatI	GCNGC	5 cut(s)	516, 1617, 1677, 1948, 1961
Sau3AI	GATC	6 cut(s)	573, 963, 1281, 1695, 1857, 2017
Sau96I	GGNCC	2 cut(s)	544, 600
ScaI	AGTACT	1 cut(s)	1452
SchI	GAGTC	1 cut(s)	1253
ScrFI	CCNGG	6 cut(s)	245, 326, 368, 524, 1066, 1374
SduI	GDGCHC	3 cut(s)	473, 679, 1605
SfaNI	GCATC	5 cut(s)	14, 502, 808, 1215, 1465
SfcI	CTRYAG	1 cut(s)	1033
SinI	GGWCC	1 cut(s)	544
SmlI	CTYRAG	4 cut(s)	377, 647, 1235, 1333
SmoI	CTYRAG	4 cut(s)	377, 647, 1235, 1333
Sse9I	AATT	8 cut(s)	234, 948, 1152, 1412, 1484, 1583, 1629, 2026
SsiI	CCGC	2 cut(s)	1228, 1970
SspI	AATATT	1 cut(s)	1922
SspMI	CTAG	2 cut(s)	588, 1100
StyD4I	CCNGG	6 cut(s)	243, 324, 366, 522, 1064, 1372
StyI	CCWWGG	3 cut(s)	204, 267, 1881
TaaI	ACNGT	3 cut(s)	596, 1734, 1955
TaiI	ACGT	3 cut(s)	277, 365, 1117
TaqI	TCGA	5 cut(s)	304, 625, 920, 952, 1905
TasI	AATT	8 cut(s)	234, 948, 1152, 1412, 1484, 1583, 1629, 2026
TatI	WGTACW	2 cut(s)	489, 1450
TfiI	GAWTC	2 cut(s)	724, 1369
TscAI	CASTG	6 cut(s)	15, 499, 508, 781, 828, 1698
TseI	GCWGC	5 cut(s)	515, 1616, 1676, 1947, 1960
TspDTI	ATGAA	7 cut(s)	716, 950, 1126, 1361, 1409, 1425, 1517
TspRI	CASTG	6 cut(s)	15, 499, 508, 781, 828, 1698
Tth111I	GACNNNGTC	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	544
VspI	ATTAAT	1 cut(s)	782
XapI	RAATTY	3 cut(s)	234, 948, 1412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmiI	GTMKAC	1 cut(s)	1215
XspI	CTAG	2 cut(s)	588, 1100
ZrmI	AGTACT	1 cut(s)	1452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.