Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G02980 AT5G66520 |
| fragaria_vesca | FvH4_4g31300 |
| malus_domestica | MD13G1071700.v1.1 |
| prunus_persica | Prupe.1G275200_v2.0.a1 |
| pyrus_communis | pycom13g06430 |
| rosa_chinensis | RchiOBHm_Chr4g0439791 |
| rosa_laevigata | RLG00000006238 |
| rosa_multiflora | Rmu_sc0010226.1_g000006 Rmu_ssc0000029.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00380690 |
| rosa_rugosa | Rorug04G0321400 |
| rosa_samantha | Rh4BG384700 |
| rosa_wichuraiana | Rw4G031820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 152, 254 |
| Acc65I | GGTACC | 1 cut(s) | 197 |
| AccB1I | GGYRCC | 1 cut(s) | 197 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1173 |
| AccI | GTMKAC | 1 cut(s) | 1215 |
| AccII | CGCG | 1 cut(s) | 276 |
| AciI | CCGC | 7 cut(s) | 274, 276, 515, 821, 1197, 1228, 1307 |
| AclWI | GGATC | 1 cut(s) | 1335 |
| AcoI | YGGCCR | 2 cut(s) | 599, 1587 |
| AcsI | RAATTY | 5 cut(s) | 234, 948, 1291, 1368, 1412 |
| AdeI | CACNNNGTG | 1 cut(s) | 498 |
| AfaI | GTAC | 4 cut(s) | 199, 491, 561, 1452 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1173 |
| AflII | CTTAAG | 2 cut(s) | 647, 1333 |
| AflIII | ACRYGT | 1 cut(s) | 486 |
| AgsI | TTSAA | 6 cut(s) | 262, 836, 1446, 1481, 1730, 1747 |
| AjiI | CACGTC | 1 cut(s) | 87 |
| AjnI | CCWGG | 1 cut(s) | 810 |
| AluBI | AGCT | 6 cut(s) | 100, 166, 336, 393, 1383, 1492 |
| AluI | AGCT | 6 cut(s) | 100, 166, 336, 393, 1383, 1492 |
| Alw21I | GWGCWC | 5 cut(s) | 86, 102, 338, 679, 1763 |
| Alw26I | GTCTC | 3 cut(s) | 70, 983, 1344 |
| Alw44I | GTGCAC | 1 cut(s) | 82 |
| AlwI | GGATC | 1 cut(s) | 1335 |
| Ama87I | CYCGRG | 1 cut(s) | 1619 |
| AoxI | GGCC | 3 cut(s) | 270, 599, 1587 |
| ApaLI | GTGCAC | 1 cut(s) | 82 |
| ApeKI | GCWGC | 2 cut(s) | 5, 1676 |
| ApoI | RAATTY | 5 cut(s) | 234, 948, 1291, 1368, 1412 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 347, 379 |
| Asp718I | GGTACC | 1 cut(s) | 197 |
| AspLEI | GCGC | 1 cut(s) | 389 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AsuC2I | CCSGG | 5 cut(s) | 524, 1065, 1374, 1620, 1621 |
| AsuHPI | GGTGA | 6 cut(s) | 29, 151, 233, 443, 1220, 1405 |
| AvaI | CYCGRG | 1 cut(s) | 1619 |
| AxyI | CCTNAGG | 1 cut(s) | 1649 |
| BaeGI | GKGCMC | 2 cut(s) | 86, 473 |
| BalI | TGGCCA | 1 cut(s) | 1589 |
| BanI | GGYRCC | 1 cut(s) | 197 |
| BanII | GRGCYC | 4 cut(s) | 29, 102, 338, 1605 |
| BbsI | GAAGAC | 2 cut(s) | 250, 843 |
| Bbv12I | GWGCWC | 5 cut(s) | 86, 102, 338, 679, 1763 |
| BbvI | GCAGC | 2 cut(s) | 17, 1663 |
| BccI | CCATC | 3 cut(s) | 131, 141, 1746 |
| BciT130I | CCWGG | 1 cut(s) | 812 |
| BciVI | GTATCC | 1 cut(s) | 717 |
| BclI | TGATCA | 2 cut(s) | 573, 1281 |
| BcnI | CCSGG | 5 cut(s) | 524, 1065, 1374, 1620, 1621 |
| BcoDI | GTCTC | 3 cut(s) | 70, 983, 1344 |
| BfaI | CTAG | 2 cut(s) | 1100, 1520 |
| BfmI | CTRYAG | 3 cut(s) | 991, 1033, 1378 |
| BfrI | CTTAAG | 2 cut(s) | 647, 1333 |
| BfuI | GTATCC | 1 cut(s) | 717 |
| BglII | AGATCT | 1 cut(s) | 340 |
| BisI | GCNGC | 4 cut(s) | 6, 277, 516, 1677 |
| BlsI | GCNGC | 4 cut(s) | 7, 278, 517, 1678 |
| BmcAI | AGTACT | 1 cut(s) | 1452 |
| Bme1390I | CCNGG | 6 cut(s) | 524, 812, 1065, 1374, 1620, 1621 |
| BmeT110I | CYCGRG | 1 cut(s) | 1619 |
| BmgBI | CACGTC | 1 cut(s) | 87 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmiI | GGNNCC | 1 cut(s) | 199 |
| BmrFI | CCNGG | 6 cut(s) | 524, 812, 1065, 1374, 1620, 1621 |
| BmrI | ACTGGG | 1 cut(s) | 56 |
| BmsI | GCATC | 4 cut(s) | 502, 808, 1215, 1465 |
| BmuI | ACTGGG | 1 cut(s) | 56 |
| BpiI | GAAGAC | 2 cut(s) | 250, 843 |
| BpmI | CTGGAG | 1 cut(s) | 833 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1117 |
| BpuEI | CTTGAG | 3 cut(s) | 86, 362, 1256 |
| BpuMI | CCSGG | 5 cut(s) | 524, 1065, 1374, 1620, 1621 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1326 |
| BsaI | GGTCTC | 1 cut(s) | 983 |
| BsaJI | CCNNGG | 8 cut(s) | 204, 267, 274, 1064, 1204, 1618, 1619, 1620 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 272, 302 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1173 |
| Bse118I | RCCGGY | 1 cut(s) | 10 |
| Bse1I | ACTGG | 2 cut(s) | 62, 199 |
| Bse21I | CCTNAGG | 1 cut(s) | 1649 |
| Bse3DI | GCAATG | 4 cut(s) | 424, 508, 907, 1590 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1326 |
| BseBI | CCWGG | 1 cut(s) | 812 |
| BseDI | CCNNGG | 8 cut(s) | 204, 267, 274, 1064, 1204, 1618, 1619, 1620 |
| BseGI | GGATG | 3 cut(s) | 823, 1230, 1327 |
| BseJI | GATNNNNATC | 1 cut(s) | 1326 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1173 |
| BseMI | GCAATG | 4 cut(s) | 424, 508, 907, 1590 |
| BseMII | CTCAG | 6 cut(s) | 323, 351, 486, 872, 1434, 1732 |
| BseNI | ACTGG | 2 cut(s) | 62, 199 |
| BseRI | GAGGAG | 1 cut(s) | 1028 |
| BseSI | GKGCMC | 2 cut(s) | 86, 473 |
| BseXI | GCAGC | 2 cut(s) | 17, 1663 |
| BsgI | GTGCAG | 2 cut(s) | 163, 762 |
| Bsh1236I | CGCG | 1 cut(s) | 276 |
| BshFI | GGCC | 3 cut(s) | 272, 601, 1589 |
| BshNI | GGYRCC | 1 cut(s) | 197 |
| BsiHKAI | GWGCWC | 5 cut(s) | 86, 102, 338, 679, 1763 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1619 |
| BsiSI | CCGG | 5 cut(s) | 11, 523, 1064, 1374, 1620 |
| BslFI | GGGAC | 1 cut(s) | 1439 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1173 |
| BsmAI | GTCTC | 3 cut(s) | 70, 983, 1344 |
| BsmFI | GGGAC | 1 cut(s) | 1439 |
| BsnI | GGCC | 3 cut(s) | 272, 601, 1589 |
| Bso31I | GGTCTC | 1 cut(s) | 983 |
| BsoBI | CYCGRG | 1 cut(s) | 1619 |
| Bsp1286I | GDGCHC | 8 cut(s) | 29, 86, 102, 338, 473, 679, 1605, 1763 |
| Bsp1407I | TGTACA | 2 cut(s) | 489, 559 |
| Bsp143I | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| Bsp19I | CCATGG | 2 cut(s) | 204, 267 |
| BspACI | CCGC | 7 cut(s) | 274, 276, 515, 821, 1197, 1228, 1307 |
| BspANI | GGCC | 3 cut(s) | 272, 601, 1589 |
| BspCNI | CTCAG | 6 cut(s) | 324, 350, 487, 871, 1433, 1731 |
| BspFNI | CGCG | 1 cut(s) | 276 |
| BspLI | GGNNCC | 1 cut(s) | 199 |
| BspPI | GGATC | 1 cut(s) | 1335 |
| BspT107I | GGYRCC | 1 cut(s) | 197 |
| BspTI | CTTAAG | 2 cut(s) | 647, 1333 |
| BspTNI | GGTCTC | 1 cut(s) | 983 |
| BsrDI | GCAATG | 4 cut(s) | 424, 508, 907, 1590 |
| BsrFI | RCCGGY | 1 cut(s) | 10 |
| BsrGI | TGTACA | 2 cut(s) | 489, 559 |
| BsrI | ACTGG | 2 cut(s) | 62, 199 |
| BssAI | RCCGGY | 1 cut(s) | 10 |
| BssECI | CCNNGG | 8 cut(s) | 204, 267, 274, 1064, 1204, 1618, 1619, 1620 |
| BssMI | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| BssT1I | CCWWGG | 2 cut(s) | 204, 267 |
| Bst2UI | CCWGG | 1 cut(s) | 812 |
| Bst4CI | ACNGT | 3 cut(s) | 1107, 1208, 1450 |
| Bst6I | CTCTTC | 2 cut(s) | 350, 378 |
| BstAFI | CTTAAG | 2 cut(s) | 647, 1333 |
| BstAUI | TGTACA | 2 cut(s) | 489, 559 |
| BstC8I | GCNNGC | 9 cut(s) | 274, 286, 385, 391, 520, 636, 640, 1195, 1494 |
| BstDSI | CCRYGG | 4 cut(s) | 204, 267, 274, 1204 |
| BstF5I | GGATG | 3 cut(s) | 823, 1230, 1327 |
| BstFNI | CGCG | 1 cut(s) | 276 |
| BstHHI | GCGC | 1 cut(s) | 389 |
| BstKTI | GATC | 6 cut(s) | 343, 576, 966, 1284, 1330, 1698 |
| BstMAI | GTCTC | 3 cut(s) | 70, 983, 1344 |
| BstMBI | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 285, 869 |
| BstNI | CCWGG | 1 cut(s) | 812 |
| BstNSI | RCATGY | 1 cut(s) | 490 |
| BstSCI | CCNGG | 6 cut(s) | 522, 810, 1063, 1372, 1618, 1619 |
| BstSFI | CTRYAG | 3 cut(s) | 991, 1033, 1378 |
| BstSLI | GKGCMC | 2 cut(s) | 86, 473 |
| BstUI | CGCG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 2 cut(s) | 17, 1663 |
| BstV2I | GAAGAC | 2 cut(s) | 250, 843 |
| BstX2I | RGATCY | 1 cut(s) | 340 |
| BstYI | RGATCY | 1 cut(s) | 340 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1649 |
| BsuI | GTATCC | 1 cut(s) | 717 |
| BsuRI | GGCC | 3 cut(s) | 272, 601, 1589 |
| BtgI | CCRYGG | 4 cut(s) | 204, 267, 274, 1204 |
| BtrI | CACGTC | 1 cut(s) | 87 |
| BtsCI | GGATG | 3 cut(s) | 823, 1230, 1327 |
| BtsI | GCAGTG | 1 cut(s) | 774 |
| BtsIMutI | CAGTG | 3 cut(s) | 492, 774, 779 |
| Cac8I | GCNNGC | 9 cut(s) | 274, 286, 385, 391, 520, 636, 640, 1195, 1494 |
| CfoI | GCGC | 1 cut(s) | 389 |
| Cfr10I | RCCGGY | 1 cut(s) | 10 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| Cfr42I | CCGCGG | 1 cut(s) | 277 |
| Cfr9I | CCCGGG | 1 cut(s) | 1619 |
| CseI | GACGC | 1 cut(s) | 1122 |
| Csp6I | GTAC | 4 cut(s) | 198, 490, 560, 1451 |
| CviQI | GTAC | 4 cut(s) | 198, 490, 560, 1451 |
| DpnI | GATC | 6 cut(s) | 342, 575, 965, 1283, 1329, 1697 |
| DpnII | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| DraIII | CACNNNGTG | 1 cut(s) | 498 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 152, 254 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 152, 254 |
| EaeI | YGGCCR | 2 cut(s) | 599, 1587 |
| Eam1104I | CTCTTC | 2 cut(s) | 350, 378 |
| EarI | CTCTTC | 2 cut(s) | 350, 378 |
| Ecl136II | GAGCTC | 2 cut(s) | 100, 336 |
| Eco130I | CCWWGG | 2 cut(s) | 204, 267 |
| Eco24I | GRGCYC | 4 cut(s) | 29, 102, 338, 1605 |
| Eco31I | GGTCTC | 1 cut(s) | 983 |
| Eco53kI | GAGCTC | 2 cut(s) | 100, 336 |
| Eco81I | CCTNAGG | 1 cut(s) | 1649 |
| Eco88I | CYCGRG | 1 cut(s) | 1619 |
| EcoICRI | GAGCTC | 2 cut(s) | 100, 336 |
| EcoRI | GAATTC | 2 cut(s) | 948, 1412 |
| EcoRII | CCWGG | 1 cut(s) | 810 |
| EcoT14I | CCWWGG | 2 cut(s) | 204, 267 |
| EcoT38I | GRGCYC | 4 cut(s) | 29, 102, 338, 1605 |
| ErhI | CCWWGG | 2 cut(s) | 204, 267 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1548, 1580 |
| FaqI | GGGAC | 1 cut(s) | 1439 |
| FauI | CCCGC | 3 cut(s) | 281, 1221, 1300 |
| FbaI | TGATCA | 2 cut(s) | 573, 1281 |
| FblI | GTMKAC | 1 cut(s) | 1215 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 277, 516, 1677 |
| FokI | GGATG | 3 cut(s) | 830, 1237, 1334 |
| FriOI | GRGCYC | 4 cut(s) | 29, 102, 338, 1605 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 277, 516, 1677 |
| FspBI | CTAG | 2 cut(s) | 1100, 1520 |
| GlaI | GCGC | 1 cut(s) | 388 |
| GluI | GCNGC | 4 cut(s) | 6, 277, 516, 1677 |
| GsuI | CTGGAG | 1 cut(s) | 833 |
| HaeIII | GGCC | 3 cut(s) | 272, 601, 1589 |
| HapII | CCGG | 5 cut(s) | 11, 523, 1064, 1374, 1620 |
| HgaI | GACGC | 1 cut(s) | 1122 |
| HhaI | GCGC | 1 cut(s) | 389 |
| Hin6I | GCGC | 1 cut(s) | 387 |
| HinP1I | GCGC | 1 cut(s) | 387 |
| HinfI | GANTC | 3 cut(s) | 1005, 1259, 1734 |
| HpaII | CCGG | 5 cut(s) | 11, 523, 1064, 1374, 1620 |
| HphI | GGTGA | 6 cut(s) | 29, 151, 233, 443, 1220, 1405 |
| Hpy166II | GTNNAC | 6 cut(s) | 84, 492, 562, 772, 1216, 1396 |
| Hpy188I | TCNGA | 3 cut(s) | 333, 340, 1721 |
| Hpy188III | TCNNGA | 3 cut(s) | 626, 1110, 1508 |
| Hpy8I | GTNNAC | 6 cut(s) | 84, 492, 562, 772, 1216, 1396 |
| HpyAV | CCTTC | 2 cut(s) | 404, 934 |
| HpyCH4III | ACNGT | 3 cut(s) | 1107, 1208, 1450 |
| HpyCH4IV | ACGT | 3 cut(s) | 86, 507, 735 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 285, 869 |
| HpySE526I | ACGT | 3 cut(s) | 86, 507, 735 |
| HspAI | GCGC | 1 cut(s) | 387 |
| KpnI | GGTACC | 1 cut(s) | 201 |
| Ksp22I | TGATCA | 2 cut(s) | 573, 1281 |
| KspI | CCGCGG | 1 cut(s) | 277 |
| Kzo9I | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| LmnI | GCTCC | 4 cut(s) | 293, 701, 1388, 1432 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 1663 |
| LweI | GCATC | 4 cut(s) | 502, 808, 1215, 1465 |
| MaeI | CTAG | 2 cut(s) | 1100, 1520 |
| MaeII | ACGT | 3 cut(s) | 86, 507, 735 |
| MaeIII | GTNAC | 1 cut(s) | 661 |
| MalI | GATC | 6 cut(s) | 342, 575, 965, 1283, 1329, 1697 |
| MboI | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| MfeI | CAATTG | 1 cut(s) | 419 |
| MflI | RGATCY | 1 cut(s) | 340 |
| MhlI | GDGCHC | 8 cut(s) | 29, 86, 102, 338, 473, 679, 1605, 1763 |
| MlsI | TGGCCA | 1 cut(s) | 1589 |
| MluNI | TGGCCA | 1 cut(s) | 1589 |
| MlyI | GAGTC | 1 cut(s) | 1253 |
| Mox20I | TGGCCA | 1 cut(s) | 1589 |
| MscI | TGGCCA | 1 cut(s) | 1589 |
| MslI | CAYNNNNRTG | 6 cut(s) | 464, 845, 900, 1209, 1223, 1391 |
| Msp20I | TGGCCA | 1 cut(s) | 1589 |
| MspA1I | CMGCKG | 1 cut(s) | 276 |
| MspCI | CTTAAG | 2 cut(s) | 647, 1333 |
| MspI | CCGG | 5 cut(s) | 11, 523, 1064, 1374, 1620 |
| MspR9I | CCNGG | 6 cut(s) | 524, 812, 1065, 1374, 1620, 1621 |
| MunI | CAATTG | 1 cut(s) | 419 |
| MvaI | CCWGG | 1 cut(s) | 812 |
| MvnI | CGCG | 1 cut(s) | 276 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 285, 869 |
| NciI | CCSGG | 5 cut(s) | 524, 1065, 1374, 1620, 1621 |
| NcoI | CCATGG | 2 cut(s) | 204, 267 |
| NdeII | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| NlaIV | GGNNCC | 1 cut(s) | 199 |
| NspI | RCATGY | 1 cut(s) | 490 |
| PciI | ACATGT | 1 cut(s) | 486 |
| PfeI | GAWTC | 2 cut(s) | 1005, 1734 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1173 |
| PkrI | GCNGC | 4 cut(s) | 7, 278, 517, 1678 |
| PleI | GAGTC | 1 cut(s) | 1253 |
| PpsI | GAGTC | 1 cut(s) | 1253 |
| PscI | ACATGT | 1 cut(s) | 486 |
| Psp124BI | GAGCTC | 2 cut(s) | 102, 338 |
| Psp6I | CCWGG | 1 cut(s) | 810 |
| PspGI | CCWGG | 1 cut(s) | 810 |
| PspN4I | GGNNCC | 1 cut(s) | 199 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| PsuI | RGATCY | 1 cut(s) | 340 |
| RsaI | GTAC | 4 cut(s) | 199, 491, 561, 1452 |
| RsaNI | GTAC | 4 cut(s) | 198, 490, 560, 1451 |
| RseI | CAYNNNNRTG | 6 cut(s) | 464, 845, 900, 1209, 1223, 1391 |
| SacI | GAGCTC | 2 cut(s) | 102, 338 |
| SacII | CCGCGG | 1 cut(s) | 277 |
| SatI | GCNGC | 4 cut(s) | 6, 277, 516, 1677 |
| Sau3AI | GATC | 6 cut(s) | 340, 573, 963, 1281, 1327, 1695 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| ScaI | AGTACT | 1 cut(s) | 1452 |
| SchI | GAGTC | 1 cut(s) | 1253 |
| ScrFI | CCNGG | 6 cut(s) | 524, 812, 1065, 1374, 1620, 1621 |
| SduI | GDGCHC | 8 cut(s) | 29, 86, 102, 338, 473, 679, 1605, 1763 |
| SfaNI | GCATC | 4 cut(s) | 502, 808, 1215, 1465 |
| SfcI | CTRYAG | 3 cut(s) | 991, 1033, 1378 |
| Sfr303I | CCGCGG | 1 cut(s) | 277 |
| SgrBI | CCGCGG | 1 cut(s) | 277 |
| SmaI | CCCGGG | 1 cut(s) | 1621 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 464, 845, 900, 1209, 1223, 1391 |
| SmlI | CTYRAG | 5 cut(s) | 101, 377, 647, 1235, 1333 |
| SmoI | CTYRAG | 5 cut(s) | 101, 377, 647, 1235, 1333 |
| SsiI | CCGC | 7 cut(s) | 274, 276, 515, 821, 1197, 1228, 1307 |
| SspI | AATATT | 1 cut(s) | 1245 |
| SspMI | CTAG | 2 cut(s) | 1100, 1520 |
| SstI | GAGCTC | 2 cut(s) | 102, 338 |
| StyD4I | CCNGG | 6 cut(s) | 522, 810, 1063, 1372, 1618, 1619 |
| StyI | CCWWGG | 2 cut(s) | 204, 267 |
| TaaI | ACNGT | 3 cut(s) | 1107, 1208, 1450 |
| TaiI | ACGT | 3 cut(s) | 89, 510, 738 |
| TaqI | TCGA | 8 cut(s) | 228, 304, 589, 625, 946, 952, 1289, 1705 |
| TatI | WGTACW | 3 cut(s) | 489, 559, 1450 |
| TauI | GCSGC | 2 cut(s) | 279, 518 |
| TfiI | GAWTC | 2 cut(s) | 1005, 1734 |
| TscAI | CASTG | 3 cut(s) | 499, 781, 786 |
| TseI | GCWGC | 2 cut(s) | 5, 1676 |
| TspDTI | ATGAA | 6 cut(s) | 675, 950, 1126, 1158, 1425, 1517 |
| TspGWI | ACGGA | 1 cut(s) | 1622 |
| TspMI | CCCGGG | 1 cut(s) | 1619 |
| TspRI | CASTG | 3 cut(s) | 499, 781, 786 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1173 |
| Vha464I | CTTAAG | 2 cut(s) | 647, 1333 |
| VneI | GTGCAC | 1 cut(s) | 82 |
| XapI | RAATTY | 5 cut(s) | 234, 948, 1291, 1368, 1412 |
| XceI | RCATGY | 1 cut(s) | 490 |
| XmaI | CCCGGG | 1 cut(s) | 1619 |
| XmiI | GTMKAC | 1 cut(s) | 1215 |
| XspI | CTAG | 2 cut(s) | 1100, 1520 |
| ZrmI | AGTACT | 1 cut(s) | 1452 |