Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016684

Physical Location & Seq

Genomic Coordinates Reverse (-)

60859139 .. 60877027

Gene Structure 17889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGGCATCACTGGCTGTCCAAATAACCCCAATCTCTCACCCAAAAGCTCACACTCACTCCCCAATCTCTCTAATCCCTAAATGCACCTCTCTCACAGAACTCCAGCAAATCCAAGCCTTTTCCATCAAAACCCATCTCCAATATGACTTCTCTGTCCTCGCCAAGCTCATCAACTCCTGCACACTCAACCCAACTAGACACTCCATGGACTATGCCCACCACCTGTTCCACCAAATTCCCCACCCGGACATTGTCGTCTTCAACACCATGGCACGTGGTTACTCACGCTCCAATACCCCATTTCGCGCCATTTCACTCTTTTCCCAGGTTCTATCCCCAGGTCTCTTCCCAGATGACTACACATTCCCGGCACTTCTCAAGGCTTGCGCCGGCTCTAAAGCCTTAGAAGAAGGGAAGCAGTTGCATTGCTATGTTATCAAATATGGAATGCAACTTAACATATTCGTGTGTCCTGCTCTTATAAATATGTACACTGAGTGCAGTGATGTGGATGCAGCTCGCCGGGTTTTTGATAAGATACTGGACCCTTGTGTTGTTGTGCATAATGCTATGCTCACAGGGTATGCTAGAAACAGTCGGCCCAATGAGGCATTGGCATTGTTTCGAGAGTTGCAAGCGAGTGGTCTTAAGCCAACCGATGTTACTATGCTTAGTGCTCTTTCGTCGTGTGCTTTGCTAGGTGCATTGGACTTGGGGAAGTGGATACATGAGTATGTTAAGAAGAATAGGTTTGATAGATATGTTAAAGTGAACACTGCATTAATAGATATGTATTCAAAGTGTGGGAGCCTGGAGGATGCAGTGTCTGTGTTTGAGAACATGAGTGTGACAGATACACAGGCTTGGTCTGCAATGATTGTGGCGTATGCAACTCATGGGAATGTTTCCAAAGCTATATCGATGCTTGAAGAGATGAAGAAGGCACGAATTCGACCTGATGAGATCACATTTCTGGGTCTCTTATATGCGTGTAGTCATGCTGGATTTGTTGAGGAGGGTTGCAAGTATTTCTACAGCATGAGTGAGAACTATGGGATTATACCCAAGATTAAGCATTATGGGTGTGTGGTGGATTTGCTAGGTCGGGCTGGACGTTTAGGGGAGGCTTACAAGTTCATAGTTGAGCTACCAATTAAGCCTACGCCTATAATCTGGCGAACATTGTTATCTGCTTGTTGCAGTCATGGTGATGTAGACATGGGGATGCGGGTGCTTGAGCGAATTTTTGAGTTAGATGACTCTCATGGTGGGGATTATGTGATCATATCTAACTTGTGTGCAAGAGCAGGAAGATGGGAGGATGTTGATTACTTGAGGAAACTGATGAAAGACAGAGGCATTGTAAAGATTCCCGGGTGTAGCGCCATAGAGATGAACAATGTAGTGCATGAATTCTTCTCTGGGGATGGCGAGCGTTCTGTTTCCAAAGTACAGCATCAGGCAGTTGATGAGTTGATTGAAGAATTAAAGCTGGCCGGATATGTTCCAGATACTTCTTTGGTGTTTCATTCTGACATGGATGATAGAGATAGAGAGCTTTCTCTTAGATATCATAGTGAGAAATTAGCCATTACTTATGGGCTCCTAAACACAGCTGCTGGGACAACAATTCGAGTTGTGAAGAACCTTAGGGTATGTGGGGATTGCCACTCTGCTGCTAAATACATATCATTGATCTTTAATAGACAAATAGTTCTTAGAGATGTTCAACGGTTCCATCATTTCAAAGATGGCAAGTGTTCTTGTGTGGACTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

593

Amino Acids

66.59

Weight (kDa)

7.3

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 130	9.6e-07	PPR repeat family
PPR_2	PF13041	183 - 230	2.6e-08	PPR repeat family
PPR_2	PF13041	285 - 332	1.8e-09	PPR repeat family
PPR	PF01535	288 - 316	1e-05	PPR repeat
E_motif	PF20431	402 - 464	4.4e-17	E motif
DYW_deaminase	PF14432	500 - 593	6.2e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02980 AT5G66520
fragaria_vesca	FvH4_4g31300
malus_domestica	MD13G1071700.v1.1
prunus_persica	Prupe.1G275200_v2.0.a1
pyrus_communis	pycom13g06430
rosa_chinensis	RchiOBHm_Chr4g0439791
rosa_laevigata	RLG00000006238
rosa_multiflora	Rmu_sc0010226.1_g000006 Rmu_ssc0000029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00380690
rosa_rugosa	Rorug04G0321400
rosa_samantha	Rh4BG384700
rosa_wichuraiana	Rw4G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AasI	GACNNNNNNGTC	2 cut(s)	152, 254
AccI	GTMKAC	1 cut(s)	1215
AccII	CGCG	1 cut(s)	306
AciI	CCGC	1 cut(s)	1228
AcoI	YGGCCR	1 cut(s)	1494
AcsI	RAATTY	4 cut(s)	234, 948, 1242, 1412
AcvI	CACGTG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	491, 1452
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	6 cut(s)	262, 798, 929, 1481, 1730, 1747
AjnI	CCWGG	3 cut(s)	324, 337, 810
AluBI	AGCT	8 cut(s)	47, 166, 518, 914, 1147, 1492, 1558, 1616
AluI	AGCT	8 cut(s)	47, 166, 518, 914, 1147, 1492, 1558, 1616
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	347, 983
AlwNI	CAGNNNCTG	2 cut(s)	827, 1619
Ama87I	CYCGRG	1 cut(s)	1373
AoxI	GGCC	2 cut(s)	599, 1494
ApeKI	GCWGC	3 cut(s)	515, 1616, 1676
ApoI	RAATTY	4 cut(s)	234, 948, 1242, 1412
AseI	ATTAAT	1 cut(s)	782
AspLEI	GCGC	3 cut(s)	308, 389, 1385
AspS9I	GGNCC	2 cut(s)	544, 600
AsuC2I	CCSGG	5 cut(s)	245, 368, 524, 1374, 1375
AsuHPI	GGTGA	2 cut(s)	29, 1220
AvaI	CYCGRG	1 cut(s)	1373
AvaII	GGWCC	1 cut(s)	544
AxyI	CCTNAGG	1 cut(s)	1649
BaeI	ACNNNNGTAYC	2 cut(s)	716, 749
BanII	GRGCYC	1 cut(s)	1605
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	3 cut(s)	527, 1603, 1663
BccI	CCATC	6 cut(s)	131, 141, 1308, 1421, 1745, 1746
BciT130I	CCWGG	3 cut(s)	326, 339, 812
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	1 cut(s)	1281
BcnI	CCSGG	5 cut(s)	245, 368, 524, 1374, 1375
BcoDI	GTCTC	2 cut(s)	347, 983
BfaI	CTAG	4 cut(s)	195, 588, 698, 1100
BfmI	CTRYAG	1 cut(s)	1033
BfoI	RGCGCY	1 cut(s)	1386
BfrI	CTTAAG	1 cut(s)	647
BfuI	GTATCC	1 cut(s)	717
BisI	GCNGC	3 cut(s)	516, 1617, 1677
BlsI	GCNGC	3 cut(s)	517, 1618, 1678
Bme1390I	CCNGG	8 cut(s)	245, 326, 339, 368, 524, 812, 1374, 1375
Bme18I	GGWCC	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	1373
BmgT120I	GGNCC	2 cut(s)	544, 600
BmiI	GGNNCC	4 cut(s)	546, 809, 1604, 1736
BmrFI	CCNGG	8 cut(s)	245, 326, 339, 368, 524, 812, 1374, 1375
BmsI	GCATC	6 cut(s)	14, 502, 808, 912, 1215, 1465
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	2 cut(s)	86, 833
BpuEI	CTTGAG	3 cut(s)	362, 1256, 1354
BpuMI	CCSGG	5 cut(s)	245, 368, 524, 1374, 1375
Bsa29I	ATCGAT	1 cut(s)	920
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	2 cut(s)	347, 983
BsaJI	CCNNGG	5 cut(s)	204, 267, 324, 337, 1373
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 272, 302
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	15, 546
Bse21I	CCTNAGG	1 cut(s)	1649
Bse3DI	GCAATG	2 cut(s)	424, 879
BseBI	CCWGG	3 cut(s)	326, 339, 812
BseCI	ATCGAT	1 cut(s)	920
BseDI	CCNNGG	5 cut(s)	204, 267, 324, 337, 1373
BseGI	GGATG	6 cut(s)	517, 823, 1230, 1327, 1432, 1546
BseMI	GCAATG	2 cut(s)	424, 879
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	15, 546
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	3 cut(s)	527, 1603, 1663
BseYI	CCCAGC	1 cut(s)	1619
BsgI	GTGCAG	2 cut(s)	163, 520
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	601, 1496
BshVI	ATCGAT	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	1373
BsiSI	CCGG	6 cut(s)	245, 368, 390, 523, 1374, 1497
BslFI	GGGAC	1 cut(s)	1636
BsmAI	GTCTC	2 cut(s)	347, 983
BsmFI	GGGAC	1 cut(s)	1636
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	601, 1496
Bso31I	GGTCTC	2 cut(s)	347, 983
BsoBI	CYCGRG	1 cut(s)	1373
Bsp1286I	GDGCHC	2 cut(s)	679, 1605
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	963, 1281, 1695
Bsp19I	CCATGG	2 cut(s)	204, 267
BspACI	CCGC	1 cut(s)	1228
BspANI	GGCC	2 cut(s)	601, 1496
BspCNI	CTCAG	1 cut(s)	487
BspDI	ATCGAT	1 cut(s)	920
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	546, 809, 1604, 1736
BspTI	CTTAAG	1 cut(s)	647
BspTNI	GGTCTC	2 cut(s)	347, 983
BsrDI	GCAATG	2 cut(s)	424, 879
BsrFI	RCCGGY	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	15, 546
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	5 cut(s)	204, 267, 324, 337, 1373
BssMI	GATC	3 cut(s)	963, 1281, 1695
BssT1I	CCWWGG	2 cut(s)	204, 267
Bst2UI	CCWGG	3 cut(s)	326, 339, 812
Bst4CI	ACNGT	2 cut(s)	596, 1734
Bst6I	CTCTTC	2 cut(s)	350, 924
BstAFI	CTTAAG	1 cut(s)	647
BstAUI	TGTACA	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	6 cut(s)	385, 391, 520, 636, 1433, 1494
BstDEI	CTNAG	6 cut(s)	403, 495, 671, 1565, 1649, 1718
BstDSI	CCRYGG	2 cut(s)	204, 267
BstF5I	GGATG	6 cut(s)	517, 823, 1230, 1327, 1432, 1546
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	1386
BstHHI	GCGC	3 cut(s)	308, 389, 1385
BstKTI	GATC	3 cut(s)	966, 1284, 1698
BstMAI	GTCTC	2 cut(s)	347, 983
BstMBI	GATC	3 cut(s)	963, 1281, 1695
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 869
BstNI	CCWGG	3 cut(s)	326, 339, 812
BstSCI	CCNGG	8 cut(s)	243, 324, 337, 366, 522, 810, 1372, 1373
BstSFI	CTRYAG	1 cut(s)	1033
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	527, 1603, 1663
BstV2I	GAAGAC	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	920
Bsu36I	CCTNAGG	1 cut(s)	1649
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	601, 1496
BsuTUI	ATCGAT	1 cut(s)	920
BtgI	CCRYGG	2 cut(s)	204, 267
BtsCI	GGATG	6 cut(s)	517, 823, 1230, 1327, 1432, 1546
BtsI	GCAGTG	3 cut(s)	508, 774, 828
BtsIMutI	CAGTG	5 cut(s)	8, 492, 508, 774, 828
Cac8I	GCNNGC	6 cut(s)	385, 391, 520, 636, 1433, 1494
CaiI	CAGNNNCTG	2 cut(s)	827, 1619
CfoI	GCGC	3 cut(s)	308, 389, 1385
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	544, 600
Cfr9I	CCCGGG	1 cut(s)	1373
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	2 cut(s)	490, 1451
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviQI	GTAC	2 cut(s)	490, 1451
DdeI	CTNAG	6 cut(s)	403, 495, 671, 1565, 1649, 1718
DpnI	GATC	3 cut(s)	965, 1283, 1697
DpnII	GATC	3 cut(s)	963, 1281, 1695
DraIII	CACNNNGTG	1 cut(s)	498
DrdI	GACNNNNNNGTC	2 cut(s)	152, 254
DseDI	GACNNNNNNGTC	2 cut(s)	152, 254
EaeI	YGGCCR	1 cut(s)	1494
Eam1104I	CTCTTC	2 cut(s)	350, 924
EarI	CTCTTC	2 cut(s)	350, 924
Eco130I	CCWWGG	2 cut(s)	204, 267
Eco24I	GRGCYC	1 cut(s)	1605
Eco31I	GGTCTC	2 cut(s)	347, 983
Eco32I	GATATC	1 cut(s)	1571
Eco47I	GGWCC	1 cut(s)	544
Eco72I	CACGTG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	1649
Eco88I	CYCGRG	1 cut(s)	1373
EcoRI	GAATTC	2 cut(s)	948, 1412
EcoRII	CCWGG	3 cut(s)	324, 337, 810
EcoRV	GATATC	1 cut(s)	1571
EcoT14I	CCWWGG	2 cut(s)	204, 267
EcoT38I	GRGCYC	1 cut(s)	1605
ErhI	CCWWGG	2 cut(s)	204, 267
FaqI	GGGAC	1 cut(s)	1636
FauI	CCCGC	1 cut(s)	1221
FbaI	TGATCA	1 cut(s)	1281
FblI	GTMKAC	1 cut(s)	1215
Fnu4HI	GCNGC	3 cut(s)	516, 1617, 1677
FokI	GGATG	6 cut(s)	524, 830, 1237, 1334, 1439, 1553
FriOI	GRGCYC	1 cut(s)	1605
Fsp4HI	GCNGC	3 cut(s)	516, 1617, 1677
FspBI	CTAG	4 cut(s)	195, 588, 698, 1100
GlaI	GCGC	3 cut(s)	307, 388, 1384
GluI	GCNGC	3 cut(s)	516, 1617, 1677
GsaI	CCCAGC	1 cut(s)	1623
GsuI	CTGGAG	2 cut(s)	86, 833
HaeII	RGCGCY	1 cut(s)	1386
HaeIII	GGCC	2 cut(s)	601, 1496
HapII	CCGG	6 cut(s)	245, 368, 390, 523, 1374, 1497
HhaI	GCGC	3 cut(s)	308, 389, 1385
Hin6I	GCGC	3 cut(s)	306, 387, 1383
HinP1I	GCGC	3 cut(s)	306, 387, 1383
HinfI	GANTC	2 cut(s)	1259, 1369
HpaII	CCGG	6 cut(s)	245, 368, 390, 523, 1374, 1497
HphI	GGTGA	2 cut(s)	29, 1220
Hpy166II	GTNNAC	4 cut(s)	492, 772, 1216, 1771
Hpy188I	TCNGA	1 cut(s)	1534
Hpy188III	TCNNGA	2 cut(s)	626, 1508
Hpy8I	GTNNAC	4 cut(s)	492, 772, 1216, 1771
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	2 cut(s)	404, 934
HpyCH4III	ACNGT	2 cut(s)	596, 1734
HpyCH4IV	ACGT	2 cut(s)	274, 1114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 869
HpyF3I	CTNAG	6 cut(s)	403, 495, 671, 1565, 1649, 1718
HpySE526I	ACGT	2 cut(s)	274, 1114
HspAI	GCGC	3 cut(s)	306, 387, 1383
KroI	GCCGGC	1 cut(s)	389
KroNI	GCCGGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	1281
Kzo9I	GATC	3 cut(s)	963, 1281, 1695
LmnI	GCTCC	3 cut(s)	293, 807, 1608
Lsp1109I	GCAGC	3 cut(s)	527, 1603, 1663
LweI	GCATC	6 cut(s)	14, 502, 808, 912, 1215, 1465
MaeI	CTAG	4 cut(s)	195, 588, 698, 1100
MaeII	ACGT	2 cut(s)	274, 1114
MaeIII	GTNAC	3 cut(s)	278, 661, 847
MalI	GATC	3 cut(s)	965, 1283, 1697
MboI	GATC	3 cut(s)	963, 1281, 1695
MhlI	GDGCHC	2 cut(s)	679, 1605
MluCI	AATT	8 cut(s)	234, 948, 1152, 1242, 1412, 1484, 1583, 1629
MlyI	GAGTC	1 cut(s)	1253
MroNI	GCCGGC	1 cut(s)	389
MseI	TTAA	9 cut(s)	456, 648, 738, 765, 782, 1071, 1155, 1487, 1701
MslI	CAYNNNNRTG	8 cut(s)	429, 464, 732, 845, 900, 1209, 1223, 1391
MspA1I	CMGCKG	1 cut(s)	1616
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	6 cut(s)	245, 368, 390, 523, 1374, 1497
MspR9I	CCNGG	8 cut(s)	245, 326, 339, 368, 524, 812, 1374, 1375
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	3 cut(s)	326, 339, 812
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	11, 869
NaeI	GCCGGC	1 cut(s)	391
NciI	CCSGG	5 cut(s)	245, 368, 524, 1374, 1375
NcoI	CCATGG	2 cut(s)	204, 267
NdeII	GATC	3 cut(s)	963, 1281, 1695
NgoMIV	GCCGGC	1 cut(s)	389
NlaIV	GGNNCC	4 cut(s)	546, 809, 1604, 1736
NmuCI	GTSAC	1 cut(s)	847
PcsI	WCGNNNNNNNCGW	1 cut(s)	1111
PctI	GAATGC	1 cut(s)	453
PdiI	GCCGGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	1369
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	517, 1618, 1678
PleI	GAGTC	1 cut(s)	1253
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	1253
Ppu21I	YACGTR	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	782
PsiI	TTATAA	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	324, 337, 810
PspCI	CACGTG	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	1619
PspGI	CCWGG	3 cut(s)	324, 337, 810
PspN4I	GGNNCC	4 cut(s)	546, 809, 1604, 1736
PspPI	GGNCC	2 cut(s)	544, 600
PstNI	CAGNNNCTG	2 cut(s)	827, 1619
PsyI	GACNNNGTC	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	1616
RsaI	GTAC	2 cut(s)	491, 1452
RsaNI	GTAC	2 cut(s)	490, 1451
RseI	CAYNNNNRTG	8 cut(s)	429, 464, 732, 845, 900, 1209, 1223, 1391
SaqAI	TTAA	9 cut(s)	456, 648, 738, 765, 782, 1071, 1155, 1487, 1701
SatI	GCNGC	3 cut(s)	516, 1617, 1677
Sau3AI	GATC	3 cut(s)	963, 1281, 1695
Sau96I	GGNCC	2 cut(s)	544, 600
SchI	GAGTC	1 cut(s)	1253
ScrFI	CCNGG	8 cut(s)	245, 326, 339, 368, 524, 812, 1374, 1375
SduI	GDGCHC	2 cut(s)	679, 1605
SfaNI	GCATC	6 cut(s)	14, 502, 808, 912, 1215, 1465
SfcI	CTRYAG	1 cut(s)	1033
SinI	GGWCC	1 cut(s)	544
SmaI	CCCGGG	1 cut(s)	1375
SmiMI	CAYNNNNRTG	8 cut(s)	429, 464, 732, 845, 900, 1209, 1223, 1391
SmlI	CTYRAG	4 cut(s)	377, 647, 1235, 1333
SmoI	CTYRAG	4 cut(s)	377, 647, 1235, 1333
Sse9I	AATT	8 cut(s)	234, 948, 1152, 1242, 1412, 1484, 1583, 1629
SsiI	CCGC	1 cut(s)	1228
SspMI	CTAG	4 cut(s)	195, 588, 698, 1100
StyD4I	CCNGG	8 cut(s)	243, 324, 337, 366, 522, 810, 1372, 1373
StyI	CCWWGG	2 cut(s)	204, 267
TaaI	ACNGT	2 cut(s)	596, 1734
TaiI	ACGT	2 cut(s)	277, 1117
TaqI	TCGA	4 cut(s)	625, 920, 952, 1633
TasI	AATT	8 cut(s)	234, 948, 1152, 1242, 1412, 1484, 1583, 1629
TatI	WGTACW	2 cut(s)	489, 1450
TfiI	GAWTC	1 cut(s)	1369
Tru1I	TTAA	9 cut(s)	456, 648, 738, 765, 782, 1071, 1155, 1487, 1701
Tru9I	TTAA	9 cut(s)	456, 648, 738, 765, 782, 1071, 1155, 1487, 1701
TscAI	CASTG	5 cut(s)	15, 499, 508, 781, 828
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	3 cut(s)	515, 1616, 1676
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	6 cut(s)	950, 1126, 1361, 1409, 1425, 1517
TspMI	CCCGGG	1 cut(s)	1373
TspRI	CASTG	5 cut(s)	15, 499, 508, 781, 828
Tth111I	GACNNNGTC	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	544
VspI	ATTAAT	1 cut(s)	782
XapI	RAATTY	4 cut(s)	234, 948, 1242, 1412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmaI	CCCGGG	1 cut(s)	1373
XmiI	GTMKAC	1 cut(s)	1215
XspI	CTAG	4 cut(s)	195, 588, 698, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.