Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016684

Physical Location & Seq

Genomic Coordinates Reverse (-)

5033045 .. 5034826

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1071700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGGCAGCGCCGGCTGTCCAAATAAGCCCATTCTCTCACCCAAAAACCAACACAAACACCCCTCTCTCTCTCGTCCCCAAGTGCTCGACTTTGAGAGAAATCAAGCAAATCCATGCCTTTTCCATCAAAACCCATCTCCAATATGACATCTCCGTCCTCACCAAGCTCATCAATTTCTGCACCTCGAACCCAACAAGTACCTCCATGGACTACGCCCACCACCTGTTCGACCAAATTCCCCACCCGGACATCGTCGTCTTCAACACCGTTGCTCGCGGCTACGCGCGCTCTGGCACACCGTTTCGAGCCATTTCACTCTTTTCCCACGTTCTGTGCGCAGGTCTCTTCCCAGATGACTACACATTCCCGTCGCTTCTCAAGGCGTGCGCCGGCTCTAAAGCGTTAGAAGAAGGGAAGCAATTGCATTGCTTTGCTATCAAGTTTGGCCTCCACCTTAACATCTATGTGTGTCCTACACTCATAAATATGTACACCGAGTGCAATGATTTGGATGCCGCTCGCCGGGTGTTTGATAAGATAACTGACCCTTGTGTTGTTATACACAATGCCATGATCAAGGGCTATGCTCGAAGTAGCCGGCCAAATGAGGCGTTGGCGTTGTTTCGAGAAATGCAGGCAAGCAATGTTAAGCCGACTGATGTAACCATGCTTTGTGCTCTTTCTTCATGTGCTTTGTTAGGAGCATTAGACTTGGGAAAGTGGATACATGAATATGTTAAGAAAAACAGGTTTGATAGATACGTTAAAGTGAACACTGCACTGATAGACATGTATGCAAAATGTGGAAGCCTGGAGGATGCAGTGTCTGTATTCGAAAACATGAGCGACAAAGATACTCAGGCTTGGTCTGCAATCATCATGGCATATGCGACACACGGGCATTGTTCCAAAGCCATATCTATGTTTGAAGAAATGAAAAGAGCACGAATTAGACCTGACGATATCACCTTTTTGGGTCTCTTGTACGCGTGTAGTCATGCTGGATTTGTTGAGGAGGGTTGCAATTATTTCTACAGCATGAGTGAGAAATATGGGATTGCTCCAGGGATTAAGCATTATGGTTGCATGATAGATTTGCTAGGTCGGTCTGGACGCTTGGAGGAGGCTTACAACTTCATAGATGAGTTACCAATTAAGCCGACACCCATATTCTGGCGAACGTTGTTATCTGCTTGTGGCAGCCACGGTGATGTAGACATGGGGATGCGGGTGCTTAAACGGATTTTTGAGTTAGATGACTCTCATGGTGGGGATTATGTGATCATATCGAACTTGTGTGCAAGAGCGGGGAGATGGGAGGATGTGGATTACTTAAGGAAGTTGATGAGAAGCAGAGGAGTTGTAAAGATTCCCGGATGCAGCTCCATTGAGGTGAACAATGTAGTGCACGAATTCTTTTCTGGAGACGGGGAGCGTTCTGTTTCTACTGTACTGCACCAGGCGGTTGACGAATTGGTTGAAGAATTAAAGCTGGCTGGATATGTTCCTGATACTTCTCTAGTGTTTCATTCTAACATGGAAGATAAAGAGAGAGAAGTTTCTCTCAGATACCATAGTGAGAAGTTGGCGATTGCTTACGGGCTCTTAAACACAGCCCCCGGGGCAACAATCCGCGTCGTGAAGAACCTTAGGGTATGTGGGGATTGCCACTCTGCTGCTAAGTATATATCGTTGATCTTTAATAGGCATATAATTCTTCGAGATGTCCAACGGTTCCATCATTTCAAAGAGGGAAAGTGCTCTTGTGGAGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

594

Amino Acids

66.52

Weight (kDa)

7.3

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 130	7.1e-07	PPR repeat family
PPR_2	PF13041	183 - 230	3.8e-10	PPR repeat family
PPR	PF01535	186 - 215	1.1e-06	PPR repeat
PPR_2	PF13041	285 - 332	2.6e-09	PPR repeat family
PPR	PF01535	288 - 316	1e-05	PPR repeat
E_motif	PF20431	402 - 464	3.8e-16	E motif
DYW_deaminase	PF14432	500 - 593	1.8e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02980 AT5G66520
fragaria_vesca	FvH4_4g31300
malus_domestica	MD13G1071700.v1.1
prunus_persica	Prupe.1G275200_v2.0.a1
pyrus_communis	pycom13g06430
rosa_chinensis	RchiOBHm_Chr4g0439791
rosa_laevigata	RLG00000006238
rosa_multiflora	Rmu_sc0010226.1_g000006 Rmu_ssc0000029.1_g000006
rosa_roxburghii	Rroxscaffold_5G00380690
rosa_rugosa	Rorug04G0321400
rosa_samantha	Rh4BG384700
rosa_wichuraiana	Rw4G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	152, 254
Acc16I	TGCGCA	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	1173
AccBSI	CCGCTC	2 cut(s)	518, 1307
AccI	GTMKAC	1 cut(s)	1215
AccII	CGCG	5 cut(s)	276, 284, 286, 989, 1635
AciI	CCGC	6 cut(s)	276, 516, 1228, 1307, 1463, 1633
AclI	AACGTT	1 cut(s)	1181
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	2 cut(s)	234, 1412
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	4 cut(s)	199, 491, 986, 1452
AfiI	CCNNNNNNNGG	2 cut(s)	522, 1173
AflII	CTTAAG	1 cut(s)	1333
AflIII	ACRYGT	2 cut(s)	789, 987
AgsI	TTSAA	4 cut(s)	262, 929, 1481, 1747
AjnI	CCWGG	3 cut(s)	810, 1063, 1458
AluBI	AGCT	3 cut(s)	166, 1383, 1492
AluI	AGCT	3 cut(s)	166, 1383, 1492
Alw21I	GWGCWC	5 cut(s)	86, 679, 946, 1410, 1763
Alw26I	GTCTC	3 cut(s)	347, 983, 1419
Alw44I	GTGCAC	1 cut(s)	1406
AlwNI	CAGNNNCTG	1 cut(s)	827
Ama87I	CYCGRG	1 cut(s)	1619
AoxI	GGCC	2 cut(s)	445, 599
ApaLI	GTGCAC	1 cut(s)	1406
ApeKI	GCWGC	4 cut(s)	5, 1200, 1380, 1676
ApoI	RAATTY	2 cut(s)	234, 1412
AspLEI	GCGC	5 cut(s)	10, 286, 288, 338, 389
AsuC2I	CCSGG	5 cut(s)	245, 524, 1374, 1620, 1621
AsuHPI	GGTGA	5 cut(s)	29, 151, 958, 1220, 1405
AsuII	TTCGAA	1 cut(s)	834
AvaI	CYCGRG	1 cut(s)	1619
AxyI	CCTNAGG	1 cut(s)	1649
BaeGI	GKGCMC	1 cut(s)	1410
BaeI	ACNNNNGTAYC	2 cut(s)	1561, 1594
BanII	GRGCYC	1 cut(s)	1605
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	5 cut(s)	86, 679, 946, 1410, 1763
BbvI	GCAGC	4 cut(s)	17, 1212, 1392, 1663
BccI	CCATC	4 cut(s)	131, 141, 1308, 1746
BciT130I	CCWGG	3 cut(s)	812, 1065, 1460
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	2 cut(s)	573, 1281
BcnI	CCSGG	5 cut(s)	245, 524, 1374, 1620, 1621
BcoDI	GTCTC	3 cut(s)	347, 983, 1419
BfaI	CTAG	2 cut(s)	1100, 1520
BfmI	CTRYAG	1 cut(s)	1033
BfoI	RGCGCY	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	1333
BfuAI	ACCTGC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	717
BglI	GCCNNNNNGGC	1 cut(s)	1622
BisI	GCNGC	6 cut(s)	6, 277, 516, 1201, 1381, 1677
BlsI	GCNGC	6 cut(s)	7, 278, 517, 1202, 1382, 1678
Bme1390I	CCNGG	8 cut(s)	245, 524, 812, 1065, 1374, 1460, 1620, 1621
BmeT110I	CYCGRG	1 cut(s)	1619
BmiI	GGNNCC	1 cut(s)	1736
BmrFI	CCNGG	8 cut(s)	245, 524, 812, 1065, 1374, 1460, 1620, 1621
BmsI	GCATC	4 cut(s)	502, 808, 1215, 1367
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	3 cut(s)	833, 1047, 1443
Bpu14I	TTCGAA	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	5 cut(s)	245, 524, 1374, 1620, 1621
BsaI	GGTCTC	2 cut(s)	347, 983
BsaJI	CCNNGG	6 cut(s)	204, 1064, 1204, 1618, 1619, 1620
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 1173
Bse118I	RCCGGY	3 cut(s)	10, 389, 597
Bse21I	CCTNAGG	1 cut(s)	1649
Bse3DI	GCAATG	3 cut(s)	424, 508, 649
BseBI	CCWGG	3 cut(s)	812, 1065, 1460
BseDI	CCNNGG	6 cut(s)	204, 1064, 1204, 1618, 1619, 1620
BseGI	GGATG	5 cut(s)	517, 823, 1230, 1327, 1382
BseLI	CCNNNNNNNGG	2 cut(s)	522, 1173
BseMI	GCAATG	3 cut(s)	424, 508, 649
BseMII	CTCAG	2 cut(s)	872, 1579
BsePI	GCGCGC	1 cut(s)	284
BseRI	GAGGAG	3 cut(s)	1028, 1136, 1371
BseSI	GKGCMC	1 cut(s)	1410
BseXI	GCAGC	4 cut(s)	17, 1212, 1392, 1663
BsgI	GTGCAG	3 cut(s)	163, 762, 1439
Bsh1236I	CGCG	5 cut(s)	276, 284, 286, 989, 1635
BshFI	GGCC	2 cut(s)	447, 601
BsiHKAI	GWGCWC	5 cut(s)	86, 679, 946, 1410, 1763
BsiHKCI	CYCGRG	1 cut(s)	1619
BsiSI	CCGG	7 cut(s)	11, 245, 390, 523, 598, 1374, 1620
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	522, 1173
BsmAI	GTCTC	3 cut(s)	347, 983, 1419
BsmBI	CGTCTC	1 cut(s)	1419
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	447, 601
Bso31I	GGTCTC	2 cut(s)	347, 983
BsoBI	CYCGRG	1 cut(s)	1619
Bsp119I	TTCGAA	1 cut(s)	834
Bsp1286I	GDGCHC	6 cut(s)	86, 679, 946, 1410, 1605, 1763
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	573, 1281, 1695
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	6 cut(s)	276, 516, 1228, 1307, 1463, 1633
BspANI	GGCC	2 cut(s)	447, 601
BspCNI	CTCAG	2 cut(s)	871, 1578
BspFNI	CGCG	5 cut(s)	276, 284, 286, 989, 1635
BspLI	GGNNCC	1 cut(s)	1736
BspMI	ACCTGC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	834
BspTI	CTTAAG	1 cut(s)	1333
BspTNI	GGTCTC	2 cut(s)	347, 983
BsrBI	CCGCTC	2 cut(s)	518, 1307
BsrDI	GCAATG	3 cut(s)	424, 508, 649
BsrFI	RCCGGY	3 cut(s)	10, 389, 597
BsrGI	TGTACA	1 cut(s)	489
BssAI	RCCGGY	3 cut(s)	10, 389, 597
BssECI	CCNNGG	6 cut(s)	204, 1064, 1204, 1618, 1619, 1620
BssHII	GCGCGC	1 cut(s)	284
BssMI	GATC	3 cut(s)	573, 1281, 1695
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	812, 1065, 1460
Bst4CI	ACNGT	5 cut(s)	268, 300, 1208, 1450, 1734
Bst6I	CTCTTC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	1333
BstAUI	TGTACA	1 cut(s)	489
BstBI	TTCGAA	1 cut(s)	834
BstDEI	CTNAG	4 cut(s)	858, 1565, 1649, 1680
BstDSI	CCRYGG	2 cut(s)	204, 1204
BstF5I	GGATG	5 cut(s)	517, 823, 1230, 1327, 1382
BstFNI	CGCG	5 cut(s)	276, 284, 286, 989, 1635
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	5 cut(s)	10, 286, 288, 338, 389
BstKTI	GATC	3 cut(s)	576, 1284, 1698
BstMAI	GTCTC	3 cut(s)	347, 983, 1419
BstMBI	GATC	3 cut(s)	573, 1281, 1695
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 285, 869, 1622
BstNI	CCWGG	3 cut(s)	812, 1065, 1460
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	8 cut(s)	243, 522, 810, 1063, 1372, 1458, 1618, 1619
BstSFI	CTRYAG	1 cut(s)	1033
BstSLI	GKGCMC	1 cut(s)	1410
BstUI	CGCG	5 cut(s)	276, 284, 286, 989, 1635
BstV1I	GCAGC	4 cut(s)	17, 1212, 1392, 1663
BstV2I	GAAGAC	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	1649
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	447, 601
BtgI	CCRYGG	2 cut(s)	204, 1204
BtsCI	GGATG	5 cut(s)	517, 823, 1230, 1327, 1382
BtsI	GCAGTG	2 cut(s)	774, 828
BtsIMutI	CAGTG	3 cut(s)	774, 779, 828
BveI	ACCTGC	1 cut(s)	329
CaiI	CAGNNNCTG	1 cut(s)	827
CfoI	GCGC	5 cut(s)	10, 286, 288, 338, 389
Cfr10I	RCCGGY	3 cut(s)	10, 389, 597
Cfr9I	CCCGGG	1 cut(s)	1619
CseI	GACGC	2 cut(s)	1122, 1624
Csp6I	GTAC	4 cut(s)	198, 490, 985, 1451
CviQI	GTAC	4 cut(s)	198, 490, 985, 1451
DdeI	CTNAG	4 cut(s)	858, 1565, 1649, 1680
DpnI	GATC	3 cut(s)	575, 1283, 1697
DpnII	GATC	3 cut(s)	573, 1281, 1695
DraIII	CACNNNGTG	1 cut(s)	498
DrdI	GACNNNNNNGTC	2 cut(s)	152, 254
DseDI	GACNNNNNNGTC	2 cut(s)	152, 254
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	1605
Eco31I	GGTCTC	2 cut(s)	347, 983
Eco32I	GATATC	1 cut(s)	964
Eco81I	CCTNAGG	1 cut(s)	1649
Eco88I	CYCGRG	1 cut(s)	1619
EcoRI	GAATTC	1 cut(s)	1412
EcoRII	CCWGG	3 cut(s)	810, 1063, 1458
EcoRV	GATATC	1 cut(s)	964
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	1605
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	1419
FaqI	GGGAC	1 cut(s)	59
FauI	CCCGC	2 cut(s)	1221, 1300
FauNDI	CATATG	1 cut(s)	886
FbaI	TGATCA	2 cut(s)	573, 1281
FblI	GTMKAC	1 cut(s)	1215
Fnu4HI	GCNGC	6 cut(s)	6, 277, 516, 1201, 1381, 1677
FokI	GGATG	5 cut(s)	524, 830, 1237, 1334, 1389
FriOI	GRGCYC	1 cut(s)	1605
Fsp4HI	GCNGC	6 cut(s)	6, 277, 516, 1201, 1381, 1677
FspBI	CTAG	2 cut(s)	1100, 1520
FspI	TGCGCA	1 cut(s)	337
GlaI	GCGC	5 cut(s)	9, 285, 287, 337, 388
GluI	GCNGC	6 cut(s)	6, 277, 516, 1201, 1381, 1677
GsuI	CTGGAG	3 cut(s)	833, 1047, 1443
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	447, 601
HapII	CCGG	7 cut(s)	11, 245, 390, 523, 598, 1374, 1620
HgaI	GACGC	2 cut(s)	1122, 1624
HhaI	GCGC	5 cut(s)	10, 286, 288, 338, 389
Hin6I	GCGC	5 cut(s)	8, 284, 286, 336, 387
HinP1I	GCGC	5 cut(s)	8, 284, 286, 336, 387
HincII	GTYRAC	1 cut(s)	1468
HindII	GTYRAC	1 cut(s)	1468
HinfI	GANTC	2 cut(s)	1259, 1369
HpaII	CCGG	7 cut(s)	11, 245, 390, 523, 598, 1374, 1620
HphI	GGTGA	5 cut(s)	29, 151, 958, 1220, 1405
Hpy166II	GTNNAC	6 cut(s)	492, 772, 1216, 1396, 1408, 1468
Hpy188I	TCNGA	1 cut(s)	1568
Hpy188III	TCNNGA	6 cut(s)	626, 1110, 1422, 1508, 1639, 1721
Hpy8I	GTNNAC	6 cut(s)	492, 772, 1216, 1396, 1408, 1468
Hpy99I	CGWCG	3 cut(s)	257, 373, 1640
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	5 cut(s)	268, 300, 1208, 1450, 1734
HpyCH4IV	ACGT	3 cut(s)	327, 762, 1181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 285, 869, 1622
HpyF3I	CTNAG	4 cut(s)	858, 1565, 1649, 1680
HpySE526I	ACGT	3 cut(s)	327, 762, 1181
HspAI	GCGC	5 cut(s)	8, 284, 286, 336, 387
KroI	GCCGGC	3 cut(s)	10, 389, 597
KroNI	GCCGGC	3 cut(s)	12, 391, 599
Ksp22I	TGATCA	2 cut(s)	573, 1281
Kzo9I	GATC	3 cut(s)	573, 1281, 1695
LmnI	GCTCC	4 cut(s)	701, 1066, 1388, 1432
Lsp1109I	GCAGC	4 cut(s)	17, 1212, 1392, 1663
LweI	GCATC	4 cut(s)	502, 808, 1215, 1367
MaeI	CTAG	2 cut(s)	1100, 1520
MaeII	ACGT	3 cut(s)	327, 762, 1181
MaeIII	GTNAC	2 cut(s)	661, 1146
MalI	GATC	3 cut(s)	575, 1283, 1697
MbiI	CCGCTC	2 cut(s)	518, 1307
MboI	GATC	3 cut(s)	573, 1281, 1695
MboII	GAAGA	9 cut(s)	250, 337, 419, 675, 941, 1493, 1553, 1654, 1709
MfeI	CAATTG	1 cut(s)	419
MhlI	GDGCHC	6 cut(s)	86, 679, 946, 1410, 1605, 1763
MluI	ACGCGT	1 cut(s)	987
MlyI	GAGTC	1 cut(s)	1253
MmeI	TCCRAC	1 cut(s)	1753
MroNI	GCCGGC	3 cut(s)	10, 389, 597
MslI	CAYNNNNRTG	7 cut(s)	464, 485, 732, 920, 1209, 1223, 1391
MspCI	CTTAAG	1 cut(s)	1333
MspI	CCGG	7 cut(s)	11, 245, 390, 523, 598, 1374, 1620
MspR9I	CCNGG	8 cut(s)	245, 524, 812, 1065, 1374, 1460, 1620, 1621
MunI	CAATTG	1 cut(s)	419
MvaI	CCWGG	3 cut(s)	812, 1065, 1460
MvnI	CGCG	5 cut(s)	276, 284, 286, 989, 1635
MwoI	GCNNNNNNNGC	4 cut(s)	11, 285, 869, 1622
NaeI	GCCGGC	3 cut(s)	12, 391, 599
NciI	CCSGG	5 cut(s)	245, 524, 1374, 1620, 1621
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	3 cut(s)	573, 1281, 1695
NgoMIV	GCCGGC	3 cut(s)	10, 389, 597
NlaIV	GGNNCC	1 cut(s)	1736
NsbI	TGCGCA	1 cut(s)	337
NspI	RCATGY	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	834
PauI	GCGCGC	1 cut(s)	284
PciI	ACATGT	1 cut(s)	789
PdiI	GCCGGC	3 cut(s)	12, 391, 599
PfeI	GAWTC	1 cut(s)	1369
PflFI	GACNNNGTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	1173
PfoI	TCCNGGA	1 cut(s)	1372
PkrI	GCNGC	6 cut(s)	7, 278, 517, 1202, 1382, 1678
PleI	GAGTC	1 cut(s)	1253
PpsI	GAGTC	1 cut(s)	1253
PscI	ACATGT	1 cut(s)	789
Psp1406I	AACGTT	1 cut(s)	1181
Psp6I	CCWGG	3 cut(s)	810, 1063, 1458
PspGI	CCWGG	3 cut(s)	810, 1063, 1458
PspN4I	GGNNCC	1 cut(s)	1736
PstNI	CAGNNNCTG	1 cut(s)	827
PsyI	GACNNNGTC	1 cut(s)	251
PteI	GCGCGC	1 cut(s)	284
RsaI	GTAC	4 cut(s)	199, 491, 986, 1452
RsaNI	GTAC	4 cut(s)	198, 490, 985, 1451
RseI	CAYNNNNRTG	7 cut(s)	464, 485, 732, 920, 1209, 1223, 1391
SatI	GCNGC	6 cut(s)	6, 277, 516, 1201, 1381, 1677
Sau3AI	GATC	3 cut(s)	573, 1281, 1695
SchI	GAGTC	1 cut(s)	1253
ScrFI	CCNGG	8 cut(s)	245, 524, 812, 1065, 1374, 1460, 1620, 1621
SduI	GDGCHC	6 cut(s)	86, 679, 946, 1410, 1605, 1763
SfaNI	GCATC	4 cut(s)	502, 808, 1215, 1367
SfcI	CTRYAG	1 cut(s)	1033
SfuI	TTCGAA	1 cut(s)	834
SmaI	CCCGGG	1 cut(s)	1621
SmiMI	CAYNNNNRTG	7 cut(s)	464, 485, 732, 920, 1209, 1223, 1391
SmlI	CTYRAG	2 cut(s)	377, 1333
SmoI	CTYRAG	2 cut(s)	377, 1333
SsiI	CCGC	6 cut(s)	276, 516, 1228, 1307, 1463, 1633
SspMI	CTAG	2 cut(s)	1100, 1520
StyD4I	CCNGG	8 cut(s)	243, 522, 810, 1063, 1372, 1458, 1618, 1619
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	5 cut(s)	268, 300, 1208, 1450, 1734
TaiI	ACGT	3 cut(s)	330, 765, 1184
TaqI	TCGA	9 cut(s)	86, 185, 228, 304, 589, 625, 834, 1289, 1720
TaqII	GACCGA	1 cut(s)	1095
TatI	WGTACW	2 cut(s)	489, 1450
TauI	GCSGC	2 cut(s)	279, 518
TfiI	GAWTC	1 cut(s)	1369
TscAI	CASTG	3 cut(s)	781, 786, 828
TseI	GCWGC	4 cut(s)	5, 1200, 1380, 1676
TspDTI	ATGAA	5 cut(s)	675, 744, 950, 1126, 1517
TspGWI	ACGGA	2 cut(s)	142, 1255
TspMI	CCCGGG	1 cut(s)	1619
TspRI	CASTG	3 cut(s)	781, 786, 828
Tth111I	GACNNNGTC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	1173
Vha464I	CTTAAG	1 cut(s)	1333
VneI	GTGCAC	1 cut(s)	1406
XapI	RAATTY	2 cut(s)	234, 1412
XceI	RCATGY	1 cut(s)	793
XmaI	CCCGGG	1 cut(s)	1619
XmiI	GTMKAC	1 cut(s)	1215
XspI	CTAG	2 cut(s)	1100, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.