Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Reverse (-)

899690 .. 900999

Gene Structure 1310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATAGCAAGGTGTTCTCTTTTTCCGCCGCCGTGTTTCTCCGCCGTGAGGATTAGATGTTTCGCCGGAGAAACTTCAGATACTGGGATTCTATTCCGGGAGAAGCTTATTTACCTTCAAGACCTTAACGTAGATCCTCACAAAGCTCTCCGAGTAAACCCATCTCTCCGTTCTGCTCCAATCTCCTCCGTCGTCTCCGTCGAGACTCTACTCTCTTCCACCGGACTCTCAAGACCCGCCGTTGGTCGTATCCTCGACATGTTTCCAGATTTGTTAACTTCTGATCCTGAATCTGAAATCTTACCAGTTCTTCGCTTCTTATCCAATGAGATTTCAATTTCAGAGCAAGACATACCTAAATCGATCTCTCGTTGTCCTCGATTGCTAATTTCATCTGTAGATTATCAGCTTCGTCCTGCATTAACGTTCCTCAAAACCCTAGGATTCGTGGGTCGCGACACGATTACGTCACGGAACACGGTGTTGCTTGTATCGAATGTGGAACGAACCCTAATCCCCAAAATTGAGTATCTTGAAGAAGGGTTAGGGTTTACAAGAGAAGAAGTAGCGAAGATGGTTGTGAGATCTCCGGCGTTGTTGACTTATAGTGTTGATAACAATTTAGTTCCTAAAGTTGAGTTTTTTATTGAGGAGATGCGTGGAGATGTTAAGGAGCTGAAACGTTTCCCTCAGTATTTTTCGTTTAGCTTGGAGAGGAAGATAAAGCCAAGGCATAGATTGCTTAAGGAACATGGGATTTTGATGCCTTTGTCTGAGATGTTGAAGGTTAGTGATGGTCAGTTTAACCATTGGCTTTTAGAACTTCGTCTTAGGTCTGCTGAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

283

Amino Acids

32.26

Weight (kDa)

9.06

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	71 - 147	6e-08	mTERF
mTERF	PF02536	111 - 269	2.3e-35	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	456
AciI	CCGC	4 cut(s)	26, 29, 42, 237
AclI	AACGTT	2 cut(s)	425, 682
AclWI	GGATC	2 cut(s)	128, 278
AcuI	CTGAAG	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	48, 242
AflII	CTTAAG	1 cut(s)	743
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	4 cut(s)	119, 336, 536, 784
AluBI	AGCT	5 cut(s)	106, 146, 409, 676, 708
AluI	AGCT	5 cut(s)	106, 146, 409, 676, 708
Alw26I	GTCTC	2 cut(s)	197, 199
AlwI	GGATC	2 cut(s)	128, 278
AlwNI	CAGNNNCTG	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	683
AspA2I	CCTAGG	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	98
AvrII	CCTAGG	1 cut(s)	439
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BccI	CCATC	3 cut(s)	169, 568, 788
BceAI	ACGGC	3 cut(s)	16, 29, 224
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	197, 199
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	260
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	1 cut(s)	29
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	2 cut(s)	645, 753
BmuI	ACTGGG	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	439, 728
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 242
Bse1I	ACTGG	2 cut(s)	88, 305
BseCI	ATCGAT	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	439, 728
BseLI	CCNNNNNNNGG	2 cut(s)	48, 242
BseMII	CTCAG	2 cut(s)	704, 765
BseNI	ACTGG	2 cut(s)	88, 305
BseRI	GAGGAG	2 cut(s)	175, 665
Bsh1236I	CGCG	1 cut(s)	456
BshVI	ATCGAT	1 cut(s)	362
BsiSI	CCGG	4 cut(s)	66, 97, 222, 590
BslI	CCNNNNNNNGG	2 cut(s)	48, 242
BsmAI	GTCTC	2 cut(s)	197, 199
BsmBI	CGTCTC	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	133, 283, 363, 584
Bsp68I	TCGCGA	1 cut(s)	456
BspACI	CCGC	4 cut(s)	26, 29, 42, 237
BspCNI	CTCAG	2 cut(s)	703, 766
BspDI	ATCGAT	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	456
BspPI	GGATC	2 cut(s)	128, 278
BspTI	CTTAAG	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	88, 305
BssECI	CCNNGG	2 cut(s)	439, 728
BssMI	GATC	4 cut(s)	133, 283, 363, 584
BssT1I	CCWWGG	2 cut(s)	439, 728
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	220
BstAFI	CTTAAG	1 cut(s)	743
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstDEI	CTNAG	3 cut(s)	690, 774, 830
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	4 cut(s)	136, 286, 366, 587
BstMAI	GTCTC	2 cut(s)	197, 199
BstMBI	GATC	4 cut(s)	133, 283, 363, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	133, 584
BstYI	RGATCY	2 cut(s)	133, 584
Bsu15I	ATCGAT	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	362
BtuMI	TCGCGA	1 cut(s)	456
CaiI	CAGNNNCTG	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	362
CviAII	CATG	2 cut(s)	259, 752
CviJI	RGCY	7 cut(s)	106, 146, 409, 676, 708, 727, 814
CviKI_1	RGCY	7 cut(s)	106, 146, 409, 676, 708, 727, 814
DdeI	CTNAG	3 cut(s)	690, 774, 830
DpnI	GATC	4 cut(s)	135, 285, 365, 586
DpnII	GATC	4 cut(s)	133, 283, 363, 584
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
EciI	GGCGGA	2 cut(s)	15, 31
Eco130I	CCWWGG	2 cut(s)	439, 728
Eco57I	CTGAAG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	439, 728
ErhI	CCWWGG	2 cut(s)	439, 728
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	262, 755
FaiI	YATR	5 cut(s)	260, 353, 606, 735, 753
FatI	CATG	2 cut(s)	258, 751
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	1 cut(s)	29
HapII	CCGG	4 cut(s)	66, 97, 222, 590
Hin1II	CATG	2 cut(s)	262, 755
HincII	GTYRAC	2 cut(s)	276, 600
HindII	GTYRAC	2 cut(s)	276, 600
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	5 cut(s)	88, 205, 225, 290, 444
HpaI	GTTAAC	1 cut(s)	276
HpaII	CCGG	4 cut(s)	66, 97, 222, 590
Hpy166II	GTNNAC	4 cut(s)	157, 276, 552, 600
Hpy188I	TCNGA	6 cut(s)	79, 152, 283, 295, 343, 775
Hpy188III	TCNNGA	7 cut(s)	119, 202, 231, 266, 287, 455, 533
Hpy8I	GTNNAC	4 cut(s)	157, 276, 552, 600
Hpy99I	CGWCG	2 cut(s)	194, 203
HpyAV	CCTTC	3 cut(s)	125, 533, 778
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	4 cut(s)	129, 425, 467, 682
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
HpyF3I	CTNAG	3 cut(s)	690, 774, 830
HpySE526I	ACGT	4 cut(s)	129, 425, 467, 682
Hsp92II	CATG	2 cut(s)	262, 755
KspAI	GTTAAC	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	133, 283, 363, 584
LmnI	GCTCC	2 cut(s)	181, 673
LpnPI	CCDG	9 cut(s)	69, 79, 110, 235, 279, 300, 318, 429, 603
LweI	GCATC	2 cut(s)	645, 753
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	4 cut(s)	129, 425, 467, 682
MaeIII	GTNAC	1 cut(s)	468
MalI	GATC	4 cut(s)	135, 285, 365, 586
MboI	GATC	4 cut(s)	133, 283, 363, 584
MboII	GAAGA	6 cut(s)	207, 302, 548, 572, 583, 730
MflI	RGATCY	2 cut(s)	133, 584
MluCI	AATT	4 cut(s)	336, 387, 522, 619
MlyI	GAGTC	2 cut(s)	199, 219
MnlI	CCTC	9 cut(s)	42, 147, 196, 263, 387, 440, 643, 699, 708
MroXI	GAANNNNTTC	1 cut(s)	683
MseI	TTAA	6 cut(s)	126, 275, 422, 669, 744, 804
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	4 cut(s)	66, 97, 222, 590
MspR9I	CCNGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	739
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	133, 283, 363, 584
NlaIII	CATG	2 cut(s)	262, 755
NmuCI	GTSAC	1 cut(s)	468
NruI	TCGCGA	1 cut(s)	456
NspI	RCATGY	1 cut(s)	262
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	3 cut(s)	198, 376, 453
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	88, 290, 444
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	2 cut(s)	199, 219
PpsI	GAGTC	2 cut(s)	199, 219
PscI	ACATGT	1 cut(s)	258
Psp1406I	AACGTT	2 cut(s)	425, 682
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	133, 584
RruI	TCGCGA	1 cut(s)	456
SaqAI	TTAA	6 cut(s)	126, 275, 422, 669, 744, 804
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	4 cut(s)	133, 283, 363, 584
SchI	GAGTC	2 cut(s)	199, 219
ScrFI	CCNGG	1 cut(s)	98
SfaNI	GCATC	2 cut(s)	645, 753
SfcI	CTRYAG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	229, 743
SmoI	CTYRAG	2 cut(s)	229, 743
Sse9I	AATT	4 cut(s)	336, 387, 522, 619
SsiI	CCGC	4 cut(s)	26, 29, 42, 237
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	2 cut(s)	439, 728
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	4 cut(s)	132, 428, 470, 685
TaqI	TCGA	5 cut(s)	201, 255, 362, 379, 494
TasI	AATT	4 cut(s)	336, 387, 522, 619
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	88, 290, 444
Tru1I	TTAA	6 cut(s)	126, 275, 422, 669, 744, 804
Tru9I	TTAA	6 cut(s)	126, 275, 422, 669, 744, 804
TseFI	GTSAC	1 cut(s)	468
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	4 cut(s)	158, 178, 187, 487
Vha464I	CTTAAG	1 cut(s)	743
XceI	RCATGY	1 cut(s)	262
XmaJI	CCTAGG	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.