Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Forward (+)

30425277 .. 30426385

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACACTCCGACCTCACACTCTCTTCCTCCCTCAAGCCTCCCTAACCCCATCTCCTAAACCCTCCTTCACCCCCAAACCCCACTCCAACTCCTTCACCCCAATTCTCAATTCCCCAAACTACCCCTCCCTCTCCCTCCACTCCCCCACCGACTCCGGCCTCCTCTTCCGCGAAAAGCTCGTCTACCTCGAAACCCACCTCAACGTAAATCCCCAAAAAGCCCTCCTCAAAAACCCCGACTTCCGCTCCTGCCCCCTCTCCTCCATCATCTCCGTCGAGCACTGCCTCTCCTCCATGGGCATCGAGCGCTCCGCCATGGGCCGCATCCTCGACATGCACCCGGAGCTCCTCACCGCCGACCCCCACCTCCGCCTCTACCCCGTCTTCGACTTCCTCCTCCACGACGCCCGCATCCCCTTCCCCGATATCCGCAAGTCCGTCGTCCGCTGCCCCCGCCTCCTCGTATGTGACGTCACCACCCAGCTCCGCCCCGCGTTGCTCTTCCTCACCCAGCTCGGCTTGCGCGTCACCTGCCAGACCACGGTTTTATTAGTCTCGAGCGTGAAGGGCACGCTCGTTCCGAAGATTGAGTATTTGGAGAGCCTGGGGTTGGGTCATGCGGATGTTGTTAATATGGTGATAAGGTCGCCGGCGCTGTTGACGCTTAGTATACGGAATAATTTCGTGCCGAAGGTGGAGTATTTGTTGGGGGAGATGAAGAGGGATGTGAAGGAGCTGAAGAGGTTTCCGCAGTACTTTTCGTTTAGTTTGGAGGGGAAGATCAAGCCAAGGCATAGGTTGTTGGTTGAGCACGGGTTTTCGCTTCCGTTGAGGGAGATGTTGAGGGTTAGTGACGGCGAGTTTAATGCTATGTTGATTGAGATGCGGTTGGATCGCAGGGGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

303

Amino Acids

34.26

Weight (kDa)

9.53

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	143 - 288	5.4e-28	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	539
AatII	GACGTC	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	246
AccI	GTMKAC	2 cut(s)	183, 670
AccII	CGCG	3 cut(s)	171, 494, 525
AclWI	GGATC	1 cut(s)	900
AcuI	CTGAAG	1 cut(s)	758
AcyI	GRCGYC	2 cut(s)	405, 471
AfaI	GTAC	1 cut(s)	755
AfeI	AGCGCT	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	541, 610
AjnI	CCWGG	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	5 cut(s)	178, 346, 484, 514, 736
AluI	AGCT	5 cut(s)	178, 346, 484, 514, 736
Alw21I	GWGCWC	3 cut(s)	282, 348, 813
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	1 cut(s)	900
Ama87I	CYCGRG	1 cut(s)	556
Aor51HI	AGCGCT	1 cut(s)	308
AoxI	GGCC	2 cut(s)	157, 319
ApeKI	GCWGC	1 cut(s)	447
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	3 cut(s)	309, 525, 655
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	7 cut(s)	61, 88, 343, 466, 499, 520, 649
AvaI	CYCGRG	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	3 cut(s)	282, 348, 813
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	2 cut(s)	58, 272
BceAI	ACGGC	1 cut(s)	871
BcgI	CGANNNNNNTGC	4 cut(s)	421, 455, 848, 882
BciT130I	CCWGG	1 cut(s)	605
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	559
BfoI	RGCGCY	2 cut(s)	310, 656
BfuAI	ACCTGC	1 cut(s)	539
BisI	GCNGC	2 cut(s)	322, 448
BlsI	GCNGC	2 cut(s)	323, 449
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	2 cut(s)	341, 605
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	341, 605
BmsI	GCATC	4 cut(s)	309, 333, 420, 873
BpiI	GAAGAC	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	405, 471
BsaJI	CCNNGG	5 cut(s)	294, 315, 540, 604, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 610
Bse118I	RCCGGY	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	5 cut(s)	294, 315, 540, 604, 788
BseGI	GGATG	4 cut(s)	324, 411, 628, 730
BseLI	CCNNNNNNNGG	2 cut(s)	541, 610
BseRI	GAGGAG	7 cut(s)	152, 215, 250, 280, 338, 386, 449
BseSI	GKGCMC	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	434
BseYI	CCCAGC	2 cut(s)	480, 510
Bsh1236I	CGCG	3 cut(s)	171, 494, 525
BshFI	GGCC	2 cut(s)	159, 321
BsiHKAI	GWGCWC	3 cut(s)	282, 348, 813
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	3 cut(s)	156, 341, 650
BslI	CCNNNNNNNGG	2 cut(s)	541, 610
BsmAI	GTCTC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	159, 321
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	4 cut(s)	282, 348, 572, 813
Bsp143I	GATC	2 cut(s)	780, 892
Bsp19I	CCATGG	2 cut(s)	294, 315
BspANI	GGCC	2 cut(s)	159, 321
BspFNI	CGCG	3 cut(s)	171, 494, 525
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	1 cut(s)	900
BspQI	GCTCTTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	5 cut(s)	294, 315, 540, 604, 788
BssMI	GATC	2 cut(s)	780, 892
BssNAI	GTATAC	1 cut(s)	671
BssNI	GRCGYC	2 cut(s)	405, 471
BssT1I	CCWWGG	3 cut(s)	294, 315, 788
Bst1107I	GTATAC	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	5 cut(s)	29, 170, 506, 713, 734
BstACI	GRCGYC	2 cut(s)	405, 471
BstC8I	GCNNGC	4 cut(s)	409, 521, 572, 651
BstDEI	CTNAG	1 cut(s)	665
BstDSI	CCRYGG	3 cut(s)	294, 315, 540
BstF5I	GGATG	4 cut(s)	324, 411, 628, 730
BstFNI	CGCG	3 cut(s)	171, 494, 525
BstH2I	RGCGCY	2 cut(s)	310, 656
BstHHI	GCGC	3 cut(s)	309, 525, 655
BstKTI	GATC	2 cut(s)	783, 895
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	2 cut(s)	780, 892
BstMWI	GCNNNNNNNGC	7 cut(s)	306, 343, 453, 520, 531, 567, 661
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	2 cut(s)	339, 603
BstSLI	GKGCMC	1 cut(s)	572
BstUI	CGCG	3 cut(s)	171, 494, 525
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	1 cut(s)	376
BstZ17I	GTATAC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	159, 321
BtgI	CCRYGG	3 cut(s)	294, 315, 540
BtsCI	GGATG	4 cut(s)	324, 411, 628, 730
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	4 cut(s)	409, 521, 572, 651
CfoI	GCGC	3 cut(s)	309, 525, 655
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	3 cut(s)	413, 514, 670
Csp6I	GTAC	1 cut(s)	754
CviAII	CATG	4 cut(s)	295, 316, 334, 617
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	2 cut(s)	782, 894
DpnII	GATC	2 cut(s)	780, 892
Eam1104I	CTCTTC	5 cut(s)	29, 170, 506, 713, 734
EarI	CTCTTC	5 cut(s)	29, 170, 506, 713, 734
EciI	GGCGGA	3 cut(s)	301, 359, 476
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	3 cut(s)	294, 315, 788
Eco24I	GRGCYC	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	427
Eco47III	AGCGCT	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	758
Eco88I	CYCGRG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	603
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	3 cut(s)	294, 315, 788
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	3 cut(s)	294, 315, 788
FaeI	CATG	4 cut(s)	298, 319, 337, 620
FaiI	YATR	9 cut(s)	296, 317, 335, 466, 618, 635, 671, 795, 872
FatI	CATG	4 cut(s)	294, 315, 333, 616
FauI	CCCGC	3 cut(s)	416, 461, 499
FblI	GTMKAC	2 cut(s)	183, 670
Fnu4HI	GCNGC	2 cut(s)	322, 448
FokI	GGATG	4 cut(s)	311, 398, 635, 737
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	2 cut(s)	322, 448
GlaI	GCGC	3 cut(s)	308, 524, 654
GluI	GCNGC	2 cut(s)	322, 448
GsaI	CCCAGC	2 cut(s)	484, 514
HaeII	RGCGCY	2 cut(s)	310, 656
HaeIII	GGCC	2 cut(s)	159, 321
HapII	CCGG	3 cut(s)	156, 341, 650
HgaI	GACGC	3 cut(s)	413, 514, 670
HhaI	GCGC	3 cut(s)	309, 525, 655
Hin1I	GRCGYC	2 cut(s)	405, 471
Hin1II	CATG	4 cut(s)	298, 319, 337, 620
Hin6I	GCGC	3 cut(s)	307, 523, 653
HinP1I	GCGC	3 cut(s)	307, 523, 653
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	3 cut(s)	156, 341, 650
HphI	GGTGA	7 cut(s)	61, 88, 343, 466, 499, 520, 649
Hpy166II	GTNNAC	3 cut(s)	184, 660, 671
Hpy188I	TCNGA	2 cut(s)	11, 582
Hpy188III	TCNNGA	1 cut(s)	556
Hpy8I	GTNNAC	3 cut(s)	184, 660, 671
Hpy99I	CGWCG	3 cut(s)	278, 407, 443
HpyAV	CCTTC	6 cut(s)	76, 103, 427, 559, 685, 724
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	2 cut(s)	204, 471
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	7 cut(s)	306, 343, 453, 520, 531, 567, 661
HpyF3I	CTNAG	1 cut(s)	665
HpySE526I	ACGT	2 cut(s)	204, 471
Hsp92I	GRCGYC	2 cut(s)	405, 471
Hsp92II	CATG	4 cut(s)	298, 319, 337, 620
HspAI	GCGC	3 cut(s)	307, 523, 653
KroI	GCCGGC	1 cut(s)	649
KroNI	GCCGGC	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	780, 892
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	6 cut(s)	251, 314, 343, 351, 489, 733
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	4 cut(s)	309, 333, 420, 873
MaeII	ACGT	2 cut(s)	204, 471
MaeIII	GTNAC	4 cut(s)	467, 472, 526, 851
MalI	GATC	2 cut(s)	782, 894
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	2 cut(s)	780, 892
MboII	GAAGA	8 cut(s)	16, 157, 376, 493, 595, 730, 751, 790
MhlI	GDGCHC	4 cut(s)	282, 348, 572, 813
MluCI	AATT	3 cut(s)	102, 109, 679
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	3 cut(s)	34, 111, 870
MreI	CGCCGGCG	1 cut(s)	649
MroNI	GCCGGC	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	2 cut(s)	630, 864
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	3 cut(s)	156, 341, 650
MspR9I	CCNGG	2 cut(s)	341, 605
MvaI	CCWGG	1 cut(s)	605
MvnI	CGCG	3 cut(s)	171, 494, 525
MwoI	GCNNNNNNNGC	7 cut(s)	306, 343, 453, 520, 531, 567, 661
NaeI	GCCGGC	1 cut(s)	651
NciI	CCSGG	1 cut(s)	341
NcoI	CCATGG	2 cut(s)	294, 315
NdeII	GATC	2 cut(s)	780, 892
NgoMIV	GCCGGC	1 cut(s)	649
NlaIII	CATG	4 cut(s)	298, 319, 337, 620
NmeAIII	GCCGAG	1 cut(s)	495
NmuCI	GTSAC	4 cut(s)	467, 472, 526, 851
NspI	RCATGY	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	556
PaqCI	CACCTGC	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	4 cut(s)	186, 468, 522, 578
PdiI	GCCGGC	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	680
PkrI	GCNGC	2 cut(s)	323, 449
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	603
PspFI	CCCAGC	2 cut(s)	480, 510
PspGI	CCWGG	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	630, 864
SatI	GCNGC	2 cut(s)	322, 448
Sau3AI	GATC	2 cut(s)	780, 892
Sau96I	GGNCC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	755
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	341, 605
SduI	GDGCHC	4 cut(s)	282, 348, 572, 813
SfaNI	GCATC	4 cut(s)	309, 333, 420, 873
Sfr274I	CTCGAG	1 cut(s)	556
SgrAI	CRCCGGYG	1 cut(s)	649
SlaI	CTCGAG	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	2 cut(s)	33, 556
SmoI	CTYRAG	2 cut(s)	33, 556
Sse9I	AATT	3 cut(s)	102, 109, 679
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	339, 603
StyI	CCWWGG	3 cut(s)	294, 315, 788
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	2 cut(s)	207, 474
TaqI	TCGA	6 cut(s)	189, 276, 303, 330, 387, 557
TasI	AATT	3 cut(s)	102, 109, 679
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	630, 864
Tru9I	TTAA	2 cut(s)	630, 864
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	4 cut(s)	467, 472, 526, 851
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	4 cut(s)	467, 472, 526, 851
TspDTI	ATGAA	1 cut(s)	731
TspGWI	ACGGA	4 cut(s)	262, 427, 688, 816
TspRI	CASTG	1 cut(s)	287
XceI	RCATGY	1 cut(s)	337
XhoI	CTCGAG	1 cut(s)	556
XmiI	GTMKAC	2 cut(s)	183, 670
XmnI	GAANNNNTTC	1 cut(s)	680
ZraI	GACGTC	1 cut(s)	472
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.