Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Forward (+)

59492416 .. 59496962

Gene Structure 4547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG377400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACACTCCGACCTCACACTCTCTTCCTCCCTCAAGCCTCCTTAACCCCCCCACCTCCTAAACCCTCCAAAAACCCTTCCAACTCCTTCACCCCAACTCTCAATTCCCCAATCTACCCCTCCCTCTCCCTCCACCACCACCACCCAACCACCCCCACCGACTCCGGCATCCTCTTCCGCGAAAAGCTCATCTACCTCGAAAGCCACCTCAACGTCAATCCCCAAAAAGCCCTCCATCTAAACCCCGACTTCCGCTCCTGCCCCCTCTCCTCCGTCAAGTCCGTCGAGCACTGCCTCTCCTCCATGGGCATCGAGCTCTCCGCCATGGGCCGCATCCTCGACATGCACCCCCAGCTCCTCACCGTGGACCCCCACTCCCACCTCTACCCCGTCTTCGACTTCCTCCTCCACGACGCCCATATCCCCTTCCACGATATCCGCAAGTCCATCGTCCGCTGCCCCAGGCTCCTCGTCTGTGACGTCAGCAACCAACTCCGACCCGCCTTGGAGTTCCTGGCCCAACTAGGTTTTAAGGGCGTGACGTGCCAGACCACGGTCCTATTGGTCTCGAGCGTCAGAGGTACCCTTTTGCCCAAGATTGAGTATTTGCAGAGTCTGGGGCTGAGTCACGCGGAGGTGGCCAACATGGTGATAAGGTCGCCGGCGCTGTTGACTCTCAGCATACACAACAATTTCATGCCGAAAGTCGAGTATTTAGTGCAAGAGATGAAGAAAGATGTGAAGGAGCTCAAGAGGTTTCCGCAGTACTTTTCGTTTAGTTTGGAGGGGAGGATTAAGCCTAGGCACAGATTGTTGGCTGAGCACGGCTTTTCGCTTCCGTTGAGGGACATGTTGAGGGTTAGTGATGGCGAGTTTAATGCTATGTTGATTGAGATGCGATTGGATTGCACAGGCTTGAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

308

Amino Acids

34.85

Weight (kDa)

8.88

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	97 - 177	1e-05	mTERF
mTERF	PF02536	145 - 292	4.5e-32	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AccBSI	CCGCTC	1 cut(s)	255
AccII	CGCG	2 cut(s)	180, 632
AciI	CCGC	9 cut(s)	178, 253, 321, 331, 439, 454, 501, 632, 761
AcoI	YGGCCR	1 cut(s)	639
AcyI	GRCGYC	2 cut(s)	414, 480
AfaI	GTAC	2 cut(s)	583, 767
AfiI	CCNNNNNNNGG	2 cut(s)	364, 553
AflIII	ACRYGT	1 cut(s)	849
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	2 cut(s)	461, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	4 cut(s)	187, 316, 355, 748
AluI	AGCT	4 cut(s)	187, 316, 355, 748
Alw21I	GWGCWC	4 cut(s)	291, 318, 750, 825
Alw26I	GTCTC	1 cut(s)	571
AlwNI	CAGNNNCTG	1 cut(s)	616
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	3 cut(s)	328, 516, 639
ApeKI	GCWGC	1 cut(s)	456
Asp718I	GGTACC	1 cut(s)	581
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	4 cut(s)	328, 367, 517, 556
AsuHPI	GGTGA	3 cut(s)	82, 352, 661
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	367, 556
AvrII	CCTAGG	1 cut(s)	800
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	2 cut(s)	318, 750
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	4 cut(s)	291, 318, 750, 825
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	243, 455, 860
BceAI	ACGGC	1 cut(s)	841
BcgI	CGANNNNNNTGC	6 cut(s)	430, 464, 860, 888, 894, 922
BciT130I	CCWGG	2 cut(s)	463, 515
BcoDI	GTCTC	1 cut(s)	571
BfaI	CTAG	2 cut(s)	524, 801
BfoI	RGCGCY	1 cut(s)	668
BisI	GCNGC	2 cut(s)	331, 457
BlnI	CCTAGG	1 cut(s)	800
BlpI	GCTNAGC	1 cut(s)	819
BlsI	GCNGC	2 cut(s)	332, 458
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	2 cut(s)	463, 515
Bme18I	GGWCC	2 cut(s)	367, 556
BmeT110I	CYCGRG	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	543
BmgT120I	GGNCC	4 cut(s)	328, 367, 517, 556
BmiI	GGNNCC	3 cut(s)	369, 467, 583
BmrFI	CCNGG	2 cut(s)	463, 515
BmsI	GCATC	4 cut(s)	177, 318, 342, 885
BoxI	GACNNNNGTC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	385
Bpu1102I	GCTNAGC	1 cut(s)	819
BpuEI	CTTGAG	2 cut(s)	18, 734
BsaHI	GRCGYC	2 cut(s)	414, 480
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	7 cut(s)	303, 324, 363, 461, 504, 552, 800
BsaXI	ACNNNNNCTCC	6 cut(s)	239, 269, 281, 311, 359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 553
Bse118I	RCCGGY	1 cut(s)	661
BseBI	CCWGG	2 cut(s)	463, 515
BseDI	CCNNGG	7 cut(s)	303, 324, 363, 461, 504, 552, 800
BseGI	GGATG	2 cut(s)	168, 333
BseLI	CCNNNNNNNGG	2 cut(s)	364, 553
BseMII	CTCAG	3 cut(s)	614, 691, 810
BseRI	GAGGAG	5 cut(s)	259, 289, 347, 395, 458
BseXI	GCAGC	1 cut(s)	443
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	180, 632
BshFI	GGCC	3 cut(s)	330, 518, 641
BshNI	GGYRCC	1 cut(s)	581
BsiHKAI	GWGCWC	4 cut(s)	291, 318, 750, 825
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	165, 662
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	2 cut(s)	364, 553
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	860
BsnI	GGCC	3 cut(s)	330, 518, 641
Bso31I	GGTCTC	1 cut(s)	571
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	4 cut(s)	291, 318, 750, 825
Bsp1720I	GCTNAGC	1 cut(s)	819
Bsp19I	CCATGG	2 cut(s)	303, 324
BspACI	CCGC	9 cut(s)	178, 253, 321, 331, 439, 454, 501, 632, 761
BspANI	GGCC	3 cut(s)	330, 518, 641
BspCNI	CTCAG	3 cut(s)	615, 690, 811
BspFNI	CGCG	2 cut(s)	180, 632
BspLI	GGNNCC	3 cut(s)	369, 467, 583
BspT107I	GGYRCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	571
BsrBI	CCGCTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	661
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	7 cut(s)	303, 324, 363, 461, 504, 552, 800
BssNI	GRCGYC	2 cut(s)	414, 480
BssT1I	CCWWGG	4 cut(s)	303, 324, 504, 800
Bst2UI	CCWGG	2 cut(s)	463, 515
Bst4CI	ACNGT	2 cut(s)	364, 556
Bst6I	CTCTTC	2 cut(s)	29, 179
BstACI	GRCGYC	2 cut(s)	414, 480
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	623, 677, 819
BstDSI	CCRYGG	4 cut(s)	303, 324, 363, 552
BstF5I	GGATG	2 cut(s)	168, 333
BstFNI	CGCG	2 cut(s)	180, 632
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	667
BstMAI	GTCTC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 543, 638
BstNI	CCWGG	2 cut(s)	463, 515
BstNSI	RCATGY	2 cut(s)	346, 853
BstPAI	GACNNNNGTC	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	461, 513
BstUI	CGCG	2 cut(s)	180, 632
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	330, 518, 641
BtgI	CCRYGG	4 cut(s)	303, 324, 363, 552
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	168, 333
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	663
CaiI	CAGNNNCTG	1 cut(s)	616
CfoI	GCGC	1 cut(s)	667
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	4 cut(s)	328, 367, 517, 556
CseI	GACGC	2 cut(s)	422, 562
Csp6I	GTAC	2 cut(s)	582, 766
CviAII	CATG	6 cut(s)	304, 325, 343, 646, 697, 850
CviQI	GTAC	2 cut(s)	582, 766
DdeI	CTNAG	3 cut(s)	623, 677, 819
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	2 cut(s)	29, 179
EarI	CTCTTC	2 cut(s)	29, 179
EciI	GGCGGA	1 cut(s)	310
Ecl136II	GAGCTC	2 cut(s)	316, 748
Eco130I	CCWWGG	4 cut(s)	303, 324, 504, 800
Eco24I	GRGCYC	2 cut(s)	318, 750
Eco31I	GGTCTC	1 cut(s)	571
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	2 cut(s)	367, 556
Eco53kI	GAGCTC	2 cut(s)	316, 748
Eco88I	CYCGRG	1 cut(s)	568
EcoICRI	GAGCTC	2 cut(s)	316, 748
EcoRII	CCWGG	2 cut(s)	461, 513
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	4 cut(s)	303, 324, 504, 800
EcoT38I	GRGCYC	2 cut(s)	318, 750
ErhI	CCWWGG	4 cut(s)	303, 324, 504, 800
FaeI	CATG	6 cut(s)	307, 328, 346, 649, 700, 853
FaiI	YATR	9 cut(s)	305, 326, 344, 420, 647, 683, 698, 851, 884
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	6 cut(s)	303, 324, 342, 645, 696, 849
FauI	CCCGC	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	331, 457
FokI	GGATG	2 cut(s)	155, 320
FriOI	GRGCYC	2 cut(s)	318, 750
Fsp4HI	GCNGC	2 cut(s)	331, 457
FspBI	CTAG	2 cut(s)	524, 801
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	2 cut(s)	331, 457
GsaI	CCCAGC	1 cut(s)	355
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	3 cut(s)	330, 518, 641
HapII	CCGG	2 cut(s)	165, 662
HgaI	GACGC	2 cut(s)	422, 562
HhaI	GCGC	1 cut(s)	667
Hin1I	GRCGYC	2 cut(s)	414, 480
Hin1II	CATG	6 cut(s)	307, 328, 346, 649, 700, 853
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	5 cut(s)	161, 613, 625, 673, 919
HpaII	CCGG	2 cut(s)	165, 662
HphI	GGTGA	3 cut(s)	82, 352, 661
Hpy166II	GTNNAC	2 cut(s)	367, 672
Hpy188I	TCNGA	3 cut(s)	11, 497, 578
Hpy188III	TCNNGA	2 cut(s)	568, 751
Hpy8I	GTNNAC	2 cut(s)	367, 672
Hpy99I	CGWCG	2 cut(s)	287, 416
HpyAV	CCTTC	4 cut(s)	87, 97, 436, 736
HpyCH4III	ACNGT	2 cut(s)	364, 556
HpyCH4IV	ACGT	3 cut(s)	213, 480, 542
HpyCH4V	TGCA	4 cut(s)	346, 610, 721, 909
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 543, 638
HpyF3I	CTNAG	3 cut(s)	623, 677, 819
HpySE526I	ACGT	3 cut(s)	213, 480, 542
Hsp92I	GRCGYC	2 cut(s)	414, 480
Hsp92II	CATG	6 cut(s)	307, 328, 346, 649, 700, 853
HspAI	GCGC	1 cut(s)	665
KpnI	GGTACC	1 cut(s)	585
KroI	GCCGGC	1 cut(s)	661
KroNI	GCCGGC	1 cut(s)	663
LmnI	GCTCC	4 cut(s)	260, 360, 471, 745
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	4 cut(s)	177, 318, 342, 885
MaeI	CTAG	2 cut(s)	524, 801
MaeII	ACGT	3 cut(s)	213, 480, 542
MaeIII	GTNAC	3 cut(s)	476, 538, 626
MbiI	CCGCTC	1 cut(s)	255
MboII	GAAGA	4 cut(s)	16, 166, 385, 742
MhlI	GDGCHC	4 cut(s)	291, 318, 750, 825
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	2 cut(s)	103, 691
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	4 cut(s)	155, 622, 634, 667
MmeI	TCCRAC	3 cut(s)	34, 105, 520
Mox20I	TGGCCA	1 cut(s)	641
MreI	CGCCGGCG	1 cut(s)	661
MroNI	GCCGGC	1 cut(s)	661
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	5 cut(s)	44, 531, 795, 876, 925
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	2 cut(s)	165, 662
MspR9I	CCNGG	2 cut(s)	463, 515
MvaI	CCWGG	2 cut(s)	463, 515
MvnI	CGCG	2 cut(s)	180, 632
MwoI	GCNNNNNNNGC	3 cut(s)	352, 543, 638
NaeI	GCCGGC	1 cut(s)	663
NcoI	CCATGG	2 cut(s)	303, 324
NgoMIV	GCCGGC	1 cut(s)	661
NlaIII	CATG	6 cut(s)	307, 328, 346, 649, 700, 853
NlaIV	GGNNCC	3 cut(s)	369, 467, 583
NmuCI	GTSAC	3 cut(s)	476, 538, 626
NspI	RCATGY	2 cut(s)	346, 853
PaeR7I	CTCGAG	1 cut(s)	568
PciI	ACATGT	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PdiI	GCCGGC	1 cut(s)	663
PkrI	GCNGC	2 cut(s)	332, 458
PleI	GAGTC	4 cut(s)	155, 621, 633, 667
PpsI	GAGTC	4 cut(s)	155, 621, 633, 667
PscI	ACATGT	1 cut(s)	849
PshAI	GACNNNNGTC	1 cut(s)	554
Psp124BI	GAGCTC	2 cut(s)	318, 750
Psp6I	CCWGG	2 cut(s)	461, 513
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	2 cut(s)	461, 513
PspN4I	GGNNCC	3 cut(s)	369, 467, 583
PspPI	GGNCC	4 cut(s)	328, 367, 517, 556
PstNI	CAGNNNCTG	1 cut(s)	616
RsaI	GTAC	2 cut(s)	583, 767
RsaNI	GTAC	2 cut(s)	582, 766
SacI	GAGCTC	2 cut(s)	318, 750
SaqAI	TTAA	5 cut(s)	44, 531, 795, 876, 925
SatI	GCNGC	2 cut(s)	331, 457
Sau96I	GGNCC	4 cut(s)	328, 367, 517, 556
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	4 cut(s)	155, 622, 634, 667
ScrFI	CCNGG	2 cut(s)	463, 515
SduI	GDGCHC	4 cut(s)	291, 318, 750, 825
SfaNI	GCATC	4 cut(s)	177, 318, 342, 885
Sfr274I	CTCGAG	1 cut(s)	568
SgrAI	CRCCGGYG	1 cut(s)	661
SinI	GGWCC	2 cut(s)	367, 556
SlaI	CTCGAG	1 cut(s)	568
SmlI	CTYRAG	4 cut(s)	33, 568, 749, 916
SmoI	CTYRAG	4 cut(s)	33, 568, 749, 916
Sse9I	AATT	2 cut(s)	103, 691
SsiI	CCGC	9 cut(s)	178, 253, 321, 331, 439, 454, 501, 632, 761
SspMI	CTAG	2 cut(s)	524, 801
SstI	GAGCTC	2 cut(s)	318, 750
StyD4I	CCNGG	2 cut(s)	461, 513
StyI	CCWWGG	4 cut(s)	303, 324, 504, 800
TaaI	ACNGT	2 cut(s)	364, 556
TaiI	ACGT	3 cut(s)	216, 483, 545
TaqI	TCGA	7 cut(s)	198, 285, 312, 339, 396, 569, 708
TasI	AATT	2 cut(s)	103, 691
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	1 cut(s)	333
Tru1I	TTAA	5 cut(s)	44, 531, 795, 876, 925
Tru9I	TTAA	5 cut(s)	44, 531, 795, 876, 925
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	3 cut(s)	476, 538, 626
TseI	GCWGC	1 cut(s)	456
Tsp45I	GTSAC	3 cut(s)	476, 538, 626
TspDTI	ATGAA	2 cut(s)	685, 743
TspGWI	ACGGA	3 cut(s)	262, 271, 828
TspRI	CASTG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	367, 556
XceI	RCATGY	2 cut(s)	346, 853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XhoI	CTCGAG	1 cut(s)	568
XmaJI	CCTAGG	1 cut(s)	800
XspI	CTAG	2 cut(s)	524, 801
ZraI	GACGTC	1 cut(s)	481
ZrmI	AGTACT	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.