MD16G1071200.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011186
Physical Location & Seq
Forward (+)
4996991 .. 4997941
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1071200.v1.1.491

Sequence Viewer

Length: 951 bp
ATGATTCGCCATCTCCAACCTCAAACCTTCCTTCCCCAAGCTTCTCTCAGTCCAACTCCAAAACCCTCCATGAACCCTAACCCTATCCCCAAATCAATCTCCAACTCCCTCAGGCCGACTCTCAATTCGCCAAATTATCCCTCACTTTCCCACCACCCAAGCACCTCCGCCGACCCCGGCCTCCTCTTCCGCGAAAAGGTCCTCTACTTAGAAACCCACCTCAACGTCGATTCCCAAAAGGCCCTCCACCAAAACCCAGATTTCCGCTCCTGCCCCCTCTCCTCCCTCAAGTCCGTTGAGGGATGCCTCTCCTCCATGGGCATCGAGCGCTCCGCCCAGGGTCGGATCCTCGACATGTACCCACAGCTCCTCACCGTGGACCCGCACACTGCCCTCTATCCAATCTTCGATTTCCTCCTCACCGAGGTCCGAATCCCCTTTCCGGATATCCGGAAGTCCATAATCCGGTGCCCGAGGCTCCTAGTCTCCCACTTGGACTACCAATTGCGACCCGCATTGAAGTTCCTGACCGAATTGGGGTTTTCGGGGCGGAGCTCCATCACGTGCCAGACGACAGTGCTGCTGGTTTCGAGCGTGCAATTTACCCTTTTGCCCAAGATTGAGTATTTGCAGAGCTTGGGGCTGAGCTACGAGGAGGTGGTGAACATGGTGATAAGGTCGCCGGGGCTGTTGACTTTCAGCATTAACAACAATTACAAGCCGAAAGTTGACTTTTTTCTGGAGGAGATGAAGAGGGACGTGGGGGAACTGAAGAGGTTTCCGCAGTACTTTTCGTTTAGTTTGGAAGGGAAGATTAAGCCGAGGCACCGGTTGCTGGTGGAGCACGGCTTTTCGCTGCCGCTGCGGGAGATGCTGAAGGTCAGCGACGGCGAGTTTAACGCCCGGCTGATTGAGATGCGGTTGGGATCCGCGGAGGGCAGCTGGGTCTAA

Protein Analysis

317

Amino Acids

35.87

Weight (kDa)

9.11

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 149 - 299 6.4e-31 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03050 AT2G03050
fragaria_vesca FvH4_4g31180
malus_domestica MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica Prupe.1G276500_v2.0.a1
pyrus_communis pycom111g01200 pycom16g06160
rosa_chinensis RchiOBHm_Chr4g0439561
rosa_laevigata RLG00000006258
rosa_multiflora Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii Rroxscaffold_5G00380480
rosa_rugosa Rorug04G0319900
rosa_samantha Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana Rw4G031610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 468, 825
AccBSI CCGCTC 1 cut(s) 267
AccII CGCG 2 cut(s) 192, 932
AccIII TCCGGA 2 cut(s) 442, 450
AclWI GGATC 4 cut(s) 340, 353, 921, 934
AcuI CTGAAG 2 cut(s) 791, 896
AcvI CACGTG 1 cut(s) 564
AfaI GTAC 2 cut(s) 359, 788
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 8 cut(s) 196, 342, 376, 424, 442, 465, 537, 835
AflIII ACRYGT 1 cut(s) 354
AgeI ACCGGT 1 cut(s) 828
AgsI TTSAA 1 cut(s) 520
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 6 cut(s) 41, 367, 555, 636, 648, 942
AluI AGCT 6 cut(s) 41, 367, 555, 636, 648, 942
Alw21I GWGCWC 2 cut(s) 557, 846
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 4 cut(s) 340, 353, 921, 934
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 2 cut(s) 442, 450
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 3 cut(s) 113, 178, 240
ApeKI GCWGC 4 cut(s) 580, 856, 862, 939
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AsiGI ACCGGT 1 cut(s) 828
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 4 cut(s) 199, 241, 379, 427
AsuC2I CCSGG 3 cut(s) 177, 684, 904
AsuHPI GGTGA 4 cut(s) 364, 412, 673, 682
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 3 cut(s) 199, 379, 427
AxyI CCTNAGG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 473
BamHI GGATCC 2 cut(s) 345, 926
BanI GGYRCC 2 cut(s) 468, 825
BanII GRGCYC 1 cut(s) 557
BbrPI CACGTG 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 557, 846
BbvI GCAGC 3 cut(s) 567, 843, 849
BccI CCATC 2 cut(s) 18, 566
BceAI ACGGC 2 cut(s) 862, 904
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 3 cut(s) 177, 684, 904
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 5 cut(s) 581, 857, 860, 863, 940
BlpI GCTNAGC 1 cut(s) 644
BlsI GCNGC 5 cut(s) 582, 858, 861, 864, 941
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 4 cut(s) 177, 338, 684, 904
Bme18I GGWCC 3 cut(s) 199, 379, 427
BmeT110I CYCGRG 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 4 cut(s) 199, 241, 379, 427
BmiI GGNNCC 6 cut(s) 347, 381, 470, 479, 827, 928
BmrFI CCNGG 4 cut(s) 177, 338, 684, 904
BmsI GCATC 4 cut(s) 293, 330, 861, 906
BpmI CTGGAG 1 cut(s) 761
Bpu1102I GCTNAGC 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 3 cut(s) 177, 684, 904
BsaAI YACGTR 1 cut(s) 564
BsaWI WCCGGW 4 cut(s) 442, 450, 465, 828
Bsc4I CCNNNNNNNGG 8 cut(s) 196, 342, 376, 424, 442, 465, 537, 835
Bse118I RCCGGY 1 cut(s) 828
Bse21I CCTNAGG 1 cut(s) 110
BseAI TCCGGA 2 cut(s) 442, 450
BseBI CCWGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 8 cut(s) 196, 342, 376, 424, 442, 465, 537, 835
BseMII CTCAG 3 cut(s) 61, 124, 635
BseRI GAGGAG 7 cut(s) 173, 271, 301, 359, 407, 668, 758
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 3 cut(s) 567, 843, 849
BseYI CCCAGC 1 cut(s) 942
Bsh1236I CGCG 2 cut(s) 192, 932
BshFI GGCC 3 cut(s) 115, 180, 242
BshNI GGYRCC 2 cut(s) 468, 825
BshTI ACCGGT 1 cut(s) 828
BsiHKAI GWGCWC 2 cut(s) 557, 846
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 7 cut(s) 177, 443, 451, 466, 683, 829, 904
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 8 cut(s) 196, 342, 376, 424, 442, 465, 537, 835
BsmAI GTCTC 1 cut(s) 490
BsmFI GGGAC 1 cut(s) 770
BsnI GGCC 3 cut(s) 115, 180, 242
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 473, 557, 846
Bsp13I TCCGGA 2 cut(s) 442, 450
Bsp143I GATC 2 cut(s) 345, 926
Bsp1720I GCTNAGC 1 cut(s) 644
Bsp19I CCATGG 1 cut(s) 315
BspANI GGCC 3 cut(s) 115, 180, 242
BspCNI CTCAG 3 cut(s) 60, 123, 636
BspEI TCCGGA 2 cut(s) 442, 450
BspFNI CGCG 2 cut(s) 192, 932
BspLI GGNNCC 6 cut(s) 347, 381, 470, 479, 827, 928
BspPI GGATC 4 cut(s) 340, 353, 921, 934
BspT107I GGYRCC 2 cut(s) 468, 825
BsrBI CCGCTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 828
BssAI RCCGGY 1 cut(s) 828
BssMI GATC 2 cut(s) 345, 926
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 376, 577
Bst6I CTCTTC 3 cut(s) 191, 746, 767
BstAPI GCANNNNNTGC 1 cut(s) 832
BstBAI YACGTR 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 4 cut(s) 47, 110, 208, 644
BstDSI CCRYGG 3 cut(s) 315, 375, 930
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 308
BstFNI CGCG 2 cut(s) 192, 932
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 2 cut(s) 348, 929
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 2 cut(s) 345, 926
BstMWI GCNNNNNNNGC 5 cut(s) 327, 832, 841, 862, 871
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 4 cut(s) 175, 336, 682, 902
BstSLI GKGCMC 1 cut(s) 473
BstUI CGCG 2 cut(s) 192, 932
BstV1I GCAGC 3 cut(s) 567, 843, 849
BstX2I RGATCY 2 cut(s) 345, 926
BstYI RGATCY 2 cut(s) 345, 926
Bsu36I CCTNAGG 1 cut(s) 110
BsuRI GGCC 3 cut(s) 115, 180, 242
BtgI CCRYGG 3 cut(s) 315, 375, 930
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 387, 582
Cac8I GCNNGC 1 cut(s) 596
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 828
Cfr13I GGNCC 4 cut(s) 199, 241, 379, 427
Cfr42I CCGCGG 1 cut(s) 933
Csp6I GTAC 2 cut(s) 358, 787
CspAI ACCGGT 1 cut(s) 828
CviAII CATG 4 cut(s) 70, 316, 355, 667
CviQI GTAC 2 cut(s) 358, 787
DdeI CTNAG 4 cut(s) 47, 110, 208, 644
DpnI GATC 2 cut(s) 347, 928
DpnII GATC 2 cut(s) 345, 926
Eam1104I CTCTTC 3 cut(s) 191, 746, 767
EarI CTCTTC 3 cut(s) 191, 746, 767
EciI GGCGGA 3 cut(s) 157, 322, 565
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 557
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 3 cut(s) 199, 379, 427
Eco47III AGCGCT 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 555
Eco57I CTGAAG 2 cut(s) 791, 896
Eco72I CACGTG 1 cut(s) 564
Eco81I CCTNAGG 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 2 cut(s) 199, 241
EcoRII CCWGG 1 cut(s) 336
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 4 cut(s) 73, 319, 358, 670
FaiI YATR 5 cut(s) 71, 317, 356, 461, 668
FaqI GGGAC 1 cut(s) 770
FatI CATG 4 cut(s) 69, 315, 354, 666
FauI CCCGC 3 cut(s) 390, 520, 858
Fnu4HI GCNGC 5 cut(s) 581, 857, 860, 863, 940
FokI GGATG 1 cut(s) 315
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 5 cut(s) 581, 857, 860, 863, 940
FspBI CTAG 1 cut(s) 482
GlaI GCGC 1 cut(s) 329
GluI GCNGC 5 cut(s) 581, 857, 860, 863, 940
GsaI CCCAGC 1 cut(s) 946
GsuI CTGGAG 1 cut(s) 761
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 3 cut(s) 115, 180, 242
HapII CCGG 7 cut(s) 177, 443, 451, 466, 683, 829, 904
HhaI GCGC 1 cut(s) 330
Hin1II CATG 4 cut(s) 73, 319, 358, 670
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 2 cut(s) 693, 730
HindII GTYRAC 2 cut(s) 693, 730
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 4 cut(s) 4, 118, 230, 432
HpaII CCGG 7 cut(s) 177, 443, 451, 466, 683, 829, 904
HphI GGTGA 4 cut(s) 364, 412, 673, 682
Hpy166II GTNNAC 4 cut(s) 379, 664, 693, 730
Hpy188I TCNGA 2 cut(s) 345, 431
Hpy188III TCNNGA 4 cut(s) 443, 451, 526, 740
Hpy8I GTNNAC 4 cut(s) 379, 664, 693, 730
Hpy99I CGWCG 2 cut(s) 230, 890
HpyAV CCTTC 4 cut(s) 37, 41, 800, 871
HpyCH4III ACNGT 2 cut(s) 376, 577
HpyCH4IV ACGT 3 cut(s) 225, 563, 759
HpyCH4V TGCA 2 cut(s) 598, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 327, 832, 841, 862, 871
HpyF3I CTNAG 4 cut(s) 47, 110, 208, 644
HpySE526I ACGT 3 cut(s) 225, 563, 759
Hsp92II CATG 4 cut(s) 73, 319, 358, 670
HspAI GCGC 1 cut(s) 328
Kpn2I TCCGGA 2 cut(s) 442, 450
KspI CCGCGG 1 cut(s) 933
Kzo9I GATC 2 cut(s) 345, 926
LmnI GCTCC 7 cut(s) 272, 335, 372, 483, 552, 560, 841
Lsp1109I GCAGC 3 cut(s) 567, 843, 849
LweI GCATC 4 cut(s) 293, 330, 861, 906
MaeI CTAG 1 cut(s) 482
MaeII ACGT 3 cut(s) 225, 563, 759
MalI GATC 2 cut(s) 347, 928
MbiI CCGCTC 1 cut(s) 267
MboI GATC 2 cut(s) 345, 926
MboII GAAGA 5 cut(s) 178, 397, 763, 784, 823
MfeI CAATTG 1 cut(s) 503
MflI RGATCY 2 cut(s) 345, 926
MhlI GDGCHC 3 cut(s) 473, 557, 846
MluCI AATT 6 cut(s) 124, 133, 503, 533, 599, 712
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 4 cut(s) 40, 77, 126, 323
MroI TCCGGA 2 cut(s) 442, 450
MseI TTAA 3 cut(s) 705, 816, 897
MspA1I CMGCKG 3 cut(s) 862, 932, 942
MspI CCGG 7 cut(s) 177, 443, 451, 466, 683, 829, 904
MspR9I CCNGG 4 cut(s) 177, 338, 684, 904
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 2 cut(s) 192, 932
MwoI GCNNNNNNNGC 5 cut(s) 327, 832, 841, 862, 871
NciI CCSGG 3 cut(s) 177, 684, 904
NcoI CCATGG 1 cut(s) 315
NdeII GATC 2 cut(s) 345, 926
NlaIII CATG 4 cut(s) 73, 319, 358, 670
NlaIV GGNNCC 6 cut(s) 347, 381, 470, 479, 827, 928
NmeAIII GCCGAG 1 cut(s) 846
NspI RCATGY 1 cut(s) 358
PasI CCCWGGG 1 cut(s) 337
PciI ACATGT 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 569
PfeI GAWTC 3 cut(s) 4, 230, 432
PinAI ACCGGT 1 cut(s) 828
PkrI GCNGC 5 cut(s) 582, 858, 861, 864, 941
PleI GAGTC 1 cut(s) 112
PmaCI CACGTG 1 cut(s) 564
PmlI CACGTG 1 cut(s) 564
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 564
PpuMI RGGWCCY 1 cut(s) 199
PscI ACATGT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 557
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 336
PspCI CACGTG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 942
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 6 cut(s) 347, 381, 470, 479, 827, 928
PspPI GGNCC 4 cut(s) 199, 241, 379, 427
PspPPI RGGWCCY 1 cut(s) 199
PsuI RGATCY 2 cut(s) 345, 926
PvuII CAGCTG 1 cut(s) 942
RsaI GTAC 2 cut(s) 359, 788
RsaNI GTAC 2 cut(s) 358, 787
SacI GAGCTC 1 cut(s) 557
SacII CCGCGG 1 cut(s) 933
SaqAI TTAA 3 cut(s) 705, 816, 897
SatI GCNGC 5 cut(s) 581, 857, 860, 863, 940
Sau3AI GATC 2 cut(s) 345, 926
Sau96I GGNCC 4 cut(s) 199, 241, 379, 427
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 4 cut(s) 177, 338, 684, 904
SduI GDGCHC 3 cut(s) 473, 557, 846
SfaNI GCATC 4 cut(s) 293, 330, 861, 906
Sfr303I CCGCGG 1 cut(s) 933
SgrBI CCGCGG 1 cut(s) 933
SinI GGWCC 3 cut(s) 199, 379, 427
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 6 cut(s) 124, 133, 503, 533, 599, 712
SspMI CTAG 1 cut(s) 482
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 175, 336, 682, 902
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 376, 577
TaiI ACGT 3 cut(s) 228, 566, 762
TaqI TCGA 5 cut(s) 228, 324, 351, 408, 590
TaqII GACCGA 1 cut(s) 545
TasI AATT 6 cut(s) 124, 133, 503, 533, 599, 712
TatI WGTACW 1 cut(s) 786
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 3 cut(s) 4, 230, 432
Tru1I TTAA 3 cut(s) 705, 816, 897
Tru9I TTAA 3 cut(s) 705, 816, 897
TscAI CASTG 2 cut(s) 394, 582
TseI GCWGC 4 cut(s) 580, 856, 862, 939
TspDTI ATGAA 2 cut(s) 86, 764
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 394, 582
VpaK11BI GGWCC 3 cut(s) 199, 379, 427
XagI CCTNNNNNAGG 1 cut(s) 422
XceI RCATGY 1 cut(s) 358
XspI CTAG 1 cut(s) 482
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.