Rh4AG370800
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
67841222 .. 67850920
9699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG370800.1

Sequence Viewer

Length: 993 bp
ATGACACTCCGACCTCACACTCTCTTCCTCCCTCAAGCCTCCTTAACCCCCCCATCTCCTAAACCCTCCAAAAACCCTTCCAACTCCTTCACCCCAACTCTCAATTCCCCAATCTACCCCTCCCTCTCCCTCCACCACCACCACCCAACCACCCCCACCGACTCCGGCATCCTCTTCCGCGAAAAGCTCATCTACCTCGAAAGCCACCTCAACGTCAATCCCCAAAAAGCCCTCCATCTAAACCCCGACTTCCGCTCCTGCCCCCTCTCCTCCGTCAAGTCCGTCGAGCACTGCCTCTCCTCCATGGGCATCGAGCTCTCCGCCATGGGCCGCATCCTCGACATGCACCCCCAGCTCCTCACCGTGGACCCCCACTCCCACCTCTACCCCGTCTTCGACTTCCTCCTCCACGACGCCCATATCCCCTTCCACGATATCCGCAAGTCCATCGTCCGCTGCCCCAGGCTCCTCGTCTGTGACGTCAGCAACCAACTCCGACCCGCCTTGGAGTTCCTGACCCAACTAGGTTTTAAGGGCGTGACGTGCCAGACCACGGTCCTATTGGTCTCGAGCGTCAGAGGTACCCTTTTGCCCAAGATTGAGTATTTGCAGAGTCTGGGCCTGAGTCACGCGGAGGTGGCCAACATGGTGATAAGGTCGCCGGCGCTGTTGACTCTCAGCATACACAACAATTTCATGCCGAAAGTCGAGTATTTAGTGCAAGAGATGAAGAAAGATGTGAAGGAGCTCAAGAGGTTTCCGCAGTACTTTTCGTTTAGTTTGGAGGGGAGGATTAAGCCTAGGCACAGATTGTTGGCTGAGCACGGCTTTTCGCTTCCGTTGAGGGACATGTTGAGGATATTGATCATTGATGGAGGTGGAGCTAGGGAGCTTTACGGTGGTTGTAGTAGTGACGTAGCCACAGGAACCAAGTTCAATCCTGAACTAACTGGCCAGCGAGGTTTCAGCTACACTTCGATCATTCATTCTTAG

Protein Analysis

330

Amino Acids

37.02

Weight (kDa)

9.11

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 97 - 177 9.8e-06 mTERF
mTERF PF02536 145 - 286 9.1e-30 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011186)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
Acc65I GGTACC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 581
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 2 cut(s) 180, 632
AciI CCGC 9 cut(s) 178, 253, 321, 331, 439, 454, 501, 632, 761
AcoI YGGCCR 2 cut(s) 639, 952
AcyI GRCGYC 2 cut(s) 414, 480
AfaI GTAC 2 cut(s) 583, 767
AfiI CCNNNNNNNGG 2 cut(s) 364, 553
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 1 cut(s) 937
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 1 cut(s) 461
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 7 cut(s) 187, 316, 355, 748, 884, 892, 969
AluI AGCT 7 cut(s) 187, 316, 355, 748, 884, 892, 969
Alw21I GWGCWC 4 cut(s) 291, 318, 750, 825
Alw26I GTCTC 1 cut(s) 571
AlwNI CAGNNNCTG 1 cut(s) 616
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 4 cut(s) 328, 619, 639, 952
ApeKI GCWGC 1 cut(s) 456
Asp718I GGTACC 1 cut(s) 581
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 4 cut(s) 328, 367, 556, 619
AsuHPI GGTGA 3 cut(s) 82, 352, 661
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 2 cut(s) 367, 556
AvrII CCTAGG 1 cut(s) 800
BalI TGGCCA 2 cut(s) 641, 954
BanI GGYRCC 1 cut(s) 581
BanII GRGCYC 2 cut(s) 318, 750
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 4 cut(s) 291, 318, 750, 825
BbvI GCAGC 1 cut(s) 443
BccI CCATC 4 cut(s) 61, 243, 455, 866
BceAI ACGGC 1 cut(s) 841
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 1 cut(s) 463
BclI TGATCA 1 cut(s) 864
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 3 cut(s) 524, 801, 885
BfoI RGCGCY 1 cut(s) 668
BisI GCNGC 2 cut(s) 331, 457
BlnI CCTAGG 1 cut(s) 800
BlpI GCTNAGC 1 cut(s) 819
BlsI GCNGC 2 cut(s) 332, 458
BmcAI AGTACT 1 cut(s) 767
Bme1390I CCNGG 1 cut(s) 463
Bme18I GGWCC 2 cut(s) 367, 556
BmeT110I CYCGRG 1 cut(s) 568
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 4 cut(s) 328, 367, 556, 619
BmiI GGNNCC 4 cut(s) 369, 467, 583, 928
BmrFI CCNGG 1 cut(s) 463
BmsI GCATC 3 cut(s) 177, 318, 342
BoxI GACNNNNGTC 1 cut(s) 554
BpiI GAAGAC 1 cut(s) 385
Bpu1102I GCTNAGC 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 18, 734
BsaBI GATNNNNATC 1 cut(s) 863
BsaHI GRCGYC 2 cut(s) 414, 480
BsaI GGTCTC 1 cut(s) 571
BsaJI CCNNGG 7 cut(s) 303, 324, 363, 461, 504, 552, 800
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 281, 311, 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 553
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 1 cut(s) 955
Bse8I GATNNNNATC 1 cut(s) 863
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 7 cut(s) 303, 324, 363, 461, 504, 552, 800
BseGI GGATG 2 cut(s) 168, 333
BseJI GATNNNNATC 1 cut(s) 863
BseLI CCNNNNNNNGG 2 cut(s) 364, 553
BseMII CTCAG 3 cut(s) 614, 691, 810
BseNI ACTGG 1 cut(s) 955
BseRI GAGGAG 5 cut(s) 259, 289, 347, 395, 458
BseXI GCAGC 1 cut(s) 443
BseYI CCCAGC 1 cut(s) 351
Bsh1236I CGCG 2 cut(s) 180, 632
BshFI GGCC 4 cut(s) 330, 621, 641, 954
BshNI GGYRCC 1 cut(s) 581
BsiHKAI GWGCWC 4 cut(s) 291, 318, 750, 825
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 2 cut(s) 165, 662
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 2 cut(s) 364, 553
BsmAI GTCTC 1 cut(s) 571
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 4 cut(s) 330, 621, 641, 954
Bso31I GGTCTC 1 cut(s) 571
BsoBI CYCGRG 1 cut(s) 568
Bsp1286I GDGCHC 4 cut(s) 291, 318, 750, 825
Bsp143I GATC 2 cut(s) 864, 978
Bsp1720I GCTNAGC 1 cut(s) 819
Bsp19I CCATGG 2 cut(s) 303, 324
BspACI CCGC 9 cut(s) 178, 253, 321, 331, 439, 454, 501, 632, 761
BspANI GGCC 4 cut(s) 330, 621, 641, 954
BspCNI CTCAG 3 cut(s) 615, 690, 811
BspFNI CGCG 2 cut(s) 180, 632
BspLI GGNNCC 4 cut(s) 369, 467, 583, 928
BspT107I GGYRCC 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 571
BsrBI CCGCTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 1 cut(s) 955
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 7 cut(s) 303, 324, 363, 461, 504, 552, 800
BssMI GATC 2 cut(s) 864, 978
BssNI GRCGYC 2 cut(s) 414, 480
BssT1I CCWWGG 4 cut(s) 303, 324, 504, 800
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 3 cut(s) 364, 556, 899
Bst6I CTCTTC 2 cut(s) 29, 179
BstACI GRCGYC 2 cut(s) 414, 480
BstC8I GCNNGC 2 cut(s) 663, 956
BstDEI CTNAG 4 cut(s) 623, 677, 819, 990
BstDSI CCRYGG 4 cut(s) 303, 324, 363, 552
BstF5I GGATG 2 cut(s) 168, 333
BstFNI CGCG 2 cut(s) 180, 632
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 2 cut(s) 867, 981
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 2 cut(s) 864, 978
BstMWI GCNNNNNNNGC 3 cut(s) 352, 543, 638
BstNI CCWGG 1 cut(s) 463
BstNSI RCATGY 2 cut(s) 346, 853
BstPAI GACNNNNGTC 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 461
BstUI CGCG 2 cut(s) 180, 632
BstV1I GCAGC 1 cut(s) 443
BstV2I GAAGAC 1 cut(s) 385
BsuRI GGCC 4 cut(s) 330, 621, 641, 954
BtgI CCRYGG 4 cut(s) 303, 324, 363, 552
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 2 cut(s) 168, 333
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 663, 956
CaiI CAGNNNCTG 1 cut(s) 616
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 4 cut(s) 328, 367, 556, 619
CseI GACGC 2 cut(s) 422, 562
Csp6I GTAC 2 cut(s) 582, 766
CviAII CATG 6 cut(s) 304, 325, 343, 646, 697, 850
CviQI GTAC 2 cut(s) 582, 766
DdeI CTNAG 4 cut(s) 623, 677, 819, 990
DpnI GATC 2 cut(s) 866, 980
DpnII GATC 2 cut(s) 864, 978
EaeI YGGCCR 2 cut(s) 639, 952
Eam1104I CTCTTC 2 cut(s) 29, 179
EarI CTCTTC 2 cut(s) 29, 179
EciI GGCGGA 1 cut(s) 310
Ecl136II GAGCTC 2 cut(s) 316, 748
Eco130I CCWWGG 4 cut(s) 303, 324, 504, 800
Eco24I GRGCYC 2 cut(s) 318, 750
Eco31I GGTCTC 1 cut(s) 571
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 367, 556
Eco53kI GAGCTC 2 cut(s) 316, 748
Eco88I CYCGRG 1 cut(s) 568
EcoICRI GAGCTC 2 cut(s) 316, 748
EcoRII CCWGG 1 cut(s) 461
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 4 cut(s) 303, 324, 504, 800
EcoT38I GRGCYC 2 cut(s) 318, 750
ErhI CCWWGG 4 cut(s) 303, 324, 504, 800
FaeI CATG 6 cut(s) 307, 328, 346, 649, 700, 853
FaiI YATR 8 cut(s) 305, 326, 344, 420, 647, 683, 698, 851
FaqI GGGAC 1 cut(s) 860
FatI CATG 6 cut(s) 303, 324, 342, 645, 696, 849
FauI CCCGC 1 cut(s) 508
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 2 cut(s) 331, 457
FokI GGATG 2 cut(s) 155, 320
FriOI GRGCYC 2 cut(s) 318, 750
Fsp4HI GCNGC 2 cut(s) 331, 457
FspBI CTAG 3 cut(s) 524, 801, 885
GlaI GCGC 1 cut(s) 666
GluI GCNGC 2 cut(s) 331, 457
GsaI CCCAGC 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 4 cut(s) 330, 621, 641, 954
HapII CCGG 2 cut(s) 165, 662
HgaI GACGC 2 cut(s) 422, 562
HhaI GCGC 1 cut(s) 667
Hin1I GRCGYC 2 cut(s) 414, 480
Hin1II CATG 6 cut(s) 307, 328, 346, 649, 700, 853
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HinfI GANTC 4 cut(s) 161, 613, 625, 673
HpaII CCGG 2 cut(s) 165, 662
HphI GGTGA 3 cut(s) 82, 352, 661
Hpy166II GTNNAC 2 cut(s) 367, 672
Hpy188I TCNGA 3 cut(s) 11, 497, 578
Hpy188III TCNNGA 4 cut(s) 514, 568, 751, 941
Hpy8I GTNNAC 2 cut(s) 367, 672
Hpy99I CGWCG 2 cut(s) 287, 416
HpyAV CCTTC 4 cut(s) 87, 97, 436, 736
HpyCH4III ACNGT 3 cut(s) 364, 556, 899
HpyCH4IV ACGT 4 cut(s) 213, 480, 542, 915
HpyCH4V TGCA 3 cut(s) 346, 610, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 543, 638
HpyF3I CTNAG 4 cut(s) 623, 677, 819, 990
HpySE526I ACGT 4 cut(s) 213, 480, 542, 915
Hsp92I GRCGYC 2 cut(s) 414, 480
Hsp92II CATG 6 cut(s) 307, 328, 346, 649, 700, 853
HspAI GCGC 1 cut(s) 665
KpnI GGTACC 1 cut(s) 585
KroI GCCGGC 1 cut(s) 661
KroNI GCCGGC 1 cut(s) 663
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 2 cut(s) 864, 978
LmnI GCTCC 6 cut(s) 260, 360, 471, 745, 881, 889
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 3 cut(s) 177, 318, 342
MaeI CTAG 3 cut(s) 524, 801, 885
MaeII ACGT 4 cut(s) 213, 480, 542, 915
MaeIII GTNAC 4 cut(s) 476, 538, 626, 911
MalI GATC 2 cut(s) 866, 980
MbiI CCGCTC 1 cut(s) 255
MboI GATC 2 cut(s) 864, 978
MboII GAAGA 4 cut(s) 16, 166, 385, 742
MhlI GDGCHC 4 cut(s) 291, 318, 750, 825
MlsI TGGCCA 2 cut(s) 641, 954
MluCI AATT 2 cut(s) 103, 691
MluNI TGGCCA 2 cut(s) 641, 954
MlyI GAGTC 4 cut(s) 155, 622, 634, 667
MmeI TCCRAC 3 cut(s) 34, 105, 520
Mox20I TGGCCA 2 cut(s) 641, 954
MreI CGCCGGCG 1 cut(s) 661
MroNI GCCGGC 1 cut(s) 661
MscI TGGCCA 2 cut(s) 641, 954
MseI TTAA 3 cut(s) 44, 531, 795
Msp20I TGGCCA 2 cut(s) 641, 954
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 2 cut(s) 165, 662
MspR9I CCNGG 1 cut(s) 463
MvaI CCWGG 1 cut(s) 463
MvnI CGCG 2 cut(s) 180, 632
MwoI GCNNNNNNNGC 3 cut(s) 352, 543, 638
NaeI GCCGGC 1 cut(s) 663
NcoI CCATGG 2 cut(s) 303, 324
NdeII GATC 2 cut(s) 864, 978
NgoMIV GCCGGC 1 cut(s) 661
NlaIII CATG 6 cut(s) 307, 328, 346, 649, 700, 853
NlaIV GGNNCC 4 cut(s) 369, 467, 583, 928
NmuCI GTSAC 4 cut(s) 476, 538, 626, 911
NspI RCATGY 2 cut(s) 346, 853
PaeR7I CTCGAG 1 cut(s) 568
PciI ACATGT 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 663
PkrI GCNGC 2 cut(s) 332, 458
PleI GAGTC 4 cut(s) 155, 621, 633, 667
PpsI GAGTC 4 cut(s) 155, 621, 633, 667
PscI ACATGT 1 cut(s) 849
PshAI GACNNNNGTC 1 cut(s) 554
Psp124BI GAGCTC 2 cut(s) 318, 750
Psp6I CCWGG 1 cut(s) 461
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 4 cut(s) 369, 467, 583, 928
PspPI GGNCC 4 cut(s) 328, 367, 556, 619
PstNI CAGNNNCTG 1 cut(s) 616
RsaI GTAC 2 cut(s) 583, 767
RsaNI GTAC 2 cut(s) 582, 766
SacI GAGCTC 2 cut(s) 318, 750
SaqAI TTAA 3 cut(s) 44, 531, 795
SatI GCNGC 2 cut(s) 331, 457
Sau3AI GATC 2 cut(s) 864, 978
Sau96I GGNCC 4 cut(s) 328, 367, 556, 619
ScaI AGTACT 1 cut(s) 767
SchI GAGTC 4 cut(s) 155, 622, 634, 667
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 4 cut(s) 291, 318, 750, 825
SfaNI GCATC 3 cut(s) 177, 318, 342
Sfr274I CTCGAG 1 cut(s) 568
SgrAI CRCCGGYG 1 cut(s) 661
SinI GGWCC 2 cut(s) 367, 556
SlaI CTCGAG 1 cut(s) 568
SmlI CTYRAG 3 cut(s) 33, 568, 749
SmoI CTYRAG 3 cut(s) 33, 568, 749
Sse9I AATT 2 cut(s) 103, 691
SsiI CCGC 9 cut(s) 178, 253, 321, 331, 439, 454, 501, 632, 761
SspMI CTAG 3 cut(s) 524, 801, 885
SstI GAGCTC 2 cut(s) 318, 750
StyD4I CCNGG 1 cut(s) 461
StyI CCWWGG 4 cut(s) 303, 324, 504, 800
TaaI ACNGT 3 cut(s) 364, 556, 899
TaiI ACGT 4 cut(s) 216, 483, 545, 918
TaqI TCGA 8 cut(s) 198, 285, 312, 339, 396, 569, 708, 977
TasI AATT 2 cut(s) 103, 691
TatI WGTACW 1 cut(s) 765
TauI GCSGC 1 cut(s) 333
Tru1I TTAA 3 cut(s) 44, 531, 795
Tru9I TTAA 3 cut(s) 44, 531, 795
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 4 cut(s) 476, 538, 626, 911
TseI GCWGC 1 cut(s) 456
Tsp45I GTSAC 4 cut(s) 476, 538, 626, 911
TspDTI ATGAA 3 cut(s) 685, 743, 974
TspGWI ACGGA 3 cut(s) 262, 271, 828
TspRI CASTG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 367, 556
XceI RCATGY 2 cut(s) 346, 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 568
XmaJI CCTAGG 1 cut(s) 800
XspI CTAG 3 cut(s) 524, 801, 885
ZraI GACGTC 1 cut(s) 481
ZrmI AGTACT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.