Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Forward (+)

60627868 .. 60628794

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACACTCCGACCTCACACTCTCTTCCTCCCTCAAGCCTCCTTAACCCCCCCATCTCCTAAACCCTCCAAAAACCCCAAAACCCCTCCCAACTCCTTCACCCCAACTCTCAATTCCCCAATCTACCCCTCCCTCTCCCTCCACCACCACCCAACCACCCCCACCGACTCCGGCATCCTGTTCCGCGAAAAGCTCATCTACCTGGAAACCCACCTCAACGTCAATCCCCAAAAAGCCCTCCATCTAAACCCCGACTTCCGCTGCTGCCCCCTCTCCTCCGTCAAGTCCGTCGAGCACTGCCTCTCCTCCATGGGCATCGAGCTCTCCGCCATGGGCCGCATCCTCGACATGCACCCCCAGCTCCTCACGGTGGACCCCCACTCCCACCTCTACCCCGTCTTCGACTTCCTCCTCCACGACGCCCATATCCCCTTCCACGATATCCGCAAGTCCATCATCCGCTGCCCCAGGCTCCTCGTCTGTGACGTCAGCAACCAACTCCGACCCGCCTTGGAGTTCCTGACCCAACTAGGTTTTAAGGGCGTGACGTGCCAGACCACGGTCCTATTGGTCTCGAGCGTTAGAGGTACCCTTTTGCCCAAGATTGAGTATTTGCAGAGTCTGGGGCTGAGTCACGCGGAGGTGGCCAACATGGTGATAAGGTCGCCGGCGCTGTTGACTTTAAGCATACCCAACAATTTCATGCCGAAAGTCGAGTATTTAGTGCAAGAGATGAAGAAAGATGTGAAGGAGCTCAAGAGGTTTCCGCAGTACTTTTCGTTTAGTTTGGAGGGGAGGATTAAGCCGAGGCACAGATTGTTGGCTGAGCACGGCTTTTCGCTTCCGTTGAGGGAGATGTTGAGGGTTAGTGATGGCGAGTTTAATGCTATGTTGATTGAGATGCGATTGGATTGCAGAGGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

308

Amino Acids

34.91

Weight (kDa)

9.07

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	99 - 180	9.9e-06	mTERF
mTERF	PF02536	149 - 294	1.7e-31	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	489
Acc65I	GGTACC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	587
AccII	CGCG	2 cut(s)	186, 638
AciI	CCGC	9 cut(s)	184, 259, 327, 337, 445, 460, 507, 638, 767
AcoI	YGGCCR	1 cut(s)	645
AcyI	GRCGYC	2 cut(s)	420, 486
AfaI	GTAC	2 cut(s)	589, 773
AfiI	CCNNNNNNNGG	2 cut(s)	370, 559
AjiI	CACGTC	1 cut(s)	549
AjnI	CCWGG	2 cut(s)	201, 467
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	4 cut(s)	193, 322, 361, 754
AluI	AGCT	4 cut(s)	193, 322, 361, 754
Alw21I	GWGCWC	4 cut(s)	297, 324, 756, 831
Alw26I	GTCTC	1 cut(s)	577
AlwNI	CAGNNNCTG	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	574
AoxI	GGCC	2 cut(s)	334, 645
ApeKI	GCWGC	3 cut(s)	261, 264, 462
Asp718I	GGTACC	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	3 cut(s)	334, 373, 562
AsuHPI	GGTGA	2 cut(s)	91, 667
AvaI	CYCGRG	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	373, 562
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	324, 756
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	4 cut(s)	297, 324, 756, 831
BbvI	GCAGC	3 cut(s)	248, 251, 449
BccI	CCATC	4 cut(s)	61, 249, 461, 866
BceAI	ACGGC	1 cut(s)	847
BcgI	CGANNNNNNTGC	3 cut(s)	866, 894, 900
BciT130I	CCWGG	2 cut(s)	203, 469
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	1 cut(s)	530
BfoI	RGCGCY	1 cut(s)	674
BisI	GCNGC	4 cut(s)	262, 265, 337, 463
BlpI	GCTNAGC	1 cut(s)	825
BlsI	GCNGC	4 cut(s)	263, 266, 338, 464
BmcAI	AGTACT	1 cut(s)	773
Bme1390I	CCNGG	2 cut(s)	203, 469
Bme18I	GGWCC	2 cut(s)	373, 562
BmeT110I	CYCGRG	1 cut(s)	574
BmgBI	CACGTC	1 cut(s)	549
BmgT120I	GGNCC	3 cut(s)	334, 373, 562
BmiI	GGNNCC	3 cut(s)	375, 473, 589
BmrFI	CCNGG	2 cut(s)	203, 469
BmsI	GCATC	4 cut(s)	183, 324, 348, 891
BoxI	GACNNNNGTC	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	391
Bpu1102I	GCTNAGC	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	18, 740
BsaHI	GRCGYC	2 cut(s)	420, 486
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	6 cut(s)	309, 330, 467, 510, 558, 806
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 559
Bse118I	RCCGGY	1 cut(s)	667
BseBI	CCWGG	2 cut(s)	203, 469
BseDI	CCNNGG	6 cut(s)	309, 330, 467, 510, 558, 806
BseGI	GGATG	3 cut(s)	174, 339, 456
BseLI	CCNNNNNNNGG	2 cut(s)	370, 559
BseMII	CTCAG	2 cut(s)	620, 816
BseRI	GAGGAG	5 cut(s)	265, 295, 353, 401, 464
BseXI	GCAGC	3 cut(s)	248, 251, 449
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	2 cut(s)	186, 638
BshFI	GGCC	2 cut(s)	336, 647
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	4 cut(s)	297, 324, 756, 831
BsiHKCI	CYCGRG	1 cut(s)	574
BsiSI	CCGG	2 cut(s)	171, 668
BslI	CCNNNNNNNGG	2 cut(s)	370, 559
BsmAI	GTCTC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	336, 647
Bso31I	GGTCTC	1 cut(s)	577
BsoBI	CYCGRG	1 cut(s)	574
Bsp1286I	GDGCHC	4 cut(s)	297, 324, 756, 831
Bsp1720I	GCTNAGC	1 cut(s)	825
Bsp19I	CCATGG	2 cut(s)	309, 330
BspACI	CCGC	9 cut(s)	184, 259, 327, 337, 445, 460, 507, 638, 767
BspANI	GGCC	2 cut(s)	336, 647
BspCNI	CTCAG	2 cut(s)	621, 817
BspFNI	CGCG	2 cut(s)	186, 638
BspLI	GGNNCC	3 cut(s)	375, 473, 589
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	577
BsrFI	RCCGGY	1 cut(s)	667
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	6 cut(s)	309, 330, 467, 510, 558, 806
BssNI	GRCGYC	2 cut(s)	420, 486
BssT1I	CCWWGG	3 cut(s)	309, 330, 510
Bst2UI	CCWGG	2 cut(s)	203, 469
Bst4CI	ACNGT	2 cut(s)	370, 562
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	2 cut(s)	420, 486
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	2 cut(s)	629, 825
BstDSI	CCRYGG	3 cut(s)	309, 330, 558
BstF5I	GGATG	3 cut(s)	174, 339, 456
BstFNI	CGCG	2 cut(s)	186, 638
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	577
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 549, 644
BstNI	CCWGG	2 cut(s)	203, 469
BstNSI	RCATGY	1 cut(s)	352
BstPAI	GACNNNNGTC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	201, 467
BstUI	CGCG	2 cut(s)	186, 638
BstV1I	GCAGC	3 cut(s)	248, 251, 449
BstV2I	GAAGAC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	336, 647
BtgI	CCRYGG	3 cut(s)	309, 330, 558
BtrI	CACGTC	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	174, 339, 456
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	669
CaiI	CAGNNNCTG	1 cut(s)	622
CfoI	GCGC	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	3 cut(s)	334, 373, 562
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	588, 772
CviAII	CATG	5 cut(s)	310, 331, 349, 652, 703
CviQI	GTAC	2 cut(s)	588, 772
DdeI	CTNAG	2 cut(s)	629, 825
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	316
Ecl136II	GAGCTC	2 cut(s)	322, 754
Eco130I	CCWWGG	3 cut(s)	309, 330, 510
Eco24I	GRGCYC	2 cut(s)	324, 756
Eco31I	GGTCTC	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	373, 562
Eco53kI	GAGCTC	2 cut(s)	322, 754
Eco88I	CYCGRG	1 cut(s)	574
EcoICRI	GAGCTC	2 cut(s)	322, 754
EcoRII	CCWGG	2 cut(s)	201, 467
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	3 cut(s)	309, 330, 510
EcoT38I	GRGCYC	2 cut(s)	324, 756
ErhI	CCWWGG	3 cut(s)	309, 330, 510
FaeI	CATG	5 cut(s)	313, 334, 352, 655, 706
FaiI	YATR	8 cut(s)	311, 332, 350, 426, 653, 689, 704, 890
FatI	CATG	5 cut(s)	309, 330, 348, 651, 702
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	262, 265, 337, 463
FokI	GGATG	3 cut(s)	161, 326, 443
FriOI	GRGCYC	2 cut(s)	324, 756
Fsp4HI	GCNGC	4 cut(s)	262, 265, 337, 463
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	4 cut(s)	262, 265, 337, 463
GsaI	CCCAGC	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	2 cut(s)	336, 647
HapII	CCGG	2 cut(s)	171, 668
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	1 cut(s)	673
Hin1I	GRCGYC	2 cut(s)	420, 486
Hin1II	CATG	5 cut(s)	313, 334, 352, 655, 706
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HinfI	GANTC	3 cut(s)	167, 619, 631
HpaII	CCGG	2 cut(s)	171, 668
HphI	GGTGA	2 cut(s)	91, 667
Hpy166II	GTNNAC	2 cut(s)	373, 678
Hpy188I	TCNGA	2 cut(s)	11, 503
Hpy188III	TCNNGA	3 cut(s)	520, 574, 757
Hpy8I	GTNNAC	2 cut(s)	373, 678
Hpy99I	CGWCG	2 cut(s)	293, 422
HpyAV	CCTTC	3 cut(s)	106, 442, 742
HpyCH4III	ACNGT	2 cut(s)	370, 562
HpyCH4IV	ACGT	3 cut(s)	219, 486, 548
HpyCH4V	TGCA	4 cut(s)	352, 616, 727, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 549, 644
HpyF3I	CTNAG	2 cut(s)	629, 825
HpySE526I	ACGT	3 cut(s)	219, 486, 548
Hsp92I	GRCGYC	2 cut(s)	420, 486
Hsp92II	CATG	5 cut(s)	313, 334, 352, 655, 706
HspAI	GCGC	1 cut(s)	671
KpnI	GGTACC	1 cut(s)	591
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
LmnI	GCTCC	3 cut(s)	366, 477, 751
Lsp1109I	GCAGC	3 cut(s)	248, 251, 449
LweI	GCATC	4 cut(s)	183, 324, 348, 891
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	3 cut(s)	219, 486, 548
MaeIII	GTNAC	3 cut(s)	482, 544, 632
MboII	GAAGA	3 cut(s)	16, 391, 748
MhlI	GDGCHC	4 cut(s)	297, 324, 756, 831
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	2 cut(s)	112, 697
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	3 cut(s)	161, 628, 640
MmeI	TCCRAC	2 cut(s)	34, 526
Mox20I	TGGCCA	1 cut(s)	647
MreI	CGCCGGCG	1 cut(s)	667
MroNI	GCCGGC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	5 cut(s)	44, 537, 683, 801, 882
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	2 cut(s)	261, 462
MspI	CCGG	2 cut(s)	171, 668
MspR9I	CCNGG	2 cut(s)	203, 469
MvaI	CCWGG	2 cut(s)	203, 469
MvnI	CGCG	2 cut(s)	186, 638
MwoI	GCNNNNNNNGC	3 cut(s)	358, 549, 644
NaeI	GCCGGC	1 cut(s)	669
NcoI	CCATGG	2 cut(s)	309, 330
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	5 cut(s)	313, 334, 352, 655, 706
NlaIV	GGNNCC	3 cut(s)	375, 473, 589
NmeAIII	GCCGAG	1 cut(s)	831
NmuCI	GTSAC	3 cut(s)	482, 544, 632
NspI	RCATGY	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdiI	GCCGGC	1 cut(s)	669
PkrI	GCNGC	4 cut(s)	263, 266, 338, 464
PleI	GAGTC	3 cut(s)	161, 627, 639
PpsI	GAGTC	3 cut(s)	161, 627, 639
PshAI	GACNNNNGTC	1 cut(s)	560
Psp124BI	GAGCTC	2 cut(s)	324, 756
Psp6I	CCWGG	2 cut(s)	201, 467
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	2 cut(s)	201, 467
PspN4I	GGNNCC	3 cut(s)	375, 473, 589
PspPI	GGNCC	3 cut(s)	334, 373, 562
PstNI	CAGNNNCTG	1 cut(s)	622
RsaI	GTAC	2 cut(s)	589, 773
RsaNI	GTAC	2 cut(s)	588, 772
SacI	GAGCTC	2 cut(s)	324, 756
SaqAI	TTAA	5 cut(s)	44, 537, 683, 801, 882
SatI	GCNGC	4 cut(s)	262, 265, 337, 463
Sau96I	GGNCC	3 cut(s)	334, 373, 562
ScaI	AGTACT	1 cut(s)	773
SchI	GAGTC	3 cut(s)	161, 628, 640
ScrFI	CCNGG	2 cut(s)	203, 469
SduI	GDGCHC	4 cut(s)	297, 324, 756, 831
SfaNI	GCATC	4 cut(s)	183, 324, 348, 891
Sfr274I	CTCGAG	1 cut(s)	574
SgrAI	CRCCGGYG	1 cut(s)	667
SinI	GGWCC	2 cut(s)	373, 562
SlaI	CTCGAG	1 cut(s)	574
SmlI	CTYRAG	3 cut(s)	33, 574, 755
SmoI	CTYRAG	3 cut(s)	33, 574, 755
Sse9I	AATT	2 cut(s)	112, 697
SsiI	CCGC	9 cut(s)	184, 259, 327, 337, 445, 460, 507, 638, 767
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	2 cut(s)	324, 756
StyD4I	CCNGG	2 cut(s)	201, 467
StyI	CCWWGG	3 cut(s)	309, 330, 510
TaaI	ACNGT	2 cut(s)	370, 562
TaiI	ACGT	3 cut(s)	222, 489, 551
TaqI	TCGA	6 cut(s)	291, 318, 345, 402, 575, 714
TasI	AATT	2 cut(s)	112, 697
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	1 cut(s)	339
Tru1I	TTAA	5 cut(s)	44, 537, 683, 801, 882
Tru9I	TTAA	5 cut(s)	44, 537, 683, 801, 882
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	3 cut(s)	482, 544, 632
TseI	GCWGC	3 cut(s)	261, 264, 462
Tsp45I	GTSAC	3 cut(s)	482, 544, 632
TspDTI	ATGAA	2 cut(s)	691, 749
TspGWI	ACGGA	3 cut(s)	268, 277, 834
TspRI	CASTG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	373, 562
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	574
XspI	CTAG	1 cut(s)	530
ZraI	GACGTC	1 cut(s)	487
ZrmI	AGTACT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.