Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Reverse (-)

28174606 .. 28175988

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCGTTTTGTACATCCTTGGGAGCCTGGATAAAGGCCTGTCCACCTTGCTCTTCCTGCTCACACAGTGTCCACAACACCATGATACAGCTCCAACCTCAAACGCTCTTCCTTCTTCCTCAAGGGTCTCTGATCCCATCTCCAAAACCCTCCAAAAACCCTAACCCTAAAACACCCAAATCGCTCTCCAACTCCCTCAGGCCAACCCTCAATTTCCCAAATTACCGCCCACTTTCCCACCACCCAAACACTTCCGATTCCGGCCTCCTTTTCCGCGAAAAGGTCCTCTACTTAGAAACCCACCTCAACGTCAATTCCCAAAAAGCCCTCCAACTCAACCCAGATTTCCGCTCCTGCCCTATATCCTCCCTCAAGTCCGTCGAGAACTGCCTCTCCTCCATGGGCATCGAGCGCTCGGCTTTCGGTCGGATCCTCGACATGTACCCGCAGCTCCTCACTGTGGACCCGCACACCCATCTCTATCCAATCTTCGATTTTCTACTCAACGAGGTCCTAATCCCCTTCCCCGATATACGGAAGTCCATAATTCGGTGCCCTAGACTCCTGGTCTGCGACGTAGACGACCAATTGCGGCCCGCATTGAAGTTCTTGACCGAATTGGGGTTCGTGGGTCGGAGTTCGATCACGTGCCATACGACATTGCTGTTGGTTTCGAGCGTTGAAGGTACCCTTTTGCCCAAGATTCAGTATTTGCAGAGCTTGGGGCTTAGCTATGAGGAGGTGGTCAACATGGTGATAAGGTCACCTGGATTGTTAACTTTTAGCATAAAAAACAATTACAAGCCTAAAGTTGAGTTCCTTTTGAAGGAAATGAAGAAAGATATTGCAGAGCTGAAGAGGTTTCCTCAGTACTTTTCGTTTAGCTTGGAGGGAAAGATTAAGCCCAGGCATAGATTGTTAGTTGAGCACGGCTTTTCTCTTCCGTTGCGGGAGATGCTGAAGGTCAGTGATGGGGAGTTTAATGTTCGGTTGATTGAGATGCGATTGGGGTCGGTCGAGGGAAGCTGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

345

Amino Acids

38.98

Weight (kDa)

9.16

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	686
AccB1I	GGYRCC	2 cut(s)	552, 686
AccBSI	CCGCTC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	579
AccII	CGCG	1 cut(s)	276
AciI	CCGC	8 cut(s)	226, 274, 349, 446, 467, 592, 597, 949
AclWI	GGATC	3 cut(s)	127, 424, 437
AcuI	CTGAAG	2 cut(s)	875, 980
AcvI	CACGTG	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	4 cut(s)	13, 443, 688, 872
AfeI	AGCGCT	1 cut(s)	413
AfiI	CCNNNNNNNGG	6 cut(s)	280, 460, 534, 549, 621, 826
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	604, 683, 826
AhdI	GACNNNNNGTC	1 cut(s)	566
AjnI	CCWGG	4 cut(s)	26, 564, 766, 905
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	7 cut(s)	91, 451, 720, 732, 853, 885, 1026
AluI	AGCT	7 cut(s)	91, 451, 720, 732, 853, 885, 1026
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	3 cut(s)	127, 424, 437
Aor51HI	AGCGCT	1 cut(s)	413
AoxI	GGCC	4 cut(s)	36, 200, 262, 593
ApeKI	GCWGC	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	4 cut(s)	283, 463, 511, 594
AsuHPI	GGTGA	2 cut(s)	756, 766
AvaII	GGWCC	3 cut(s)	283, 463, 511
AxyI	CCTNAGG	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	429
BanI	GGYRCC	2 cut(s)	552, 686
BbrPI	CACGTG	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	3 cut(s)	145, 483, 965
BceAI	ACGGC	1 cut(s)	946
BciT130I	CCWGG	4 cut(s)	28, 566, 768, 907
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	415
BisI	GCNGC	2 cut(s)	449, 593
BlpI	GCTNAGC	1 cut(s)	728
BlsI	GCNGC	2 cut(s)	450, 594
BmcAI	AGTACT	1 cut(s)	872
Bme1390I	CCNGG	4 cut(s)	28, 566, 768, 907
Bme18I	GGWCC	3 cut(s)	283, 463, 511
BmeRI	GACNNNNNGTC	1 cut(s)	566
BmgT120I	GGNCC	4 cut(s)	283, 463, 511, 594
BmiI	GGNNCC	5 cut(s)	25, 431, 465, 554, 688
BmrFI	CCNGG	4 cut(s)	28, 566, 768, 907
BmsI	GCATC	3 cut(s)	414, 945, 990
BplI	GAGNNNNNCTC	2 cut(s)	850, 882
Bpu1102I	GCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	2 cut(s)	105, 356
BsaAI	YACGTR	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	18, 399, 905
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	6 cut(s)	280, 460, 534, 549, 621, 826
Bse21I	CCTNAGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	659
BseBI	CCWGG	4 cut(s)	28, 566, 768, 907
BseDI	CCNNGG	3 cut(s)	18, 399, 905
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	6 cut(s)	280, 460, 534, 549, 621, 826
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	211, 881
BseRI	GAGGAG	3 cut(s)	385, 443, 752
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	2 cut(s)	427, 1017
BshFI	GGCC	4 cut(s)	38, 202, 264, 595
BshNI	GGYRCC	2 cut(s)	552, 686
BsiEI	CGRYCG	2 cut(s)	427, 1017
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	6 cut(s)	280, 460, 534, 549, 621, 826
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	4 cut(s)	38, 202, 264, 595
Bso31I	GGTCTC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	557, 930
Bsp1407I	TGTACA	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	132, 429, 642
Bsp1720I	GCTNAGC	1 cut(s)	728
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	8 cut(s)	226, 274, 349, 446, 467, 592, 597, 949
BspANI	GGCC	4 cut(s)	38, 202, 264, 595
BspCNI	CTCAG	2 cut(s)	210, 880
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	5 cut(s)	25, 431, 465, 554, 688
BspPI	GGATC	3 cut(s)	127, 424, 437
BspQI	GCTCTTC	2 cut(s)	58, 113
BspT107I	GGYRCC	2 cut(s)	552, 686
BspTNI	GGTCTC	1 cut(s)	132
BsrBI	CCGCTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	18, 399, 905
BssMI	GATC	3 cut(s)	132, 429, 642
BssT1I	CCWWGG	2 cut(s)	18, 399
Bst2UI	CCWGG	4 cut(s)	28, 566, 768, 907
Bst4CI	ACNGT	2 cut(s)	68, 460
Bst6I	CTCTTC	4 cut(s)	58, 113, 851, 945
BstAUI	TGTACA	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	4 cut(s)	197, 292, 728, 867
BstDSI	CCRYGG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	762
BstENI	CCTNNNNNAGG	1 cut(s)	824
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	135, 432, 645
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	3 cut(s)	132, 429, 642
BstMCI	CGRYCG	2 cut(s)	427, 1017
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 411, 955
BstNI	CCWGG	4 cut(s)	28, 566, 768, 907
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	762
BstSCI	CCNGG	4 cut(s)	26, 564, 766, 905
BstSLI	GKGCMC	1 cut(s)	557
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	460
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
Bsu36I	CCTNAGG	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	38, 202, 264, 595
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	3 cut(s)	73, 456, 973
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	4 cut(s)	283, 463, 511, 594
Csp6I	GTAC	4 cut(s)	12, 442, 687, 871
CviAII	CATG	4 cut(s)	82, 400, 439, 751
CviQI	GTAC	4 cut(s)	12, 442, 687, 871
DdeI	CTNAG	4 cut(s)	197, 292, 728, 867
DpnI	GATC	3 cut(s)	134, 431, 644
DpnII	GATC	3 cut(s)	132, 429, 642
DraIII	CACNNNGTG	1 cut(s)	68
DriI	GACNNNNNGTC	1 cut(s)	566
Eam1104I	CTCTTC	4 cut(s)	58, 113, 851, 945
Eam1105I	GACNNNNNGTC	1 cut(s)	566
EarI	CTCTTC	4 cut(s)	58, 113, 851, 945
Eco130I	CCWWGG	2 cut(s)	18, 399
Eco147I	AGGCCT	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	3 cut(s)	283, 463, 511
Eco47III	AGCGCT	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	875, 980
Eco72I	CACGTG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	762
EcoNI	CCTNNNNNAGG	1 cut(s)	824
EcoO109I	RGGNCCY	2 cut(s)	283, 511
EcoO65I	GGTNACC	1 cut(s)	762
EcoRII	CCWGG	4 cut(s)	26, 564, 766, 905
EcoT14I	CCWWGG	2 cut(s)	18, 399
ErhI	CCWWGG	2 cut(s)	18, 399
FaeI	CATG	4 cut(s)	85, 403, 442, 754
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FatI	CATG	4 cut(s)	81, 399, 438, 750
FauI	CCCGC	4 cut(s)	453, 474, 604, 942
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	449, 593
Fsp4HI	GCNGC	2 cut(s)	449, 593
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	2 cut(s)	449, 593
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	4 cut(s)	38, 202, 264, 595
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	4 cut(s)	85, 403, 442, 754
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	2 cut(s)	748, 777
HindII	GTYRAC	2 cut(s)	748, 777
HinfI	GANTC	3 cut(s)	257, 561, 703
HpaI	GTTAAC	1 cut(s)	777
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	756, 766
Hpy166II	GTNNAC	6 cut(s)	44, 73, 463, 580, 748, 777
Hpy188I	TCNGA	4 cut(s)	132, 256, 429, 636
Hpy188III	TCNNGA	2 cut(s)	382, 610
Hpy8I	GTNNAC	6 cut(s)	44, 73, 463, 580, 748, 777
Hpy99I	CGWCG	2 cut(s)	383, 578
HpyAV	CCTTC	5 cut(s)	122, 532, 677, 820, 955
HpyCH4III	ACNGT	2 cut(s)	68, 460
HpyCH4IV	ACGT	3 cut(s)	309, 576, 647
HpyCH4V	TGCA	2 cut(s)	715, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 411, 955
HpyF3I	CTNAG	4 cut(s)	197, 292, 728, 867
HpySE526I	ACGT	3 cut(s)	309, 576, 647
Hsp92II	CATG	4 cut(s)	85, 403, 442, 754
HspAI	GCGC	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	690
KspAI	GTTAAC	1 cut(s)	777
Kzo9I	GATC	3 cut(s)	132, 429, 642
LguI	GCTCTTC	2 cut(s)	58, 113
LmnI	GCTCC	4 cut(s)	23, 96, 356, 456
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	3 cut(s)	414, 945, 990
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	3 cut(s)	309, 576, 647
MaeIII	GTNAC	1 cut(s)	762
MalI	GATC	3 cut(s)	134, 431, 644
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	3 cut(s)	132, 429, 642
MboII	GAAGA	7 cut(s)	45, 100, 107, 481, 847, 868, 932
MfeI	CAATTG	1 cut(s)	587
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	2 cut(s)	557, 930
MluCI	AATT	7 cut(s)	211, 220, 313, 546, 587, 617, 796
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	5 cut(s)	118, 213, 355, 407, 614
MseI	TTAA	3 cut(s)	776, 900, 981
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	4 cut(s)	28, 566, 768, 907
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	4 cut(s)	28, 566, 768, 907
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	57, 411, 955
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	3 cut(s)	132, 429, 642
NlaIII	CATG	4 cut(s)	85, 403, 442, 754
NlaIV	GGNNCC	5 cut(s)	25, 431, 465, 554, 688
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	762
NspI	RCATGY	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	38
PciI	ACATGT	1 cut(s)	438
PciSI	GCTCTTC	2 cut(s)	58, 113
PcsI	WCGNNNNNNNCGW	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	257, 703
PkrI	GCNGC	2 cut(s)	450, 594
PleI	GAGTC	1 cut(s)	555
PmaCI	CACGTG	1 cut(s)	648
PmlI	CACGTG	1 cut(s)	648
PpsI	GAGTC	1 cut(s)	555
Ppu21I	YACGTR	1 cut(s)	648
PpuMI	RGGWCCY	2 cut(s)	283, 511
PscI	ACATGT	1 cut(s)	438
Psp5II	RGGWCCY	2 cut(s)	283, 511
Psp6I	CCWGG	4 cut(s)	26, 564, 766, 905
PspCI	CACGTG	1 cut(s)	648
PspEI	GGTNACC	1 cut(s)	762
PspGI	CCWGG	4 cut(s)	26, 564, 766, 905
PspN4I	GGNNCC	5 cut(s)	25, 431, 465, 554, 688
PspPI	GGNCC	4 cut(s)	283, 463, 511, 594
PspPPI	RGGWCCY	2 cut(s)	283, 511
PsuI	RGATCY	1 cut(s)	429
RsaI	GTAC	4 cut(s)	13, 443, 688, 872
RsaNI	GTAC	4 cut(s)	12, 442, 687, 871
SapI	GCTCTTC	2 cut(s)	58, 113
SaqAI	TTAA	3 cut(s)	776, 900, 981
SatI	GCNGC	2 cut(s)	449, 593
Sau3AI	GATC	3 cut(s)	132, 429, 642
Sau96I	GGNCC	4 cut(s)	283, 463, 511, 594
ScaI	AGTACT	1 cut(s)	872
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	4 cut(s)	28, 566, 768, 907
SduI	GDGCHC	2 cut(s)	557, 930
SfaNI	GCATC	3 cut(s)	414, 945, 990
SinI	GGWCC	3 cut(s)	283, 463, 511
SmlI	CTYRAG	2 cut(s)	120, 371
SmoI	CTYRAG	2 cut(s)	120, 371
Sse9I	AATT	7 cut(s)	211, 220, 313, 546, 587, 617, 796
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	8 cut(s)	226, 274, 349, 446, 467, 592, 597, 949
SspMI	CTAG	1 cut(s)	558
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	4 cut(s)	26, 564, 766, 905
StyI	CCWWGG	2 cut(s)	18, 399
TaaI	ACNGT	2 cut(s)	68, 460
TaiI	ACGT	3 cut(s)	312, 579, 650
TaqI	TCGA	7 cut(s)	381, 408, 435, 492, 641, 674, 1017
TaqII	GACCGA	3 cut(s)	413, 629, 1003
TasI	AATT	7 cut(s)	211, 220, 313, 546, 587, 617, 796
TatI	WGTACW	2 cut(s)	11, 870
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	2 cut(s)	257, 703
Tru1I	TTAA	3 cut(s)	776, 900, 981
Tru9I	TTAA	3 cut(s)	776, 900, 981
TscAI	CASTG	3 cut(s)	73, 463, 973
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	762
TspDTI	ATGAA	1 cut(s)	848
TspGWI	ACGGA	3 cut(s)	367, 550, 933
TspRI	CASTG	3 cut(s)	73, 463, 973
VpaK11BI	GGWCC	3 cut(s)	283, 463, 511
XagI	CCTNNNNNAGG	1 cut(s)	824
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	1 cut(s)	558
ZrmI	AGTACT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.