Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8324741.1

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Reverse (-)

166 .. 958

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8324741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 793 bp

ccaccaccacccaaccacccccaccgactccggcatcctcttccgcgaaaagctcatctacctcgaaacccacctcaacgtcaatccccgaaaagccctccatctaaacccggacttccgctcctgccccctctcctccgtcaagtccgtcgagcactgcctctcctccatgggcatcgagctctccgccatgggccgcatcctggacatgcacccccagctcctcaccgtggacccccactcccacctctaccccgtcttcgacttcctcctccacgacgcccatatccccttccacgatatccgcaagtccatcatccgctgccccaggctcctcgtctgtgacgtcagcgaccaactccgaccggccttggagttcctgacccaactaggttttaagggcgtgacgtgccagaccacggtcctattggtctcgagcgtcagaggtacccttttgcccaagattgagtatttgcagagtctggggctgagtcacgcggaggtggccaacatggtgataaggtcgccggcgctgttgactctaagcatacacaacaatttcatgccgaaagtcgagtatttagtgcaagagatgaagaaggatgtgaaggagctcaagaggtttccgcagtacttttcgtttagtttggaggggaggattaagcctaggcacagattgttggctgagcacggcttttcgcttccgttgagggacatgttgagggttagtgatggcgagtttaatgctatgttgattgagatgcgattggattgcagaggcttgactcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

263

Amino Acids

30.1

Weight (kDa)

8.54

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	349
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	447
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	2 cut(s)	46, 498
AciI	CCGC	8 cut(s)	44, 119, 187, 197, 305, 320, 498, 627
AcoI	YGGCCR	1 cut(s)	505
AcyI	GRCGYC	2 cut(s)	280, 346
AfaI	GTAC	2 cut(s)	449, 633
AfiI	CCNNNNNNNGG	3 cut(s)	203, 230, 419
AflIII	ACRYGT	1 cut(s)	715
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	202, 327
AluBI	AGCT	4 cut(s)	53, 182, 221, 614
AluI	AGCT	4 cut(s)	53, 182, 221, 614
Alw21I	GWGCWC	4 cut(s)	157, 184, 616, 691
Alw26I	GTCTC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	194, 367, 505
ApeKI	GCWGC	1 cut(s)	322
Asp718I	GGTACC	1 cut(s)	447
AspA2I	CCTAGG	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	3 cut(s)	194, 233, 422
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	218, 527
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	233, 422
AvrII	CCTAGG	1 cut(s)	666
BalI	TGGCCA	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	447
BanII	GRGCYC	2 cut(s)	184, 616
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	4 cut(s)	157, 184, 616, 691
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	109, 321, 726
BceAI	ACGGC	1 cut(s)	707
BcgI	CGANNNNNNTGC	4 cut(s)	726, 754, 760, 788
BciT130I	CCWGG	2 cut(s)	204, 329
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	2 cut(s)	390, 667
BfoI	RGCGCY	1 cut(s)	534
BisI	GCNGC	2 cut(s)	197, 323
BlnI	CCTAGG	1 cut(s)	666
BlpI	GCTNAGC	1 cut(s)	685
BlsI	GCNGC	2 cut(s)	198, 324
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	3 cut(s)	111, 204, 329
Bme18I	GGWCC	2 cut(s)	233, 422
BmeT110I	CYCGRG	1 cut(s)	434
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	3 cut(s)	194, 233, 422
BmiI	GGNNCC	3 cut(s)	235, 333, 449
BmrFI	CCNGG	3 cut(s)	111, 204, 329
BmsI	GCATC	4 cut(s)	43, 184, 208, 751
BoxI	GACNNNNGTC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	251
Bpu1102I	GCTNAGC	1 cut(s)	685
BpuEI	CTTGAG	1 cut(s)	600
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	2 cut(s)	280, 346
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	7 cut(s)	169, 190, 229, 327, 370, 418, 666
BsaXI	ACNNNNNCTCC	6 cut(s)	105, 135, 147, 177, 225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 230, 419
Bse118I	RCCGGY	2 cut(s)	365, 527
BseBI	CCWGG	2 cut(s)	204, 329
BseDI	CCNNGG	7 cut(s)	169, 190, 229, 327, 370, 418, 666
BseGI	GGATG	4 cut(s)	34, 199, 316, 608
BseLI	CCNNNNNNNGG	3 cut(s)	203, 230, 419
BseMII	CTCAG	2 cut(s)	480, 676
BseRI	GAGGAG	5 cut(s)	125, 155, 213, 261, 324
BseXI	GCAGC	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	46, 498
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	196, 369, 507
BshNI	GGYRCC	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	4 cut(s)	157, 184, 616, 691
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	4 cut(s)	31, 111, 366, 528
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	3 cut(s)	203, 230, 419
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	726
BsnI	GGCC	3 cut(s)	196, 369, 507
Bso31I	GGTCTC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	4 cut(s)	157, 184, 616, 691
Bsp1720I	GCTNAGC	1 cut(s)	685
Bsp19I	CCATGG	2 cut(s)	169, 190
BspACI	CCGC	8 cut(s)	44, 119, 187, 197, 305, 320, 498, 627
BspANI	GGCC	3 cut(s)	196, 369, 507
BspCNI	CTCAG	2 cut(s)	481, 677
BspFNI	CGCG	2 cut(s)	46, 498
BspLI	GGNNCC	3 cut(s)	235, 333, 449
BspT107I	GGYRCC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	2 cut(s)	365, 527
BssAI	RCCGGY	2 cut(s)	365, 527
BssECI	CCNNGG	7 cut(s)	169, 190, 229, 327, 370, 418, 666
BssNI	GRCGYC	2 cut(s)	280, 346
BssT1I	CCWWGG	4 cut(s)	169, 190, 370, 666
Bst2UI	CCWGG	2 cut(s)	204, 329
Bst4CI	ACNGT	2 cut(s)	230, 422
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	2 cut(s)	280, 346
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	3 cut(s)	489, 543, 685
BstDSI	CCRYGG	4 cut(s)	169, 190, 229, 418
BstF5I	GGATG	4 cut(s)	34, 199, 316, 608
BstFNI	CGCG	2 cut(s)	46, 498
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstMAI	GTCTC	1 cut(s)	437
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 409, 504
BstNI	CCWGG	2 cut(s)	204, 329
BstNSI	RCATGY	2 cut(s)	212, 719
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	109, 202, 327
BstUI	CGCG	2 cut(s)	46, 498
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	196, 369, 507
BtgI	CCRYGG	4 cut(s)	169, 190, 229, 418
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	4 cut(s)	34, 199, 316, 608
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	2 cut(s)	365, 527
Cfr13I	GGNCC	3 cut(s)	194, 233, 422
CseI	GACGC	2 cut(s)	288, 428
Csp6I	GTAC	2 cut(s)	448, 632
CviAII	CATG	6 cut(s)	170, 191, 209, 512, 563, 716
CviQI	GTAC	2 cut(s)	448, 632
DdeI	CTNAG	3 cut(s)	489, 543, 685
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	2 cut(s)	182, 614
Eco130I	CCWWGG	4 cut(s)	169, 190, 370, 666
Eco24I	GRGCYC	2 cut(s)	184, 616
Eco31I	GGTCTC	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	233, 422
Eco53kI	GAGCTC	2 cut(s)	182, 614
Eco88I	CYCGRG	1 cut(s)	434
EcoICRI	GAGCTC	2 cut(s)	182, 614
EcoRII	CCWGG	2 cut(s)	202, 327
EcoRV	GATATC	1 cut(s)	302
EcoT14I	CCWWGG	4 cut(s)	169, 190, 370, 666
EcoT38I	GRGCYC	2 cut(s)	184, 616
ErhI	CCWWGG	4 cut(s)	169, 190, 370, 666
FaeI	CATG	6 cut(s)	173, 194, 212, 515, 566, 719
FaiI	YATR	9 cut(s)	171, 192, 210, 286, 513, 549, 564, 717, 750
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	6 cut(s)	169, 190, 208, 511, 562, 715
Fnu4HI	GCNGC	2 cut(s)	197, 323
FokI	GGATG	4 cut(s)	21, 186, 303, 615
FriOI	GRGCYC	2 cut(s)	184, 616
Fsp4HI	GCNGC	2 cut(s)	197, 323
FspBI	CTAG	2 cut(s)	390, 667
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	197, 323
GsaI	CCCAGC	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	196, 369, 507
HapII	CCGG	4 cut(s)	31, 111, 366, 528
HgaI	GACGC	2 cut(s)	288, 428
HhaI	GCGC	1 cut(s)	533
Hin1I	GRCGYC	2 cut(s)	280, 346
Hin1II	CATG	6 cut(s)	173, 194, 212, 515, 566, 719
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	5 cut(s)	27, 479, 491, 539, 785
HpaII	CCGG	4 cut(s)	31, 111, 366, 528
HphI	GGTGA	2 cut(s)	218, 527
Hpy166II	GTNNAC	2 cut(s)	233, 538
Hpy188I	TCNGA	2 cut(s)	363, 444
Hpy188III	TCNNGA	3 cut(s)	380, 434, 617
Hpy8I	GTNNAC	2 cut(s)	233, 538
Hpy99I	CGWCG	2 cut(s)	153, 282
HpyAV	CCTTC	3 cut(s)	302, 593, 602
HpyCH4III	ACNGT	2 cut(s)	230, 422
HpyCH4IV	ACGT	3 cut(s)	79, 346, 408
HpyCH4V	TGCA	4 cut(s)	212, 476, 587, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 409, 504
HpyF3I	CTNAG	3 cut(s)	489, 543, 685
HpySE526I	ACGT	3 cut(s)	79, 346, 408
Hsp92I	GRCGYC	2 cut(s)	280, 346
Hsp92II	CATG	6 cut(s)	173, 194, 212, 515, 566, 719
HspAI	GCGC	1 cut(s)	531
KpnI	GGTACC	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
LmnI	GCTCC	4 cut(s)	126, 226, 337, 611
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	4 cut(s)	43, 184, 208, 751
MaeI	CTAG	2 cut(s)	390, 667
MaeII	ACGT	3 cut(s)	79, 346, 408
MaeIII	GTNAC	3 cut(s)	342, 404, 492
MbiI	CCGCTC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	32, 251, 608
MhlI	GDGCHC	4 cut(s)	157, 184, 616, 691
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	1 cut(s)	557
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	5 cut(s)	21, 488, 500, 533, 779
MmeI	TCCRAC	1 cut(s)	386
Mox20I	TGGCCA	1 cut(s)	507
MreI	CGCCGGCG	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	4 cut(s)	397, 661, 742, 791
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	4 cut(s)	31, 111, 366, 528
MspR9I	CCNGG	3 cut(s)	111, 204, 329
MvaI	CCWGG	2 cut(s)	204, 329
MvnI	CGCG	2 cut(s)	46, 498
MwoI	GCNNNNNNNGC	3 cut(s)	218, 409, 504
NaeI	GCCGGC	1 cut(s)	529
NciI	CCSGG	1 cut(s)	111
NcoI	CCATGG	2 cut(s)	169, 190
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	6 cut(s)	173, 194, 212, 515, 566, 719
NlaIV	GGNNCC	3 cut(s)	235, 333, 449
NmuCI	GTSAC	3 cut(s)	342, 404, 492
NspI	RCATGY	2 cut(s)	212, 719
PaeR7I	CTCGAG	1 cut(s)	434
PciI	ACATGT	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	529
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	198, 324
PleI	GAGTC	5 cut(s)	21, 487, 499, 533, 779
PpsI	GAGTC	5 cut(s)	21, 487, 499, 533, 779
PscI	ACATGT	1 cut(s)	715
PshAI	GACNNNNGTC	1 cut(s)	420
Psp124BI	GAGCTC	2 cut(s)	184, 616
Psp6I	CCWGG	2 cut(s)	202, 327
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	2 cut(s)	202, 327
PspN4I	GGNNCC	3 cut(s)	235, 333, 449
PspPI	GGNCC	3 cut(s)	194, 233, 422
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	449, 633
RsaNI	GTAC	2 cut(s)	448, 632
SacI	GAGCTC	2 cut(s)	184, 616
SaqAI	TTAA	4 cut(s)	397, 661, 742, 791
SatI	GCNGC	2 cut(s)	197, 323
Sau96I	GGNCC	3 cut(s)	194, 233, 422
ScaI	AGTACT	1 cut(s)	633
SchI	GAGTC	5 cut(s)	21, 488, 500, 533, 779
ScrFI	CCNGG	3 cut(s)	111, 204, 329
SduI	GDGCHC	4 cut(s)	157, 184, 616, 691
SfaNI	GCATC	4 cut(s)	43, 184, 208, 751
Sfr274I	CTCGAG	1 cut(s)	434
SgrAI	CRCCGGYG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	233, 422
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	434, 615
SmoI	CTYRAG	2 cut(s)	434, 615
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	8 cut(s)	44, 119, 187, 197, 305, 320, 498, 627
SspMI	CTAG	2 cut(s)	390, 667
SstI	GAGCTC	2 cut(s)	184, 616
StyD4I	CCNGG	3 cut(s)	109, 202, 327
StyI	CCWWGG	4 cut(s)	169, 190, 370, 666
TaaI	ACNGT	2 cut(s)	230, 422
TaiI	ACGT	3 cut(s)	82, 349, 411
TaqI	TCGA	6 cut(s)	64, 151, 178, 262, 435, 574
TasI	AATT	1 cut(s)	557
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	4 cut(s)	397, 661, 742, 791
Tru9I	TTAA	4 cut(s)	397, 661, 742, 791
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	3 cut(s)	342, 404, 492
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	3 cut(s)	342, 404, 492
TspDTI	ATGAA	2 cut(s)	551, 609
TspGWI	ACGGA	3 cut(s)	128, 137, 694
TspRI	CASTG	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	233, 422
XceI	RCATGY	2 cut(s)	212, 719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	666
XspI	CTAG	2 cut(s)	390, 667
ZraI	GACGTC	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.