Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004365

Physical Location & Seq

Genomic Coordinates Reverse (-)

1164843 .. 1167115

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGTCAGTAATGGATGAATCAGGCATGTTTAACGTTCAACAAACCATTGGAAGTGTATTGTGTTGCAAGTGTGGTGTTCCCATGGCACCAAACGCAGCCAACATGTGTGTGAATTGTCTTCGTTCCGAAGTCGATATCACCGAAGGTTTACAGAAGAGTATTCAGATCTTCTATTGCCCTGAATGCACTTGTTACTTACAGCCACCAAAGACTTGGATCAAATGTCAATGGGAATCTAAAGAGCTTTTGACATTTTGTATCAAGAGGTTGAAGAATCTCAATAAGGTTAAGCTGAAGAACGCTGAATTCGTTTGGACTGAGCCTCATTCCAAGAGGATTAAGGTTAAGTTGACTGTTCAAGCTGAGGTTCTTAATGGTGCTGTTCTTGAACAGTCTTATCCTGTTGAGTATACGGTTAGGGATAATCTGTGCGAGTCGTGTTCGAGGTTTCAGGCTAATCCTGATCAGTGGGTTGCTTCTATTCAGCTTAGGCAGCATGTTTCGCATAGGAGGACTTTCTTTTATCTCGAACAGTTGATTCTTAGGCACGATGCTGCTTCACGTGCCATTAGAATCCAGCAGGTGGATCAGGGGATTGATTTCTTCTTTGGGAATAAAAGTCATGCTAATAGCTTTGTGGAGTTTCTGAGGAAAGTTGTCCCCATTGAATACCGTCAGGACCAACAGCTGGTGTCTCATGATGTGAAAAGCAGTTTGTACAACTATAAGTACACTTACTCTGTTAAGATCTGTCCTGTTTGCCGTGAGGATCTTGTTTGCTTGCCTTCTAAAGTTGCTAGCGGCTTGGGGAACCTTGGTCCACTTGTGGTTTGCACAAAAGTCTCTGATAATATCACTCTACTTGATCCGAGAACTCTAAGGTGTGCCTTCTTGGATGCGAGACAGTACTGGAGGTCTGGGTTCCGATCTGCGCTCACCAGTAGACAACTTGTCAAGTACTTTGTGTTTGATGTTGAGCCACCTGTTGGTGAAGCGACTGTTGGTGGGCAAAAGTACGCTCTTTCCTATGTCCAGATTGCCCGTGAATCAGACATTGGTAAGATGTTTTATGTCCAAACTCATCTTGGACACATTCTGAAACCTGGGGATCAAGCTTTGGGTTATGACATCTACGGAGCTAATGTGAACGACAATGAAATGGAGAAATACCGTCTGAGTGTGAAGAATGGGCTTCCTGAAGCAATTCTGATCAAGAAATGTTACGAGGAGCAGAGAGAGAGGAAGCAGAAGAAATCCCGTAACTGGAAACTCAAGTCGCTTCCAATGGAAATGGATGATTCAAGAGGCAGGGTTGATCCAGAGAAGACAGACAAAGAATACGAAGAGTTTTTGAGGGATCTTGAAGAAAACCCTGAGCTAAGGTTCAACATATCTTTGTACAGGGACAAGGATTATCAAGCTTCTGAGACTGCTTCAATGACAGATGGAGAAGGTGCACCATCTGTTCCAATTGAAGAGTTGCTTGCTGACCTTGACCTAAGCTTTGAGGAAGAAGACGATGATGACGAGGACGACATGGCTGCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

NMD3

Protein Analysis

516

Amino Acids

59.29

Weight (kDa)

5.55

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NMD3	PF04981	21 - 250	3.3e-76	NMD3 family
NMD_SH3	PF21193	253 - 296	8.5e-18	NMD3 SH3 domain
OB_NMD3	PF21192	317 - 406	4.3e-21	NMD3 OB-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03820
fragaria_vesca	FvH4_1g26190 FvH4_1g26190 FvH4_4g00390 FvH4_4g00390
prunus_persica	Prupe.4G217800_v2.0.a1 Prupe.4G217800_v2.0.a1 Prupe.4G273200_v2.0.a1
pyrus_communis	pycom04g00430
rosa_chinensis	RchiOBHm_Chr3g0485681 RchiOBHm_Chr3g0485701 RchiOBHm_Chr4g0385341
rosa_laevigata	RLG00000010236 RLG00000023132
rosa_multiflora	Rmu_sc0001259.1_g000008 Rmu_sc0003005.1_g000028
rosa_roxburghii	Rroxscaffold_5G00333270 Rroxscaffold_6G00396510 Rroxscaffold_6G00396820 Rroxscaffold_6G00396840
rosa_rugosa	Rorug03G0220700 Rorug03G0300500
rosa_samantha	Rh3AG269900 Rh3BG305700 Rh3CG303800 Rh3DG300100 Rh4AG004200 Rh4BG003600 Rh4CG005300 Rh4DG003800
rosa_wichuraiana	Rw3G024040 Rw4G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
Acc36I	ACCTGC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	85
AccB7I	CCANNNNNTGG	3 cut(s)	583, 688, 986
AccI	GTMKAC	2 cut(s)	410, 943
AciI	CCGC	1 cut(s)	801
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	7 cut(s)	224, 594, 777, 860, 1116, 1310, 1365
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	2 cut(s)	314, 1218
AcvI	CACGTG	1 cut(s)	563
AfaI	GTAC	6 cut(s)	719, 731, 908, 959, 1016, 1400
AfiI	CCNNNNNNNGG	4 cut(s)	583, 688, 986, 1263
AflIII	ACRYGT	1 cut(s)	102
AhdI	GACNNNNNGTC	1 cut(s)	950
AjnI	CCWGG	1 cut(s)	1102
AjuI	GAANNNNNNNTTGG	4 cut(s)	984, 1016, 1038, 1070
Alw21I	GWGCWC	1 cut(s)	1459
Alw26I	GTCTC	4 cut(s)	699, 847, 895, 1421
Alw44I	GTGCAC	1 cut(s)	1455
AlwI	GGATC	7 cut(s)	224, 594, 777, 860, 1116, 1310, 1365
ApaLI	GTGCAC	1 cut(s)	1455
ApeKI	GCWGC	4 cut(s)	95, 493, 554, 1541
ApoI	RAATTY	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	1487, 1519
Asp700I	GAANNNNTTC	1 cut(s)	1203
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	2 cut(s)	679, 818
AsuHPI	GGTGA	3 cut(s)	130, 928, 1001
AsuNHI	GCTAGC	1 cut(s)	797
AvaII	GGWCC	2 cut(s)	679, 818
BaeGI	GKGCMC	1 cut(s)	1459
BanI	GGYRCC	1 cut(s)	85
BbrPI	CACGTG	1 cut(s)	563
BbsI	GAAGAC	3 cut(s)	110, 1331, 1521
Bbv12I	GWGCWC	1 cut(s)	1459
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	107, 505, 541, 1528
BccI	CCATC	2 cut(s)	1439, 1468
BceAI	ACGGC	1 cut(s)	747
BcgI	CGANNNNNNTGC	1 cut(s)	1523
BciT130I	CCWGG	1 cut(s)	1104
BclI	TGATCA	2 cut(s)	463, 1209
BcoDI	GTCTC	4 cut(s)	699, 847, 895, 1421
BfaI	CTAG	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	571
BglII	AGATCT	2 cut(s)	165, 747
BisI	GCNGC	5 cut(s)	96, 494, 555, 802, 1542
BlsI	GCNGC	5 cut(s)	97, 495, 556, 803, 1543
BmcAI	AGTACT	2 cut(s)	908, 959
Bme1390I	CCNGG	1 cut(s)	1104
Bme18I	GGWCC	2 cut(s)	679, 818
BmeRI	GACNNNNNGTC	1 cut(s)	950
BmgT120I	GGNCC	2 cut(s)	679, 818
BmiI	GGNNCC	3 cut(s)	87, 812, 923
BmrFI	CCNGG	1 cut(s)	1104
BmsI	GCATC	2 cut(s)	541, 886
BmtI	GCTAGC	1 cut(s)	801
BpiI	GAAGAC	3 cut(s)	110, 1331, 1521
BpmI	CTGGAG	1 cut(s)	931
Bpu10I	CCTNAGC	5 cut(s)	363, 488, 1374, 1379, 1499
BpuEI	CTTGAG	1 cut(s)	1256
BsaAI	YACGTR	1 cut(s)	563
BsaJI	CCNNGG	3 cut(s)	81, 814, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	1128, 1158
Bsc4I	CCNNNNNNNGG	4 cut(s)	583, 688, 986, 1263
Bse1I	ACTGG	3 cut(s)	914, 939, 1268
BseBI	CCWGG	1 cut(s)	1104
BseDI	CCNNGG	3 cut(s)	81, 814, 1103
BseGI	GGATG	3 cut(s)	19, 901, 1300
BseLI	CCNNNNNNNGG	4 cut(s)	583, 688, 986, 1263
BseMII	CTCAG	6 cut(s)	309, 354, 638, 1166, 1365, 1416
BseNI	ACTGG	3 cut(s)	914, 939, 1268
BseRI	GAGGAG	1 cut(s)	1241
BseSI	GKGCMC	1 cut(s)	1459
BseXI	GCAGC	4 cut(s)	107, 505, 541, 1528
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	1459
BslFI	GGGAC	2 cut(s)	644, 1418
BslI	CCNNNNNNNGG	4 cut(s)	583, 688, 986, 1263
BsmAI	GTCTC	4 cut(s)	699, 847, 895, 1421
BsmFI	GGGAC	2 cut(s)	644, 1418
BsmI	GAATGC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	1459
Bsp1407I	TGTACA	2 cut(s)	717, 1398
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	1 cut(s)	801
BspCNI	CTCAG	6 cut(s)	310, 355, 639, 1167, 1366, 1417
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	3 cut(s)	87, 812, 923
BspMI	ACCTGC	1 cut(s)	571
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	7 cut(s)	224, 594, 777, 860, 1116, 1310, 1365
BspT107I	GGYRCC	1 cut(s)	85
BsrGI	TGTACA	2 cut(s)	717, 1398
BsrI	ACTGG	3 cut(s)	914, 939, 1268
BssECI	CCNNGG	3 cut(s)	81, 814, 1103
BssNAI	GTATAC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	81, 814
Bst1107I	GTATAC	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	1104
Bst4CI	ACNGT	8 cut(s)	355, 393, 415, 534, 674, 906, 1000, 1172
Bst6I	CTCTTC	3 cut(s)	149, 1338, 1470
BstAUI	TGTACA	2 cut(s)	717, 1398
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	782, 799, 1485
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	19, 901, 1300
BstHHI	GCGC	1 cut(s)	934
BstMAI	GTCTC	4 cut(s)	699, 847, 895, 1421
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 183, 493, 502, 563
BstNI	CCWGG	1 cut(s)	1104
BstNSI	RCATGY	3 cut(s)	28, 106, 500
BstSCI	CCNGG	1 cut(s)	1102
BstSLI	GKGCMC	1 cut(s)	1459
BstV1I	GCAGC	4 cut(s)	107, 505, 541, 1528
BstV2I	GAAGAC	3 cut(s)	110, 1331, 1521
BstX2I	RGATCY	4 cut(s)	165, 747, 769, 1357
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	4 cut(s)	165, 747, 769, 1357
BstZ17I	GTATAC	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	19, 901, 1300
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	782, 799, 1485
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	1 cut(s)	934
Cfr13I	GGNCC	2 cut(s)	679, 818
Csp6I	GTAC	6 cut(s)	718, 730, 907, 958, 1015, 1399
CviAII	CATG	7 cut(s)	25, 82, 103, 497, 623, 698, 1537
CviQI	GTAC	6 cut(s)	718, 730, 907, 958, 1015, 1399
DriI	GACNNNNNGTC	1 cut(s)	950
Eam1104I	CTCTTC	3 cut(s)	149, 1338, 1470
Eam1105I	GACNNNNNGTC	1 cut(s)	950
EarI	CTCTTC	3 cut(s)	149, 1338, 1470
Eco130I	CCWWGG	2 cut(s)	81, 814
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	679, 818
Eco57I	CTGAAG	2 cut(s)	314, 1218
Eco72I	CACGTG	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	1102
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	81, 814
ErhI	CCWWGG	2 cut(s)	81, 814
FaeI	CATG	7 cut(s)	28, 85, 106, 500, 626, 701, 1540
FalI	AAGNNNNNCTT	2 cut(s)	1467, 1499
FaqI	GGGAC	2 cut(s)	644, 1418
FatI	CATG	7 cut(s)	24, 81, 102, 496, 622, 697, 1536
FbaI	TGATCA	2 cut(s)	463, 1209
FblI	GTMKAC	2 cut(s)	410, 943
Fnu4HI	GCNGC	5 cut(s)	96, 494, 555, 802, 1542
FokI	GGATG	3 cut(s)	26, 908, 1307
Fsp4HI	GCNGC	5 cut(s)	96, 494, 555, 802, 1542
FspBI	CTAG	1 cut(s)	798
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	5 cut(s)	96, 494, 555, 802, 1542
GsuI	CTGGAG	1 cut(s)	931
HhaI	GCGC	1 cut(s)	934
Hin1II	CATG	7 cut(s)	28, 85, 106, 500, 626, 701, 1540
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HindIII	AAGCTT	3 cut(s)	1113, 1419, 1501
HinfI	GANTC	8 cut(s)	17, 233, 274, 434, 538, 573, 1046, 1298
HphI	GGTGA	3 cut(s)	130, 928, 1001
Hpy166II	GTNNAC	8 cut(s)	149, 351, 411, 732, 821, 944, 1147, 1457
Hpy8I	GTNNAC	8 cut(s)	149, 351, 411, 732, 821, 944, 1147, 1457
HpyAV	CCTTC	4 cut(s)	137, 795, 898, 1445
HpyCH4III	ACNGT	8 cut(s)	355, 393, 415, 534, 674, 906, 1000, 1172
HpyCH4IV	ACGT	2 cut(s)	33, 562
HpyCH4V	TGCA	4 cut(s)	66, 186, 834, 1457
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 183, 493, 502, 563
HpySE526I	ACGT	2 cut(s)	33, 562
Hsp92II	CATG	7 cut(s)	28, 85, 106, 500, 626, 701, 1540
HspAI	GCGC	1 cut(s)	932
Ksp22I	TGATCA	2 cut(s)	463, 1209
LmnI	GCTCC	2 cut(s)	1136, 1228
Lsp1109I	GCAGC	4 cut(s)	107, 505, 541, 1528
LweI	GCATC	2 cut(s)	541, 886
MaeI	CTAG	1 cut(s)	798
MaeII	ACGT	2 cut(s)	33, 562
MaeIII	GTNAC	3 cut(s)	191, 1220, 1259
MfeI	CAATTG	1 cut(s)	1470
MflI	RGATCY	4 cut(s)	165, 747, 769, 1357
MhlI	GDGCHC	1 cut(s)	1459
MluCI	AATT	4 cut(s)	112, 305, 1203, 1470
MlyI	GAGTC	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	1203
MseI	TTAA	6 cut(s)	30, 288, 339, 345, 372, 744
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	688
MspR9I	CCNGG	1 cut(s)	1104
MunI	CAATTG	1 cut(s)	1470
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	5 cut(s)	92, 183, 493, 502, 563
NcoI	CCATGG	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	7 cut(s)	28, 85, 106, 500, 626, 701, 1540
NlaIV	GGNNCC	3 cut(s)	87, 812, 923
NspI	RCATGY	3 cut(s)	28, 106, 500
PagI	TCATGA	1 cut(s)	697
PaqCI	CACCTGC	1 cut(s)	571
PciI	ACATGT	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 306, 1524
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	1203
PfeI	GAWTC	7 cut(s)	17, 233, 274, 538, 573, 1046, 1298
PflMI	CCANNNNNTGG	3 cut(s)	583, 688, 986
PkrI	GCNGC	5 cut(s)	97, 495, 556, 803, 1543
PleI	GAGTC	1 cut(s)	442
PmaCI	CACGTG	1 cut(s)	563
PmlI	CACGTG	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	442
Ppu21I	YACGTR	1 cut(s)	563
PscI	ACATGT	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	1102
PspCI	CACGTG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	1102
PspN4I	GGNNCC	3 cut(s)	87, 812, 923
PspPI	GGNCC	2 cut(s)	679, 818
PsuI	RGATCY	4 cut(s)	165, 747, 769, 1357
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	6 cut(s)	719, 731, 908, 959, 1016, 1400
RsaNI	GTAC	6 cut(s)	718, 730, 907, 958, 1015, 1399
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	6 cut(s)	30, 288, 339, 345, 372, 744
SatI	GCNGC	5 cut(s)	96, 494, 555, 802, 1542
Sau96I	GGNCC	2 cut(s)	679, 818
ScaI	AGTACT	2 cut(s)	908, 959
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	1104
SduI	GDGCHC	1 cut(s)	1459
SfaNI	GCATC	2 cut(s)	541, 886
SinI	GGWCC	2 cut(s)	679, 818
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	1271
SmoI	CTYRAG	1 cut(s)	1271
Sse9I	AATT	4 cut(s)	112, 305, 1203, 1470
SsiI	CCGC	1 cut(s)	801
SspMI	CTAG	1 cut(s)	798
StyD4I	CCNGG	1 cut(s)	1102
StyI	CCWWGG	2 cut(s)	81, 814
TaaI	ACNGT	8 cut(s)	355, 393, 415, 534, 674, 906, 1000, 1172
TaiI	ACGT	2 cut(s)	36, 565
TaqI	TCGA	3 cut(s)	132, 443, 528
TasI	AATT	4 cut(s)	112, 305, 1203, 1470
TatI	WGTACW	5 cut(s)	717, 729, 906, 957, 1398
TauI	GCSGC	1 cut(s)	804
TfiI	GAWTC	7 cut(s)	17, 233, 274, 538, 573, 1046, 1298
Tru1I	TTAA	6 cut(s)	30, 288, 339, 345, 372, 744
Tru9I	TTAA	6 cut(s)	30, 288, 339, 345, 372, 744
TscAI	CASTG	1 cut(s)	473
TseI	GCWGC	4 cut(s)	95, 493, 554, 1541
TspDTI	ATGAA	2 cut(s)	30, 1170
TspGWI	ACGGA	1 cut(s)	1149
TspRI	CASTG	1 cut(s)	473
Van91I	CCANNNNNTGG	3 cut(s)	583, 688, 986
VneI	GTGCAC	1 cut(s)	1455
VpaK11BI	GGWCC	2 cut(s)	679, 818
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	3 cut(s)	28, 106, 500
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 1082
XmiI	GTMKAC	2 cut(s)	410, 943
XmnI	GAANNNNTTC	1 cut(s)	1203
XspI	CTAG	1 cut(s)	798
ZrmI	AGTACT	2 cut(s)	908, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.