Rh3CG303800

Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
31591733 .. 31594331
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG303800.1

Sequence Viewer

Length: 1545 bp
ATGGATATAGATACGGGTATGTTTACGGTTCCTCAAACTGTTGGCAGCGTACTGTGTTGCAAATGTGGTATTCCCATGGCACCAAATGCTGCCAATATGTGCGTCAAGTGTTTGCGCTCTGAAGTTGACATTACTGAAGGTTTGCAGAAGCATGTGACTATTGTGCATTGCCCTGAATGTGATACCTACTTGCAGCCTCCGAGAACTTGGATTAAAGCCCAACTAGAATCGAAGGAGCTGCTAACTTTCTGTGTGAAGAGACTGAAGAACTTGAATAAAATTAGGTTGGTTCATGCCGAATTCATTTGGACTGAACCTCACTCCAAGAGGATCAAGGTTAAGTTGGTAGTTCAGAAGGAAGTTCTTAATGGAGCAATACTTGAGCAATCATATACTGTTGAGTATGTTCAGCAAGAACATATGTGTGAGTCTTGTGCAAGAGTCCAAGCCAACCCTGACCAGTGGGTTGCAGCTGTACAGCTTCGCCAGCATGTTTCTCACAGACGCACTTTTTTCTATCTGGAGCAGCTGATTCTGAAGCATGGTGCTGCTGCCAGTGCCATAAAGATTACGCAGATGGACCAGGGTATCGATTTCTTTTTCTCAAACCGGAGTCATGGTGTGAAATTTGTGGAGTTTGTGGGTAAAGTTGCTCCAGTAAGGAGTCGTAATGACAAACAGCTGGTTTCCCAGGATTCTAAGAGTAATACTTATCATTACAAGTATACATTCTCAGTTGAAATCTCCCCCATTTGCCGTGAGGATTTGATCTGTCTGCCTCCCAAGGTTAGATCTAGTTTTGGGAATCTTGGTCCTCTAGTGATTTGCACTAAAGTGACTAACAGCATTGCTTTGCTTGATCCTTTGACCTTGAGGCATTGTTTCTTGGATGCTGATCAATATTGGAGGTCAAGCTTTAAGTCGCTGCATACGAGCCGGGAGTTAGTGGAGTATATAGTGCTCGATGTAGAGATGGTTTCATCTGAAGTTAATGTTGGTGGCACAAGGTATGCTTTAGCTGATGCACAAGTTGCCCGTGTGTCTGATTTTGGGAAGAATGACACTATTTTCAACATAAAAACACATATAGGCCATCTTTTAAACCCTGGGGATTATGCTCTTGGTTATGACTTATATGGGGCAAACAGTAATGACGAGGAACTAAACAAGTATAAGGGTCTAGTCATTCCAGATGTAATTTTGATAAAGAAGAGCTATGAAGAAAAGCGCCTGAAGAAGCGTGCAAAGCCTCGTGCATGGAAGCTTAAATCCCTAGCCATGGAAGTGGATGCTAAAGGTAGAGGCGCGCTAGAAAAGGAGGCCTTAGAGTATGAACAGTTCTTGAAAGATCTGGAAGAGAATCCTGAGTTCAGGTTCAATATTGATTTGTACCGTGATGAAGGATACCAGCCATCAGAGAAGGCATCTGTGACCAATGGGGAAGATGCACCTTTTGTGCCCTTTGATGAGTTGCTTGCTGACATGGATAACCTCCAATTAAGAGAGTATGAAGATGATGAGGACAGTGGCAGCATGAGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

514

Amino Acids

58.62

Weight (kDa)

6.11

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NMD3 PF04981 19 - 248 2.1e-76 NMD3 family
NMD_SH3 PF21193 251 - 295 1.2e-17 NMD3 SH3 domain
OB_NMD3 PF21192 315 - 404 8.8e-31 NMD3 OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 725
AccII CGCG 1 cut(s) 1307
AclWI GGATC 2 cut(s) 338, 854
AcsI RAATTY 2 cut(s) 299, 626
AcuI CTGAAG 6 cut(s) 141, 156, 284, 557, 1005, 1253
AfaI GTAC 3 cut(s) 51, 477, 1391
AfiI CCNNNNNNNGG 1 cut(s) 1279
AgsI TTSAA 5 cut(s) 274, 740, 1072, 1345, 1378
AjnI CCWGG 3 cut(s) 582, 690, 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
AleI CACNNNNGTG 1 cut(s) 833
AluBI AGCT 9 cut(s) 238, 473, 481, 529, 682, 915, 1019, 1215, 1264
AluI AGCT 9 cut(s) 238, 473, 481, 529, 682, 915, 1019, 1215, 1264
Alw21I GWGCWC 1 cut(s) 963
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 2 cut(s) 338, 854
AoxI GGCC 2 cut(s) 1090, 1320
ApoI RAATTY 2 cut(s) 299, 626
AspLEI GCGC 4 cut(s) 117, 1230, 1307, 1309
AspS9I GGNCC 2 cut(s) 580, 812
AsuC2I CCSGG 1 cut(s) 938
AvaII GGWCC 2 cut(s) 580, 812
BaeGI GKGCMC 1 cut(s) 1461
BaeI ACNNNNGTAYC 2 cut(s) 571, 604
BanI GGYRCC 1 cut(s) 79
BauI CACGAG 1 cut(s) 1251
Bbv12I GWGCWC 1 cut(s) 963
BbvI GCAGC 9 cut(s) 57, 76, 205, 225, 482, 535, 538, 538, 912
BccI CCATC 4 cut(s) 571, 967, 1101, 1420
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 3 cut(s) 584, 692, 1107
BciVI GTATCC 1 cut(s) 1397
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 6 cut(s) 224, 795, 818, 1181, 1274, 1310
BfoI RGCGCY 1 cut(s) 1231
BfuI GTATCC 1 cut(s) 1397
BglII AGATCT 2 cut(s) 791, 1348
Bme1390I CCNGG 4 cut(s) 584, 692, 938, 1107
Bme18I GGWCC 2 cut(s) 580, 812
BmgT120I GGNCC 2 cut(s) 580, 812
BmiI GGNNCC 2 cut(s) 30, 81
BmrFI CCNGG 4 cut(s) 584, 692, 938, 1107
BmsI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
BpmI CTGGAG 2 cut(s) 542, 639
BpuEI CTTGAG 2 cut(s) 401, 892
BpuMI CCSGG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 7 cut(s) 75, 583, 690, 783, 1105, 1106, 1278
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 1 cut(s) 1279
Bse1I ACTGG 3 cut(s) 460, 555, 656
Bse3DI GCAATG 2 cut(s) 166, 846
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 3 cut(s) 584, 692, 1107
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 7 cut(s) 75, 583, 690, 783, 1105, 1106, 1278
BseGI GGATG 2 cut(s) 895, 1294
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 1 cut(s) 1279
BseMI GCAATG 2 cut(s) 166, 846
BseMII CTCAG 2 cut(s) 747, 1356
BseNI ACTGG 3 cut(s) 460, 555, 656
BsePI GCGCGC 1 cut(s) 1305
BseSI GKGCMC 1 cut(s) 1461
BseXI GCAGC 9 cut(s) 57, 76, 205, 225, 482, 535, 538, 538, 912
Bsh1236I CGCG 1 cut(s) 1307
BshFI GGCC 2 cut(s) 1092, 1322
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 963
BsiSI CCGG 2 cut(s) 610, 937
BslI CCNNNNNNNGG 1 cut(s) 1279
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 2 cut(s) 1092, 1322
Bsp1286I GDGCHC 2 cut(s) 963, 1461
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
Bsp19I CCATGG 2 cut(s) 75, 1278
BspANI GGCC 2 cut(s) 1092, 1322
BspCNI CTCAG 2 cut(s) 746, 1357
BspDI ATCGAT 1 cut(s) 591
BspFNI CGCG 1 cut(s) 1307
BspLI GGNNCC 2 cut(s) 30, 81
BspPI GGATC 2 cut(s) 338, 854
BspQI GCTCTTC 1 cut(s) 1205
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 2 cut(s) 166, 846
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 3 cut(s) 460, 555, 656
BssECI CCNNGG 7 cut(s) 75, 583, 690, 783, 1105, 1106, 1278
BssHII GCGCGC 1 cut(s) 1305
BssMI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
BssNAI GTATAC 1 cut(s) 726
BssSI CACGAG 1 cut(s) 1251
BssT1I CCWWGG 3 cut(s) 75, 783, 1278
Bst1107I GTATAC 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 1251
Bst2UI CCWGG 3 cut(s) 584, 692, 1107
Bst4CI ACNGT 8 cut(s) 28, 40, 54, 397, 1148, 1338, 1394, 1526
Bst6I CTCTTC 3 cut(s) 251, 1205, 1350
BstAPI GCANNNNNTGC 2 cut(s) 86, 1031
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 488, 1242, 1307, 1476
BstDEI CTNAG 4 cut(s) 699, 733, 1324, 1365
BstDSI CCRYGG 2 cut(s) 75, 1278
BstF5I GGATG 2 cut(s) 895, 1294
BstFNI CGCG 1 cut(s) 1307
BstH2I RGCGCY 1 cut(s) 1231
BstHHI GCGC 4 cut(s) 117, 1230, 1307, 1309
BstKTI GATC 6 cut(s) 333, 771, 794, 862, 898, 1351
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
BstMWI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
BstNI CCWGG 3 cut(s) 584, 692, 1107
BstNSI RCATGY 2 cut(s) 155, 494
BstSCI CCNGG 4 cut(s) 582, 690, 936, 1105
BstSLI GKGCMC 1 cut(s) 1461
BstUI CGCG 1 cut(s) 1307
BstV1I GCAGC 9 cut(s) 57, 76, 205, 225, 482, 535, 538, 538, 912
BstX2I RGATCY 2 cut(s) 791, 1348
BstXI CCANNNNNNTGG 1 cut(s) 1285
BstYI RGATCY 2 cut(s) 791, 1348
BstZ17I GTATAC 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 591
BsuI GTATCC 1 cut(s) 1397
BsuRI GGCC 2 cut(s) 1092, 1322
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 2 cut(s) 75, 1278
BtsCI GGATG 2 cut(s) 895, 1294
BtsIMutI CAGTG 3 cut(s) 467, 562, 1531
Cac8I GCNNGC 4 cut(s) 488, 1242, 1307, 1476
CfoI GCGC 4 cut(s) 117, 1230, 1307, 1309
Cfr13I GGNCC 2 cut(s) 580, 812
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 2 cut(s) 91, 513
Csp6I GTAC 3 cut(s) 50, 476, 1390
CviQI GTAC 3 cut(s) 50, 476, 1390
DdeI CTNAG 4 cut(s) 699, 733, 1324, 1365
DpnI GATC 6 cut(s) 332, 770, 793, 861, 897, 1350
DpnII GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
DraI TTTAAA 1 cut(s) 1101
Eam1104I CTCTTC 3 cut(s) 251, 1205, 1350
EarI CTCTTC 3 cut(s) 251, 1205, 1350
Eco130I CCWWGG 3 cut(s) 75, 783, 1278
Eco147I AGGCCT 1 cut(s) 1322
Eco47I GGWCC 2 cut(s) 580, 812
Eco57I CTGAAG 6 cut(s) 141, 156, 284, 557, 1005, 1253
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 3 cut(s) 582, 690, 1105
EcoT14I CCWWGG 3 cut(s) 75, 783, 1278
ErhI CCWWGG 3 cut(s) 75, 783, 1278
FalI AAGNNNNNCTT 4 cut(s) 997, 1029, 1307, 1339
FauNDI CATATG 1 cut(s) 420
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 1 cut(s) 725
FokI GGATG 2 cut(s) 902, 1301
FspBI CTAG 6 cut(s) 224, 795, 818, 1181, 1274, 1310
GlaI GCGC 4 cut(s) 116, 1229, 1306, 1308
GsuI CTGGAG 2 cut(s) 542, 639
HaeII RGCGCY 1 cut(s) 1231
HaeIII GGCC 2 cut(s) 1092, 1322
HapII CCGG 2 cut(s) 610, 937
HgaI GACGC 2 cut(s) 91, 513
HhaI GCGC 4 cut(s) 117, 1230, 1307, 1309
Hin6I GCGC 4 cut(s) 115, 1228, 1305, 1307
HinP1I GCGC 4 cut(s) 115, 1228, 1305, 1307
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 2 cut(s) 913, 1262
HinfI GANTC 9 cut(s) 227, 428, 441, 532, 613, 664, 695, 805, 1360
HpaII CCGG 2 cut(s) 610, 937
Hpy166II GTNNAC 3 cut(s) 24, 127, 726
Hpy188I TCNGA 7 cut(s) 121, 201, 354, 537, 985, 1045, 1417
Hpy188III TCNNGA 5 cut(s) 521, 1190, 1342, 1352, 1364
Hpy8I GTNNAC 3 cut(s) 24, 127, 726
HpyAV CCTTC 5 cut(s) 131, 226, 349, 1394, 1414
HpyCH4III ACNGT 8 cut(s) 28, 40, 54, 397, 1148, 1338, 1394, 1526
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
HpyF3I CTNAG 4 cut(s) 699, 733, 1324, 1365
HspAI GCGC 4 cut(s) 115, 1228, 1305, 1307
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
LguI GCTCTTC 1 cut(s) 1205
LmnI GCTCC 4 cut(s) 235, 371, 523, 658
Lsp1109I GCAGC 9 cut(s) 57, 76, 205, 225, 482, 535, 538, 538, 912
LweI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
MaeI CTAG 6 cut(s) 224, 795, 818, 1181, 1274, 1310
MaeIII GTNAC 3 cut(s) 154, 835, 1429
MalI GATC 6 cut(s) 332, 770, 793, 861, 897, 1350
MboI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
MboII GAAGA 9 cut(s) 268, 277, 1066, 1222, 1232, 1246, 1367, 1454, 1523
MflI RGATCY 2 cut(s) 791, 1348
MhlI GDGCHC 2 cut(s) 963, 1461
MluCI AATT 5 cut(s) 279, 299, 626, 1197, 1496
MlyI GAGTC 4 cut(s) 437, 450, 622, 673
MseI TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
MslI CAYNNNNRTG 3 cut(s) 423, 833, 1283
MspA1I CMGCKG 3 cut(s) 473, 529, 682
MspI CCGG 2 cut(s) 610, 937
MspR9I CCNGG 4 cut(s) 584, 692, 938, 1107
MvaI CCWGG 3 cut(s) 584, 692, 1107
MvnI CGCG 1 cut(s) 1307
MwoI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
NciI CCSGG 1 cut(s) 938
NcoI CCATGG 2 cut(s) 75, 1278
NdeI CATATG 1 cut(s) 420
NdeII GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
NlaIV GGNNCC 2 cut(s) 30, 81
NmuCI GTSAC 3 cut(s) 154, 835, 1429
NspI RCATGY 2 cut(s) 155, 494
OliI CACNNNNGTG 1 cut(s) 833
PasI CCCWGGG 1 cut(s) 1106
PauI GCGCGC 1 cut(s) 1305
PceI AGGCCT 1 cut(s) 1322
PciSI GCTCTTC 1 cut(s) 1205
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PfeI GAWTC 5 cut(s) 227, 532, 695, 805, 1360
PleI GAGTC 4 cut(s) 436, 449, 621, 672
PpsI GAGTC 4 cut(s) 436, 449, 621, 672
Psp6I CCWGG 3 cut(s) 582, 690, 1105
PspGI CCWGG 3 cut(s) 582, 690, 1105
PspN4I GGNNCC 2 cut(s) 30, 81
PspPI GGNCC 2 cut(s) 580, 812
PsrI GAACNNNNNNTAC 2 cut(s) 1322, 1354
PsuI RGATCY 2 cut(s) 791, 1348
PteI GCGCGC 1 cut(s) 1305
PvuII CAGCTG 3 cut(s) 473, 529, 682
RsaI GTAC 3 cut(s) 51, 477, 1391
RsaNI GTAC 3 cut(s) 50, 476, 1390
RseI CAYNNNNRTG 3 cut(s) 423, 833, 1283
SapI GCTCTTC 1 cut(s) 1205
SaqAI TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
Sau3AI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
Sau96I GGNCC 2 cut(s) 580, 812
SchI GAGTC 4 cut(s) 437, 450, 622, 673
ScrFI CCNGG 4 cut(s) 584, 692, 938, 1107
SduI GDGCHC 2 cut(s) 963, 1461
SfaNI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
SinI GGWCC 2 cut(s) 580, 812
SmiMI CAYNNNNRTG 3 cut(s) 423, 833, 1283
SmlI CTYRAG 2 cut(s) 380, 871
SmoI CTYRAG 2 cut(s) 380, 871
Sse9I AATT 5 cut(s) 279, 299, 626, 1197, 1496
SseBI AGGCCT 1 cut(s) 1322
SspI AATATT 2 cut(s) 902, 1381
SspMI CTAG 6 cut(s) 224, 795, 818, 1181, 1274, 1310
StuI AGGCCT 1 cut(s) 1322
StyD4I CCNGG 4 cut(s) 582, 690, 936, 1105
StyI CCWWGG 3 cut(s) 75, 783, 1278
TaaI ACNGT 8 cut(s) 28, 40, 54, 397, 1148, 1338, 1394, 1526
TaqI TCGA 3 cut(s) 230, 591, 963
TasI AATT 5 cut(s) 279, 299, 626, 1197, 1496
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 5 cut(s) 227, 532, 695, 805, 1360
Tru1I TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
Tru9I TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
TscAI CASTG 3 cut(s) 467, 562, 1531
TseFI GTSAC 3 cut(s) 154, 835, 1429
Tsp45I GTSAC 3 cut(s) 154, 835, 1429
TspDTI ATGAA 7 cut(s) 281, 292, 969, 1233, 1347, 1413, 1524
TspRI CASTG 3 cut(s) 467, 562, 1531
VpaK11BI GGWCC 2 cut(s) 580, 812
XapI RAATTY 2 cut(s) 299, 626
XceI RCATGY 2 cut(s) 155, 494
XmiI GTMKAC 1 cut(s) 725
XspI CTAG 6 cut(s) 224, 795, 818, 1181, 1274, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.