FvH4_1g26190

Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
18044450 .. 18046958
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26190.t2

Sequence Viewer

Length: 1548 bp
ATGGATATAGATACAGGGATGTTTACGGTTCCTCAAACCGTTGGCAGTGTACTGTGTTGCAAATGTGGTATTCCCATGGCACCGAATGCTGCCAATATGTGTGTCAAGTGTTTGCGCTCTGAAGTCGACATTACTGAAGGTTTGCAGAAGCATGTGACCATTGTGCATTGCCCTGAATGTGATACCTGGTTGCAGCCTCCAAGAACCTGGATCAAAGCCCAAGTGGAATCAAAGGAGCTGCTAACGTTCTGTGTGAAGAGGCTGAAGAACTTGAATAAAATTAGGTTGGTTCATGCCGAGTTCATTTGGACTGAACCTCACTCCAAGAGGATCAAGGTTAAGTTGGTAGTTCAGAAGGAGGTTCTTAATGGAGCAATACTTGAGCAATCGTATACTGTTGAGTATGTCCAGCAAGAACATATGTGCGAGTCTTGTGCTAGAGTCCAGGCCAACCCTGACCAGTGGGTTGCAGCTGTACAGCTCCGCCAGCATGTTTCTCATAGACGCACATTCTTCTATCTGGAGCAGCTGATTCTGAAGCACGGTGCTGCTGCCAGTGCCATAAAGATTACACAGATGGACCAAGGTATCGATTTCTTTTTCTCAAACCGGAGTCATGGTGTGAAATTTGTGGAGTTTGTGGGTAAAGTTTCTCCAGTAAGGAGTCGTAATGACAAACAGCTTGTTTCCCAAGATTCTAAAAGTAATACTTATCATTACAAGTATACATTCTCAGTGGAAATCGCCCCCATTTGCCGTGAGGATTTGATCTGTCTGCCTCCGAAGGTTAGATCCAGTTTTGGAAATCTTGGTCCTATAGTGATTTGCACTAAAGTGACAAACAGCATTGCTTTGCTTGATCCTTTGACCTTGAGGCATTGTTTTCTGGATGCTGATCAATATTGGAGGTCAACCTTTAAGTCTCTACACACGAGCCGGGAGTTAGTGGAGTATATAGTGCTTGATGTAGAGATGGTTTCATCTGAAGTTAATGTTGGCGGCACAAGGTATGCTTTAGCTGATGCACAAGTTGCCCGTGTGTCCGATTTTGGGAAGAATGATACTATTTTCAACATAAAAACACATTTAGGCCATCTTTTAAACCCTGGGGATTATGCTCTTGGTTATGACTTATATGGGGCAAACAGTAATGATGAGGAACTAGACAAGTACAAGGGTCTAGTTATTCCAGATGTAATTTTGATAAAGAAGAGTTACGAAGAAAAGCGCCTGAAGAAGCGTTCCAAGCCTCGTGCATGGAAGCTCAAATCCCTTCCCATGGAAGTTGATGCTAAAGGTAGAGGTGTGCAAGAAAAGGAGGCCTCAGAGTATGAACAGTTTTTGAAAGATCTGGAAGAGAATCCTGATTTGGTTTTCGGTGTTAATATATACCATAATAAAGAATACCAGCCATCAGAGATGGCATCTGAGACTGATGGGGAAGATGCACCACCTACTGTGCCCTTAGATCAGTTGCTCGACGACATGGATAACCTCCAACTAAGAGAGGATGAAGATGATGAGGACAGTGGCAGCATGAGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

516

Amino Acids

58.63

Weight (kDa)

5.82

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NMD3 PF04981 19 - 248 1.3e-75 NMD3 family
NMD_SH3 PF21193 251 - 295 4.1e-17 NMD3 SH3 domain
OB_NMD3 PF21192 315 - 404 1.4e-31 NMD3 OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 3 cut(s) 126, 392, 725
AciI CCGC 2 cut(s) 484, 999
AclI AACGTT 1 cut(s) 245
AclWI GGATC 4 cut(s) 218, 338, 786, 854
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 6 cut(s) 141, 156, 284, 557, 1005, 1253
AfaI GTAC 3 cut(s) 51, 477, 1172
AfiI CCNNNNNNNGG 2 cut(s) 1050, 1279
AgsI TTSAA 3 cut(s) 274, 1072, 1345
AjnI CCWGG 4 cut(s) 185, 206, 444, 1105
AjuI GAANNNNNNNTTGG 4 cut(s) 978, 1010, 1352, 1384
AleI CACNNNNGTG 1 cut(s) 833
AluBI AGCT 7 cut(s) 238, 473, 481, 529, 682, 1019, 1264
AluI AGCT 7 cut(s) 238, 473, 481, 529, 682, 1019, 1264
Alw26I GTCTC 2 cut(s) 927, 1424
AlwI GGATC 4 cut(s) 218, 338, 786, 854
AoxI GGCC 3 cut(s) 447, 1090, 1320
ApeKI GCWGC 8 cut(s) 89, 193, 238, 470, 526, 548, 551, 1533
ApoI RAATTY 1 cut(s) 626
AspLEI GCGC 2 cut(s) 117, 1230
AspS9I GGNCC 2 cut(s) 580, 812
AsuC2I CCSGG 1 cut(s) 938
AvaII GGWCC 2 cut(s) 580, 812
BaeGI GKGCMC 1 cut(s) 1464
BaeI ACNNNNGTAYC 2 cut(s) 571, 604
BanI GGYRCC 1 cut(s) 79
BauI CACGAG 2 cut(s) 931, 1251
BbvI GCAGC 7 cut(s) 76, 205, 225, 482, 535, 538, 538
BccI CCATC 6 cut(s) 571, 967, 1101, 1414, 1420, 1430
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 4 cut(s) 187, 208, 446, 1107
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 2 cut(s) 927, 1424
BfaI CTAG 3 cut(s) 438, 1163, 1181
BfmI CTRYAG 1 cut(s) 816
BfoI RGCGCY 1 cut(s) 1231
BglII AGATCT 1 cut(s) 1348
BisI GCNGC 9 cut(s) 90, 194, 239, 471, 527, 549, 552, 1000, 1534
BlsI GCNGC 9 cut(s) 91, 195, 240, 472, 528, 550, 553, 1001, 1535
Bme1390I CCNGG 5 cut(s) 187, 208, 446, 938, 1107
Bme18I GGWCC 2 cut(s) 580, 812
BmgT120I GGNCC 2 cut(s) 580, 812
BmiI GGNNCC 2 cut(s) 30, 81
BmrFI CCNGG 5 cut(s) 187, 208, 446, 938, 1107
BmsI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
BpmI CTGGAG 2 cut(s) 542, 639
BpuEI CTTGAG 2 cut(s) 401, 892
BpuMI CCSGG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 5 cut(s) 75, 583, 1105, 1106, 1278
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 1050, 1279
Bse1I ACTGG 4 cut(s) 460, 555, 656, 795
Bse3DI GCAATG 2 cut(s) 166, 846
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 4 cut(s) 187, 208, 446, 1107
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 5 cut(s) 75, 583, 1105, 1106, 1278
BseGI GGATG 3 cut(s) 24, 895, 1516
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 2 cut(s) 1050, 1279
BseMI GCAATG 2 cut(s) 166, 846
BseMII CTCAG 3 cut(s) 747, 1338, 1419
BseNI ACTGG 4 cut(s) 460, 555, 656, 795
BseSI GKGCMC 1 cut(s) 1464
BseXI GCAGC 7 cut(s) 76, 205, 225, 482, 535, 538, 538
BshFI GGCC 3 cut(s) 449, 1092, 1322
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 591
BsiSI CCGG 2 cut(s) 610, 937
BslI CCNNNNNNNGG 2 cut(s) 1050, 1279
BsmAI GTCTC 2 cut(s) 927, 1424
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 3 cut(s) 449, 1092, 1322
Bsp1286I GDGCHC 1 cut(s) 1464
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
Bsp19I CCATGG 2 cut(s) 75, 1278
BspACI CCGC 2 cut(s) 484, 999
BspANI GGCC 3 cut(s) 449, 1092, 1322
BspCNI CTCAG 3 cut(s) 746, 1337, 1420
BspDI ATCGAT 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 30, 81
BspPI GGATC 4 cut(s) 218, 338, 786, 854
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 2 cut(s) 166, 846
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 4 cut(s) 460, 555, 656, 795
BssECI CCNNGG 5 cut(s) 75, 583, 1105, 1106, 1278
BssMI GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
BssNAI GTATAC 2 cut(s) 393, 726
BssSI CACGAG 2 cut(s) 931, 1251
BssT1I CCWWGG 3 cut(s) 75, 583, 1278
Bst1107I GTATAC 2 cut(s) 393, 726
Bst2BI CACGAG 2 cut(s) 931, 1251
Bst2UI CCWGG 4 cut(s) 187, 208, 446, 1107
Bst4CI ACNGT 9 cut(s) 28, 40, 54, 397, 545, 1148, 1338, 1459, 1529
Bst6I CTCTTC 3 cut(s) 251, 1205, 1350
BstAPI GCANNNNNTGC 2 cut(s) 86, 1031
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 5 cut(s) 733, 1324, 1428, 1465, 1502
BstDSI CCRYGG 2 cut(s) 75, 1278
BstF5I GGATG 3 cut(s) 24, 895, 1516
BstH2I RGCGCY 1 cut(s) 1231
BstHHI GCGC 2 cut(s) 117, 1230
BstKTI GATC 8 cut(s) 213, 333, 771, 794, 862, 898, 1351, 1471
BstMAI GTCTC 2 cut(s) 927, 1424
BstMBI GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
BstMWI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
BstNI CCWGG 4 cut(s) 187, 208, 446, 1107
BstNSI RCATGY 2 cut(s) 155, 494
BstSCI CCNGG 5 cut(s) 185, 206, 444, 936, 1105
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 1464
BstV1I GCAGC 7 cut(s) 76, 205, 225, 482, 535, 538, 538
BstX2I RGATCY 2 cut(s) 791, 1348
BstXI CCANNNNNNTGG 1 cut(s) 207
BstYI RGATCY 2 cut(s) 791, 1348
BstZ17I GTATAC 2 cut(s) 393, 726
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 3 cut(s) 449, 1092, 1322
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 2 cut(s) 75, 1278
BtsCI GGATG 3 cut(s) 24, 895, 1516
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 5 cut(s) 52, 467, 562, 741, 1534
Cac8I GCNNGC 1 cut(s) 488
CfoI GCGC 2 cut(s) 117, 1230
Cfr13I GGNCC 2 cut(s) 580, 812
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 1 cut(s) 513
CsiI ACCWGGT 1 cut(s) 185
Csp6I GTAC 3 cut(s) 50, 476, 1171
CviAII CATG 9 cut(s) 76, 152, 293, 491, 617, 1257, 1279, 1486, 1537
CviQI GTAC 3 cut(s) 50, 476, 1171
DdeI CTNAG 5 cut(s) 733, 1324, 1428, 1465, 1502
DpnI GATC 8 cut(s) 212, 332, 770, 793, 861, 897, 1350, 1470
DpnII GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
DraI TTTAAA 1 cut(s) 1101
Eam1104I CTCTTC 3 cut(s) 251, 1205, 1350
EarI CTCTTC 3 cut(s) 251, 1205, 1350
EciI GGCGGA 1 cut(s) 473
Eco130I CCWWGG 3 cut(s) 75, 583, 1278
Eco147I AGGCCT 1 cut(s) 1322
Eco47I GGWCC 2 cut(s) 580, 812
Eco57I CTGAAG 6 cut(s) 141, 156, 284, 557, 1005, 1253
EcoRII CCWGG 4 cut(s) 185, 206, 444, 1105
EcoT14I CCWWGG 3 cut(s) 75, 583, 1278
ErhI CCWWGG 3 cut(s) 75, 583, 1278
FaeI CATG 9 cut(s) 79, 155, 296, 494, 620, 1260, 1282, 1489, 1540
FalI AAGNNNNNCTT 4 cut(s) 694, 726, 997, 1029
FatI CATG 9 cut(s) 75, 151, 292, 490, 616, 1256, 1278, 1485, 1536
FauNDI CATATG 1 cut(s) 420
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 3 cut(s) 126, 392, 725
Fnu4HI GCNGC 9 cut(s) 90, 194, 239, 471, 527, 549, 552, 1000, 1534
FokI GGATG 3 cut(s) 31, 902, 1523
Fsp4HI GCNGC 9 cut(s) 90, 194, 239, 471, 527, 549, 552, 1000, 1534
FspBI CTAG 3 cut(s) 438, 1163, 1181
GlaI GCGC 2 cut(s) 116, 1229
GluI GCNGC 9 cut(s) 90, 194, 239, 471, 527, 549, 552, 1000, 1534
GsuI CTGGAG 2 cut(s) 542, 639
HaeII RGCGCY 1 cut(s) 1231
HaeIII GGCC 3 cut(s) 449, 1092, 1322
HapII CCGG 2 cut(s) 610, 937
HgaI GACGC 1 cut(s) 513
HhaI GCGC 2 cut(s) 117, 1230
Hin1II CATG 9 cut(s) 79, 155, 296, 494, 620, 1260, 1282, 1489, 1540
Hin6I GCGC 2 cut(s) 115, 1228
HinP1I GCGC 2 cut(s) 115, 1228
HincII GTYRAC 2 cut(s) 127, 912
HindII GTYRAC 2 cut(s) 127, 912
HinfI GANTC 8 cut(s) 227, 428, 441, 532, 613, 664, 695, 1360
HpaII CCGG 2 cut(s) 610, 937
Hpy166II GTNNAC 6 cut(s) 24, 50, 127, 393, 726, 912
Hpy188I TCNGA 9 cut(s) 121, 354, 537, 783, 985, 1045, 1327, 1417, 1429
Hpy188III TCNNGA 5 cut(s) 521, 887, 1190, 1352, 1364
Hpy8I GTNNAC 6 cut(s) 24, 50, 127, 393, 726, 912
Hpy99I CGWCG 1 cut(s) 1484
HpyAV CCTTC 4 cut(s) 131, 349, 778, 1283
HpyCH4III ACNGT 9 cut(s) 28, 40, 54, 397, 545, 1148, 1338, 1459, 1529
HpyCH4IV ACGT 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
HpyF3I CTNAG 5 cut(s) 733, 1324, 1428, 1465, 1502
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 9 cut(s) 79, 155, 296, 494, 620, 1260, 1282, 1489, 1540
HspAI GCGC 2 cut(s) 115, 1228
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
LmnI GCTCC 4 cut(s) 235, 371, 486, 523
Lsp1109I GCAGC 7 cut(s) 76, 205, 225, 482, 535, 538, 538
LweI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
MabI ACCWGGT 1 cut(s) 185
MaeI CTAG 3 cut(s) 438, 1163, 1181
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 154, 835, 1214
MalI GATC 8 cut(s) 212, 332, 770, 793, 861, 897, 1350, 1470
MboI GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
MflI RGATCY 2 cut(s) 791, 1348
MhlI GDGCHC 1 cut(s) 1464
MluCI AATT 3 cut(s) 279, 626, 1197
MlyI GAGTC 4 cut(s) 437, 450, 622, 673
MmeI TCCRAC 1 cut(s) 1522
MseI TTAA 6 cut(s) 339, 366, 918, 990, 1100, 1383
MslI CAYNNNNRTG 1 cut(s) 833
MspA1I CMGCKG 2 cut(s) 473, 529
MspI CCGG 2 cut(s) 610, 937
MspR9I CCNGG 5 cut(s) 187, 208, 446, 938, 1107
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 4 cut(s) 187, 208, 446, 1107
MwoI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
NciI CCSGG 1 cut(s) 938
NcoI CCATGG 2 cut(s) 75, 1278
NdeI CATATG 1 cut(s) 420
NdeII GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
NlaIII CATG 9 cut(s) 79, 155, 296, 494, 620, 1260, 1282, 1489, 1540
NlaIV GGNNCC 2 cut(s) 30, 81
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 154, 835
NspI RCATGY 2 cut(s) 155, 494
OliI CACNNNNGTG 1 cut(s) 833
PasI CCCWGGG 1 cut(s) 1106
PceI AGGCCT 1 cut(s) 1322
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 4 cut(s) 227, 532, 695, 1360
PkrI GCNGC 9 cut(s) 91, 195, 240, 472, 528, 550, 553, 1001, 1535
PleI GAGTC 4 cut(s) 436, 449, 621, 672
PpsI GAGTC 4 cut(s) 436, 449, 621, 672
Psp1406I AACGTT 1 cut(s) 245
Psp6I CCWGG 4 cut(s) 185, 206, 444, 1105
PspGI CCWGG 4 cut(s) 185, 206, 444, 1105
PspN4I GGNNCC 2 cut(s) 30, 81
PspPI GGNCC 2 cut(s) 580, 812
PsuI RGATCY 2 cut(s) 791, 1348
PvuII CAGCTG 2 cut(s) 473, 529
RsaI GTAC 3 cut(s) 51, 477, 1172
RsaNI GTAC 3 cut(s) 50, 476, 1171
RseI CAYNNNNRTG 1 cut(s) 833
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 6 cut(s) 339, 366, 918, 990, 1100, 1383
SatI GCNGC 9 cut(s) 90, 194, 239, 471, 527, 549, 552, 1000, 1534
Sau3AI GATC 8 cut(s) 210, 330, 768, 791, 859, 895, 1348, 1468
Sau96I GGNCC 2 cut(s) 580, 812
SchI GAGTC 4 cut(s) 437, 450, 622, 673
ScrFI CCNGG 5 cut(s) 187, 208, 446, 938, 1107
SduI GDGCHC 1 cut(s) 1464
SexAI ACCWGGT 1 cut(s) 185
SfaNI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
SfcI CTRYAG 1 cut(s) 816
SinI GGWCC 2 cut(s) 580, 812
SmiMI CAYNNNNRTG 1 cut(s) 833
SmlI CTYRAG 2 cut(s) 380, 871
SmoI CTYRAG 2 cut(s) 380, 871
Sse9I AATT 3 cut(s) 279, 626, 1197
SseBI AGGCCT 1 cut(s) 1322
SsiI CCGC 2 cut(s) 484, 999
SspI AATATT 1 cut(s) 902
SspMI CTAG 3 cut(s) 438, 1163, 1181
StuI AGGCCT 1 cut(s) 1322
StyD4I CCNGG 5 cut(s) 185, 206, 444, 936, 1105
StyI CCWWGG 3 cut(s) 75, 583, 1278
TaaI ACNGT 9 cut(s) 28, 40, 54, 397, 545, 1148, 1338, 1459, 1529
TaiI ACGT 1 cut(s) 248
TaqI TCGA 3 cut(s) 126, 591, 1479
TasI AATT 3 cut(s) 279, 626, 1197
TatI WGTACW 3 cut(s) 49, 475, 1170
TauI GCSGC 1 cut(s) 1002
TfiI GAWTC 4 cut(s) 227, 532, 695, 1360
Tru1I TTAA 6 cut(s) 339, 366, 918, 990, 1100, 1383
Tru9I TTAA 6 cut(s) 339, 366, 918, 990, 1100, 1383
TscAI CASTG 5 cut(s) 52, 467, 562, 741, 1534
TseFI GTSAC 2 cut(s) 154, 835
TseI GCWGC 8 cut(s) 89, 193, 238, 470, 526, 548, 551, 1533
Tsp45I GTSAC 2 cut(s) 154, 835
TspDTI ATGAA 5 cut(s) 281, 292, 969, 1347, 1527
TspRI CASTG 5 cut(s) 52, 467, 562, 741, 1534
VpaK11BI GGWCC 2 cut(s) 580, 812
XapI RAATTY 1 cut(s) 626
XceI RCATGY 2 cut(s) 155, 494
XmiI GTMKAC 3 cut(s) 126, 392, 725
XspI CTAG 3 cut(s) 438, 1163, 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.