Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001259.1

Orthogroup ID

OG0004365

Physical Location & Seq

Genomic Coordinates Reverse (-)

63750 .. 65285

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001259.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

atggctgaagaagcaggtggtatgttcgtggttcagcaaactgttggcagcgtgctgtgttgcaagtgtggtgtctccatgacacccaacgctgccaatatgtgcgtcaagtgtttgcgctccgaggttgatattacccaaggtttgcagaagcaggtgaccattctccattgccccgagtgtgagagctacttgcagcctccaagaacatggatcaaagcccaattagagtccaaggagctgctgtccttctgtattaggagagtgaagaacttgaacaaagttaagttggttcatgccgaattcatttggaccgagcctcactccaagaggatcaaggtgaaactgaaagttcagaaagaggttttgaatggagcactacttgaacagtcttttgttgtggagtatgttcagcaagaacatatgtgtgaaccttgttccagggcccaggctaaccctgaccagtgggttgcatctgtgcaactccgccagcatgtttctcacaaacgcacctttttctttctcgagcagctgattctcaagcatggtgctgctgccagtgccataaggattaaggagacagataaagggatcgacttcttttttccaagccggagtcacggcttgaaattcgtggaatttgtgggtaaagttgcaccaataaagagtcgccatgacaaacagcttgtttcacatgatcagaaaagcaataattttaattataggtatacattctcagttgaaatatgccccatttgccgtgaggatttgatttgtctgcctcccaaggtcaaatctagtttgggtaatcttggtcctcttgtgatctgcaccaaagtaaccaacagtattgcgttgcttgatcctttcaccttgaggcatggtttcttggatactgatcagtattggagatcatcctttaagtctcttcatacgagcagggagctagtggagtatatagtgctggatgtggaggttgtttcgcctgaagttactattggtggctcaaggtatgctttagctgatgcacaagttgctcgcctgtctgactttgggaagaatgacactattttcaacataaaaacacatctaggccatcttttaagtcctggggattatgctcttggttatgacttatatggggctaatagtaatgatgacgaactggagaagtacaagggtctggtcattccagaagcaattttggtaaagaagagctatgaagaaaagcatcagaagaagcgtgggaagcctcgctcgtggaagcttaagtccctcaacatggaagttgacgataaaggtagaggtgagcaagaaaaggtggactcagagtatgaacagttcttggatgatctggaggagaaccctgaaatgaggttcaatgtatcactgtaccgcaatgaagaataccaaaagccatcagagactgcatcagtgactgatggggaagatctaccttctgtaccacttgaggagttgcttggtgaccttggactaggtgaggccgaagttggggacagcagcatgaggaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

NMD3

Protein Analysis

511

Amino Acids

57.92

Weight (kDa)

6.34

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03820
fragaria_vesca	FvH4_1g26190 FvH4_1g26190 FvH4_4g00390 FvH4_4g00390
prunus_persica	Prupe.4G217800_v2.0.a1 Prupe.4G217800_v2.0.a1 Prupe.4G273200_v2.0.a1
pyrus_communis	pycom04g00430
rosa_chinensis	RchiOBHm_Chr3g0485681 RchiOBHm_Chr3g0485701 RchiOBHm_Chr4g0385341
rosa_laevigata	RLG00000010236 RLG00000023132
rosa_multiflora	Rmu_sc0001259.1_g000008 Rmu_sc0003005.1_g000028
rosa_roxburghii	Rroxscaffold_5G00333270 Rroxscaffold_6G00396510 Rroxscaffold_6G00396820 Rroxscaffold_6G00396840
rosa_rugosa	Rorug03G0220700 Rorug03G0300500
rosa_samantha	Rh3AG269900 Rh3BG305700 Rh3CG303800 Rh3DG300100 Rh4AG004200 Rh4BG003600 Rh4CG005300 Rh4DG003800
rosa_wichuraiana	Rw3G024040 Rw4G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	5, 145
Acc36I	ACCTGC	2 cut(s)	5, 145
AccI	GTMKAC	1 cut(s)	728
AciI	CCGC	2 cut(s)	487, 1396
AclWI	GGATC	4 cut(s)	221, 341, 599, 857
AcsI	RAATTY	3 cut(s)	302, 629, 638
AcuI	CTGAAG	2 cut(s)	27, 1008
AfaI	GTAC	3 cut(s)	1175, 1394, 1464
AfiI	CCNNNNNNNGG	2 cut(s)	1282, 1512
AflII	CTTAAG	1 cut(s)	1268
AgsI	TTSAA	7 cut(s)	277, 370, 386, 628, 743, 1075, 1381
AjnI	CCWGG	3 cut(s)	440, 447, 1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	8 cut(s)	189, 241, 532, 685, 946, 1022, 1218, 1267
AluI	AGCT	8 cut(s)	189, 241, 532, 685, 946, 1022, 1218, 1267
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	4 cut(s)	79, 572, 930, 1418
AlwI	GGATC	4 cut(s)	221, 341, 599, 857
AlwNI	CAGNNNCTG	2 cut(s)	1427, 1439
Ama87I	CYCGRG	2 cut(s)	176, 524
AoxI	GGCC	3 cut(s)	444, 1093, 1503
ApaI	GGGCCC	1 cut(s)	448
ApeKI	GCWGC	8 cut(s)	48, 92, 196, 241, 529, 551, 554, 1521
ApoI	RAATTY	3 cut(s)	302, 629, 638
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	4 cut(s)	312, 444, 445, 815
AsuHPI	GGTGA	6 cut(s)	169, 352, 862, 1319, 1496, 1511
AvaI	CYCGRG	2 cut(s)	176, 524
AvaII	GGWCC	2 cut(s)	312, 815
BaeGI	GKGCMC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	1258
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	7 cut(s)	60, 79, 208, 228, 538, 541, 541
BccI	CCATC	3 cut(s)	1104, 1426, 1436
BceAI	ACGGC	2 cut(s)	637, 744
BciT130I	CCWGG	3 cut(s)	442, 449, 1110
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	2 cut(s)	697, 898
BcoDI	GTCTC	4 cut(s)	79, 572, 930, 1418
BfaI	CTAG	4 cut(s)	798, 947, 1091, 1496
BfrI	CTTAAG	1 cut(s)	1268
BfuAI	ACCTGC	2 cut(s)	5, 145
BfuI	GTATCC	1 cut(s)	886
BglII	AGATCT	1 cut(s)	1450
BisI	GCNGC	8 cut(s)	49, 93, 197, 242, 530, 552, 555, 1522
BlsI	GCNGC	8 cut(s)	50, 94, 198, 243, 531, 553, 556, 1523
Bme1390I	CCNGG	3 cut(s)	442, 449, 1110
Bme18I	GGWCC	2 cut(s)	312, 815
BmeT110I	CYCGRG	2 cut(s)	176, 524
BmgT120I	GGNCC	4 cut(s)	312, 444, 445, 815
BmiI	GGNNCC	1 cut(s)	446
BmrFI	CCNGG	3 cut(s)	442, 449, 1110
BmsI	GCATC	4 cut(s)	482, 1015, 1240, 1439
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	2 cut(s)	1187, 1376
BpuEI	CTTGAG	4 cut(s)	524, 895, 991, 1490
BsaBI	GATNNNNATC	1 cut(s)	897
BsaJI	CCNNGG	8 cut(s)	123, 139, 234, 441, 447, 786, 1109, 1489
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	1282, 1512
Bse1I	ACTGG	3 cut(s)	463, 558, 1170
Bse3DI	GCAATG	2 cut(s)	169, 1405
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	3 cut(s)	442, 449, 1110
BseDI	CCNNGG	8 cut(s)	123, 139, 234, 441, 447, 786, 1109, 1489
BseGI	GGATG	3 cut(s)	914, 973, 1354
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	2 cut(s)	1282, 1512
BseMI	GCAATG	2 cut(s)	169, 1405
BseMII	CTCAG	2 cut(s)	750, 1341
BseNI	ACTGG	3 cut(s)	463, 558, 1170
BseRI	GAGGAG	2 cut(s)	1373, 1487
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	7 cut(s)	60, 79, 208, 228, 538, 541, 541
BsgI	GTGCAG	1 cut(s)	814
BshFI	GGCC	3 cut(s)	446, 1095, 1505
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	2 cut(s)	176, 524
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	2 cut(s)	1258, 1529
BslI	CCNNNNNNNGG	2 cut(s)	1282, 1512
BsmAI	GTCTC	4 cut(s)	79, 572, 930, 1418
BsmFI	GGGAC	2 cut(s)	1258, 1529
BsnI	GGCC	3 cut(s)	446, 1095, 1505
BsoBI	CYCGRG	2 cut(s)	176, 524
Bsp120I	GGGCCC	1 cut(s)	444
Bsp1286I	GDGCHC	2 cut(s)	379, 448
BspACI	CCGC	2 cut(s)	487, 1396
BspANI	GGCC	3 cut(s)	446, 1095, 1505
BspCNI	CTCAG	2 cut(s)	749, 1340
BspLI	GGNNCC	1 cut(s)	446
BspMI	ACCTGC	2 cut(s)	5, 145
BspPI	GGATC	4 cut(s)	221, 341, 599, 857
BspQI	GCTCTTC	1 cut(s)	1208
BspTI	CTTAAG	1 cut(s)	1268
BsrDI	GCAATG	2 cut(s)	169, 1405
BsrI	ACTGG	3 cut(s)	463, 558, 1170
BssECI	CCNNGG	8 cut(s)	123, 139, 234, 441, 447, 786, 1109, 1489
BssNAI	GTATAC	1 cut(s)	729
BssSI	CACGAG	1 cut(s)	1258
BssT1I	CCWWGG	4 cut(s)	139, 234, 786, 1489
Bst1107I	GTATAC	1 cut(s)	729
Bst2BI	CACGAG	1 cut(s)	1258
Bst2UI	CCWGG	3 cut(s)	442, 449, 1110
Bst4CI	ACNGT	5 cut(s)	43, 390, 848, 1341, 1392
Bst6I	CTCTTC	2 cut(s)	933, 1208
BstAFI	CTTAAG	1 cut(s)	1268
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstC8I	GCNNGC	3 cut(s)	53, 491, 1039
BstDEI	CTNAG	2 cut(s)	736, 1327
BstEII	GGTNACC	2 cut(s)	157, 1484
BstF5I	GGATG	3 cut(s)	914, 973, 1354
BstHHI	GCGC	1 cut(s)	120
BstMAI	GTCTC	4 cut(s)	79, 572, 930, 1418
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 560, 756, 1034, 1249
BstNI	CCWGG	3 cut(s)	442, 449, 1110
BstNSI	RCATGY	1 cut(s)	497
BstPI	GGTNACC	2 cut(s)	157, 1484
BstSCI	CCNGG	3 cut(s)	440, 447, 1108
BstSLI	GKGCMC	1 cut(s)	448
BstV1I	GCAGC	7 cut(s)	60, 79, 208, 228, 538, 541, 541
BstX2I	RGATCY	1 cut(s)	1450
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	1450
BstZ17I	GTATAC	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	3 cut(s)	446, 1095, 1505
BtsCI	GGATG	3 cut(s)	914, 973, 1354
BtsIMutI	CAGTG	4 cut(s)	470, 565, 1388, 1440
BveI	ACCTGC	2 cut(s)	5, 145
Cac8I	GCNNGC	3 cut(s)	53, 491, 1039
CaiI	CAGNNNCTG	2 cut(s)	1427, 1439
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	4 cut(s)	312, 444, 445, 815
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	1174, 1393, 1463
CviQI	GTAC	3 cut(s)	1174, 1393, 1463
DdeI	CTNAG	2 cut(s)	736, 1327
Eam1104I	CTCTTC	2 cut(s)	933, 1208
EarI	CTCTTC	2 cut(s)	933, 1208
EciI	GGCGGA	1 cut(s)	476
Eco130I	CCWWGG	4 cut(s)	139, 234, 786, 1489
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	312, 815
Eco57I	CTGAAG	2 cut(s)	27, 1008
Eco88I	CYCGRG	2 cut(s)	176, 524
Eco91I	GGTNACC	2 cut(s)	157, 1484
EcoO109I	RGGNCCY	1 cut(s)	444
EcoO65I	GGTNACC	2 cut(s)	157, 1484
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	3 cut(s)	440, 447, 1108
EcoT14I	CCWWGG	4 cut(s)	139, 234, 786, 1489
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	4 cut(s)	139, 234, 786, 1489
FalI	AAGNNNNNCTT	2 cut(s)	1000, 1032
FaqI	GGGAC	2 cut(s)	1258, 1529
FauNDI	CATATG	1 cut(s)	423
FbaI	TGATCA	2 cut(s)	697, 898
FblI	GTMKAC	1 cut(s)	728
Fnu4HI	GCNGC	8 cut(s)	49, 93, 197, 242, 530, 552, 555, 1522
FokI	GGATG	3 cut(s)	901, 980, 1361
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	8 cut(s)	49, 93, 197, 242, 530, 552, 555, 1522
FspBI	CTAG	4 cut(s)	798, 947, 1091, 1496
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	8 cut(s)	49, 93, 197, 242, 530, 552, 555, 1522
GsuI	CTGGAG	2 cut(s)	1187, 1376
HaeIII	GGCC	3 cut(s)	446, 1095, 1505
HapII	CCGG	1 cut(s)	613
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	1291
HindII	GTYRAC	1 cut(s)	1291
HindIII	AAGCTT	1 cut(s)	1265
HinfI	GANTC	5 cut(s)	230, 535, 616, 667, 1325
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	6 cut(s)	169, 352, 862, 1319, 1496, 1511
Hpy166II	GTNNAC	4 cut(s)	431, 729, 1291, 1324
Hpy188I	TCNGA	7 cut(s)	124, 357, 702, 1048, 1236, 1330, 1423
Hpy188III	TCNNGA	3 cut(s)	524, 1193, 1355
Hpy8I	GTNNAC	4 cut(s)	431, 729, 1291, 1324
HpyAV	CCTTC	2 cut(s)	259, 1467
HpyCH4III	ACNGT	5 cut(s)	43, 390, 848, 1341, 1392
HpyCH4V	TGCA	9 cut(s)	63, 148, 196, 473, 481, 656, 831, 1028, 1430
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 560, 756, 1034, 1249
HpyF3I	CTNAG	2 cut(s)	736, 1327
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	2 cut(s)	697, 898
LguI	GCTCTTC	1 cut(s)	1208
LmnI	GCTCC	4 cut(s)	125, 238, 374, 943
Lsp1109I	GCAGC	7 cut(s)	60, 79, 208, 228, 538, 541, 541
LweI	GCATC	4 cut(s)	482, 1015, 1240, 1439
MaeI	CTAG	4 cut(s)	798, 947, 1091, 1496
MaeIII	GTNAC	6 cut(s)	157, 617, 838, 991, 1435, 1484
MboII	GAAGA	9 cut(s)	20, 280, 920, 1069, 1225, 1235, 1249, 1415, 1460
MflI	RGATCY	1 cut(s)	1450
MhlI	GDGCHC	2 cut(s)	379, 448
MluCI	AATT	7 cut(s)	224, 302, 629, 638, 712, 718, 1200
MlyI	GAGTC	4 cut(s)	239, 625, 676, 1319
MseI	TTAA	6 cut(s)	285, 573, 717, 921, 1103, 1269
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	532
MspCI	CTTAAG	1 cut(s)	1268
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	3 cut(s)	442, 449, 1110
MvaI	CCWGG	3 cut(s)	442, 449, 1110
MwoI	GCNNNNNNNGC	5 cut(s)	11, 560, 756, 1034, 1249
NdeI	CATATG	1 cut(s)	423
NlaIV	GGNNCC	1 cut(s)	446
NmuCI	GTSAC	4 cut(s)	157, 617, 1435, 1484
NspI	RCATGY	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	524
PaqCI	CACCTGC	2 cut(s)	5, 145
PciSI	GCTCTTC	1 cut(s)	1208
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	8 cut(s)	50, 94, 198, 243, 531, 553, 556, 1523
PleI	GAGTC	4 cut(s)	238, 624, 675, 1319
PpsI	GAGTC	4 cut(s)	238, 624, 675, 1319
Psp6I	CCWGG	3 cut(s)	440, 447, 1108
PspEI	GGTNACC	2 cut(s)	157, 1484
PspGI	CCWGG	3 cut(s)	440, 447, 1108
PspN4I	GGNNCC	1 cut(s)	446
PspOMI	GGGCCC	1 cut(s)	444
PspPI	GGNCC	4 cut(s)	312, 444, 445, 815
PsrI	GAACNNNNNNTAC	2 cut(s)	1325, 1357
PstNI	CAGNNNCTG	2 cut(s)	1427, 1439
PsuI	RGATCY	1 cut(s)	1450
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	3 cut(s)	1175, 1394, 1464
RsaNI	GTAC	3 cut(s)	1174, 1393, 1463
RseI	CAYNNNNRTG	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	1208
SaqAI	TTAA	6 cut(s)	285, 573, 717, 921, 1103, 1269
SatI	GCNGC	8 cut(s)	49, 93, 197, 242, 530, 552, 555, 1522
Sau96I	GGNCC	4 cut(s)	312, 444, 445, 815
SchI	GAGTC	4 cut(s)	239, 625, 676, 1319
ScrFI	CCNGG	3 cut(s)	442, 449, 1110
SduI	GDGCHC	2 cut(s)	379, 448
SfaNI	GCATC	4 cut(s)	482, 1015, 1240, 1439
Sfr274I	CTCGAG	1 cut(s)	524
SinI	GGWCC	2 cut(s)	312, 815
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	6 cut(s)	524, 539, 874, 1006, 1268, 1469
SmoI	CTYRAG	6 cut(s)	524, 539, 874, 1006, 1268, 1469
Sse9I	AATT	7 cut(s)	224, 302, 629, 638, 712, 718, 1200
SsiI	CCGC	2 cut(s)	487, 1396
SspMI	CTAG	4 cut(s)	798, 947, 1091, 1496
StyD4I	CCNGG	3 cut(s)	440, 447, 1108
StyI	CCWWGG	4 cut(s)	139, 234, 786, 1489
TaaI	ACNGT	5 cut(s)	43, 390, 848, 1341, 1392
TaqI	TCGA	2 cut(s)	525, 594
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	7 cut(s)	224, 302, 629, 638, 712, 718, 1200
TatI	WGTACW	1 cut(s)	1173
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	6 cut(s)	285, 573, 717, 921, 1103, 1269
Tru9I	TTAA	6 cut(s)	285, 573, 717, 921, 1103, 1269
TscAI	CASTG	4 cut(s)	470, 565, 1395, 1440
TseFI	GTSAC	4 cut(s)	157, 617, 1435, 1484
TseI	GCWGC	8 cut(s)	48, 92, 196, 241, 529, 551, 554, 1521
Tsp45I	GTSAC	4 cut(s)	157, 617, 1435, 1484
TspDTI	ATGAA	6 cut(s)	284, 295, 920, 1236, 1350, 1416
TspRI	CASTG	4 cut(s)	470, 565, 1395, 1440
Vha464I	CTTAAG	1 cut(s)	1268
VpaK11BI	GGWCC	2 cut(s)	312, 815
XapI	RAATTY	3 cut(s)	302, 629, 638
XceI	RCATGY	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	728
XspI	CTAG	4 cut(s)	798, 947, 1091, 1496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.