Rorug03G0300500

Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
31490050 .. 31536064
46015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0300500.1

Sequence Viewer

Length: 3444 bp
ATGGGGATGAAGAGTAAGCTGAAACAGGAACAAGTTACAGATACTAGCAGCCTAGTGGGTTTGGTATTCTCTTGGTCTATTTGGGATGTTCTCAATGAAAATCTTTACAGAAATCAGGTGCAGAGGATCCCCGACACATTTGCGACATTGACGAGTTACAAGAAATCATTCATTCCTTCACTTGTTGAGGAAACTCATGCTGATTTACTATCAAATATGAAGACTCTGTCACATGCACCTACTTGTGAAATTTTGACAATCGTAGATTCAGCTGAACATCCTGGTGACTTGTTTTACAATATAATGTATAAGAGAGATACAGAAACTGATGAGAATCACAAAGGACTGATGTATGAGCCACAGGTTGGAGATATCATTGCCTTGACAAATGTTAGACCAAAATGCATTGATGATTTGAACAGCCCTCCAAGATTCTATCTAATCGCTTATGTTGATCAAGCAAATGATATTGATGAATTTCCTGATGATCTCCAGTTCAAAATACTATCATCGAAGCCCATCAACTATGGAGAATCAGACATGCATAAGAGCAAGAGAGAAACACTTTTTGCTGTCTATCTTATGAACTTGACAACAAATCTCCGTGTATGGAAGGCTTTGAACTCAGAAGAGGGAAATACAAATATCATTAGCAAAGTTCTGCAACCCAAGTCAGATGATGGGGATTCTTGTTCAGTTTGGTTCTCCAAATACAAATGCAATGCTGGCATTTCTGCTATATGGCCTACAATTTTCTCTCAAAATCTAAATGAATCCCAAGAAGCTGCAGTTTTGAACTGTATCAGTTTGACTCAATGCCATCACCAGAATTCTGTAAAATTAATATGGGGTCCTCCTGGTACTGGCAAGACAAAGACAATGAGTGTGACACTCTTTGCTCTCTTTCAGTTAAAGTGCAGAACTCTCACATGCGCTCCCACCAATATTGCGGTGCTAGAAGTAGCAGCAAGACTCCGGAGATTGGTTAACCAATCACTCGAGTATGGCAGGTATGGACTTGGAGATATAGTTCTCTTTGGTAACAAGAAGCGAATGAAGATTGACAACAATAATGATCTTCGTGACATGTTTCTTGATCATCGTGTTAAAATCCTCATAAAGTGTTTGGTCCCTTTATCTGGGTGGAGACATTTGTTAGAATCAATGATACATTTACTTGATGATCCTGAGGAACAATATTCTTTGTATTTGGAACAGAGAGCTGAAAAGCAGAAACAGAATGCACAAAAAAATGAGGAGGATAATCGAAAACGTAATGGAGATGAAGATTATCCGTTCACATTTGAGGAGTTTATGAAGAATGAATTTGATTCAATTGGTCAGGAGCTGAAGAAATGTATGGTAAATTTGTACACCCACTTACCAACTTCTTGTATTTCACTCGAAGTGGTGAAGGACATGGTCAGAGCTTTGGGTTTGCTCAACTCTATTGAATCTTCATTGCATACTATTGGTGTTGCTAATGAAGGGTTGAAGTTAATCAAAGATTTCAAAGTTCCAGGAAGCGTTGTTGGTTGCCTTATGCAGTTGAGAACAGAGTGTACAAACACACTAAAGTCGCTTCCAATGGAATTCTCTGTTCCTATTAACAAATATGCATTAGAGAACTTCTGCCTAGAAAATGCTTGCTTAATATTCTGTACTGCATCAACTTCCTCCAAATTGCATGTTGTAAAAGGGACAAGACCACTGCAGTTGTTGGTCATTGATGAAGCTGCTCAGCTTAAAGAATGTGAATCAGCAATTCCTTTACAACTATCTGGTCTCCGCCATGCTATCCTTGTAGGAGATGAGAGGCAACTCCCTGCCATGGTTGAAAGCAAGATTGCAGCAAGTGCTGATTTTGGAAGAAGTTTGTTTGGAAGGCTGGCAAAGCTGGGACACAAGAAGCACCTACTCAATGTCCAGTACAGGATGCATCCTTCCATCAGTTTATTTCCGAAAAGGGAGTTCTACGACAACCAGATAGTAGATGGTCCAAATGTCAAAGAAAGAAGCTATGAGAGGTGCTTCCTCATGGGAAAAATGTACCAATCCTTTTCCTTCATAAATGTAGCCAATGGAAAAGAAGAATTTGATCACAGATTTAGTCAGAAAAATATGGTGGAGGTTGCTGTAGTCTCTGGGATAGTAGCAAGCCTTTATAAAGAATTTATTGGAACAAAGAAGAAAGTTAGAATTGGGGTCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAGAGATACTCAGAAAATATACTGAAACTTCTGATACTGGATTCTCCGTAAGTGTCCGATCTGTTGATGGGTTCCAAGGTGGTGAAGAAGATGTGATAATTATATCTACTGTTCGATGTAATGGGAATGGGTCAGTTGGTTTCTTGTCGAACCGGCAAAGAGCAAATGTTGCCTTAACACGTGCAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAACTTTGATTGCTAGTGACACTGTTTGGAAGAAGCTAGTCCTTGATGCCAAGAAACGGAACTGTTTTTATAATGCTGATGAAGACAGCAAGTTGACTCAGGCTATTACAGCTGCCCTTCTGGAGCTTGACCAACTTCATACTCTGCTTAATATCGACTCTATGCTGTTCAAAAACGCCATATGGAAGGTTTGCTTCACTCGTGACTTTTTGAACTCCATAACAAAAATTAAAGACACTGTGATTCTTTGGGATGTCCTGGCTTTATTAACCAAGCTTTCGAGTGGATGGCGCCGACCTCTCGAGGATAAAGGAACTTTAGTGCATGATAGGACTTCTGCTCAACTGTTAGAGAAGTATAAAATCAAAGGGAACTTGAATCTCATTTGGACTGTAGATATTCTCAAGGAGAATGCACATTACATCCAAGTTATGAAGTTTTTGGATATTTTGCCATTTTCTCATATACCAGAACTAGCAAAGCGTCTTGACATTGTTTTTGGGAATTTTACAGTGGACAAGATGAACCGCTGCCGTCACAAATGCATTGACAGGGATACTGTTGTTCCAATGAGATGGCCGGTGGTTTTCGGCAATTTCCCTATAGCTGATCATGAGGAGTTCCTTTCAAAACCATTGTCTTCTTTCAGTATAACAACTAATCGAGAAACAGCAACTTCAACATACGGGGAGACAGCGAAAGCAATAAAACCAATTGTCCCTTCGAAAAGCAATGTCAGCCAAAAAGAAAGATTGTTATGGAAAATAAAGGGTGAAGGAGTGAAGGATTTCAGCACTTGCCTTGAAGCTATATTTTTGGAGTTCTTGTCAAAACCATTATCATCACTAATGGTTTTGGGGCTGCTTCTGCTTTTGGGATTGATTTTGGGGCTGCTTCTGCTTTTGGGCTTTCAATATTTGGGATTGATTTTGGGGCTGCTTTTGGGGCTGCTTCTACTTTTGGGCTTACAGTATGGTGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1147

Amino Acids

129.87

Weight (kDa)

8.41

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6469 PF20073 80 - 209 1e-11 Domain of unknown function (DUF6469)
AAA_11 PF13086 255 - 615 1e-31 AAA domain
AAA_12 PF13087 623 - 819 1.1e-56 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2166, 2529
Acc36I ACCTGC 1 cut(s) 999
AccB1I GGYRCC 1 cut(s) 2748
AccB7I CCANNNNNTGG 1 cut(s) 365
AccIII TCCGGA 1 cut(s) 975
AciI CCGC 3 cut(s) 950, 1789, 2986
AclWI GGATC 3 cut(s) 121, 134, 1178
AcoI YGGCCR 1 cut(s) 3035
AcsI RAATTY 9 cut(s) 249, 476, 829, 1325, 1366, 1592, 2093, 2171, 2962
AcuI CTGAAG 1 cut(s) 1370
AcvI CACGTG 1 cut(s) 2423
AcyI GRCGYC 1 cut(s) 2749
AfaI GTAC 6 cut(s) 862, 1373, 1564, 1663, 1931, 2051
AfiI CCNNNNNNNGG 6 cut(s) 365, 863, 982, 1139, 1831, 2514
AflIII ACRYGT 2 cut(s) 1086, 2420
AjnI CCWGG 4 cut(s) 280, 856, 1519, 2715
AjuI GAANNNNNNNTTGG 2 cut(s) 3163, 3195
AloI GAACNNNNNNTCC 2 cut(s) 1014, 1046
Alw26I GTCTC 4 cut(s) 1141, 1790, 2146, 3143
AlwI GGATC 3 cut(s) 121, 134, 1178
AlwNI CAGNNNCTG 2 cut(s) 326, 1348
Ama87I CYCGRG 2 cut(s) 998, 2759
Aor13HI TCCGGA 1 cut(s) 975
AoxI GGCC 2 cut(s) 743, 3035
ApoI RAATTY 9 cut(s) 249, 476, 829, 1325, 1366, 1592, 2093, 2171, 2962
ArsI GACNNNNNNTTYG 4 cut(s) 2939, 2971, 3080, 3112
AseI ATTAAT 1 cut(s) 842
Asp700I GAANNNNTTC 2 cut(s) 167, 3245
AspLEI GCGC 2 cut(s) 935, 2751
AspS9I GGNCC 3 cut(s) 851, 1129, 1997
AsuHPI GGTGA 6 cut(s) 296, 815, 1423, 2205, 2336, 3242
AsuII TTCGAA 1 cut(s) 3182
AvaI CYCGRG 2 cut(s) 998, 2759
AvaII GGWCC 3 cut(s) 851, 1129, 1997
AxyI CCTNAGG 1 cut(s) 1188
BaeI ACNNNNGTAYC 2 cut(s) 3006, 3039
BamHI GGATCC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 2748
BauI CACGAG 1 cut(s) 2658
BbrPI CACGTG 1 cut(s) 2423
BbsI GAAGAC 3 cut(s) 227, 2547, 3090
BccI CCATC 8 cut(s) 527, 674, 828, 1955, 1988, 2303, 2739, 3027
BceAI ACGGC 1 cut(s) 2976
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 4 cut(s) 282, 858, 1521, 2717
BciVI GTATCC 1 cut(s) 3007
BclI TGATCA 4 cut(s) 454, 1096, 2098, 3067
BcoDI GTCTC 4 cut(s) 1141, 1790, 2146, 3143
BfaI CTAG 7 cut(s) 45, 53, 956, 1637, 2472, 2495, 2933
BfmI CTRYAG 5 cut(s) 786, 1712, 2136, 2850, 3060
BfoI RGCGCY 1 cut(s) 2752
BfuAI ACCTGC 1 cut(s) 999
BfuI GTATCC 1 cut(s) 3007
BlpI GCTNAGC 1 cut(s) 1740
Bme1390I CCNGG 4 cut(s) 282, 858, 1521, 2717
Bme18I GGWCC 3 cut(s) 851, 1129, 1997
BmeT110I CYCGRG 2 cut(s) 998, 2759
BmgT120I GGNCC 3 cut(s) 851, 1129, 1997
BmiI GGNNCC 5 cut(s) 128, 852, 1131, 2315, 2750
BmrFI CCNGG 4 cut(s) 282, 858, 1521, 2717
BmsI GCATC 4 cut(s) 1676, 1926, 1948, 2494
BpiI GAAGAC 3 cut(s) 227, 2547, 3090
BpmI CTGGAG 2 cut(s) 476, 2600
Bpu1102I GCTNAGC 1 cut(s) 1740
Bpu14I TTCGAA 1 cut(s) 3182
BpuEI CTTGAG 2 cut(s) 2211, 2846
BsaAI YACGTR 1 cut(s) 2423
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 2749
BsaI GGTCTC 1 cut(s) 1790
BsaJI CCNNGG 2 cut(s) 1830, 2317
BsaWI WCCGGW 1 cut(s) 975
BsaXI ACNNNNNCTCC 6 cut(s) 919, 949, 1014, 1044, 3269, 3299
Bsc4I CCNNNNNNNGG 6 cut(s) 365, 863, 982, 1139, 1831, 2514
Bse118I RCCGGY 2 cut(s) 2394, 3037
Bse1I ACTGG 4 cut(s) 493, 868, 1927, 2284
Bse21I CCTNAGG 1 cut(s) 1188
Bse3DI GCAATG 4 cut(s) 375, 727, 1460, 3196
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 975
BseBI CCWGG 4 cut(s) 282, 858, 1521, 2717
BseDI CCNNGG 2 cut(s) 1830, 2317
BseGI GGATG 8 cut(s) 12, 91, 277, 1939, 1941, 2716, 2750, 2880
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 6 cut(s) 365, 863, 982, 1139, 1831, 2514
BseMI GCAATG 4 cut(s) 375, 727, 1460, 3196
BseMII CTCAG 5 cut(s) 639, 1179, 1754, 2266, 2570
BseNI ACTGG 4 cut(s) 493, 868, 1927, 2284
BseRI GAGGAG 3 cut(s) 1271, 1322, 3089
BseYI CCCAGC 1 cut(s) 1897
BsgI GTGCAG 2 cut(s) 140, 937
BshFI GGCC 2 cut(s) 745, 3037
BshNI GGYRCC 1 cut(s) 2748
BsiHKCI CYCGRG 2 cut(s) 998, 2759
BsiSI CCGG 3 cut(s) 976, 2395, 3038
BslFI GGGAC 4 cut(s) 1115, 1714, 1914, 3161
BslI CCNNNNNNNGG 6 cut(s) 365, 863, 982, 1139, 1831, 2514
BsmAI GTCTC 4 cut(s) 1141, 1790, 2146, 3143
BsmFI GGGAC 4 cut(s) 1115, 1714, 1914, 3161
BsmI GAATGC 3 cut(s) 1246, 2458, 2875
BsnI GGCC 2 cut(s) 745, 3037
Bso31I GGTCTC 1 cut(s) 1790
BsoBI CYCGRG 2 cut(s) 998, 2759
Bsp119I TTCGAA 1 cut(s) 3182
Bsp13I TCCGGA 1 cut(s) 975
Bsp1407I TGTACA 2 cut(s) 1371, 1562
Bsp143I GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
Bsp1720I GCTNAGC 1 cut(s) 1740
Bsp19I CCATGG 1 cut(s) 1830
BspACI CCGC 3 cut(s) 950, 1789, 2986
BspANI GGCC 2 cut(s) 745, 3037
BspCNI CTCAG 5 cut(s) 638, 1180, 1753, 2265, 2569
BspEI TCCGGA 1 cut(s) 975
BspHI TCATGA 1 cut(s) 3070
BspLI GGNNCC 5 cut(s) 128, 852, 1131, 2315, 2750
BspMAI CTGCAG 2 cut(s) 790, 1716
BspMI ACCTGC 1 cut(s) 999
BspPI GGATC 3 cut(s) 121, 134, 1178
BspT104I TTCGAA 1 cut(s) 3182
BspT107I GGYRCC 1 cut(s) 2748
BspTNI GGTCTC 1 cut(s) 1790
BsrDI GCAATG 4 cut(s) 375, 727, 1460, 3196
BsrFI RCCGGY 2 cut(s) 2394, 3037
BsrGI TGTACA 2 cut(s) 1371, 1562
BsrI ACTGG 4 cut(s) 493, 868, 1927, 2284
BssAI RCCGGY 2 cut(s) 2394, 3037
BssECI CCNNGG 2 cut(s) 1830, 2317
BssMI GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
BssNI GRCGYC 1 cut(s) 2749
BssSI CACGAG 1 cut(s) 2658
BssT1I CCWWGG 2 cut(s) 1830, 2317
Bst2BI CACGAG 1 cut(s) 2658
Bst2UI CCWGG 4 cut(s) 282, 858, 1521, 2717
Bst6I CTCTTC 2 cut(s) 5, 624
BstACI GRCGYC 1 cut(s) 2749
BstAPI GCANNNNNTGC 2 cut(s) 1856, 2411
BstAUI TGTACA 2 cut(s) 1371, 1562
BstBAI YACGTR 1 cut(s) 2423
BstBI TTCGAA 1 cut(s) 3182
BstC8I GCNNGC 4 cut(s) 727, 1648, 1890, 2158
BstDEI CTNAG 5 cut(s) 625, 1188, 1740, 2252, 2556
BstDSI CCRYGG 1 cut(s) 1830
BstF5I GGATG 8 cut(s) 12, 91, 277, 1939, 1941, 2716, 2750, 2880
BstH2I RGCGCY 1 cut(s) 2752
BstHHI GCGC 2 cut(s) 935, 2751
BstKTI GATC 9 cut(s) 129, 457, 490, 1078, 1099, 1186, 2101, 2303, 3070
BstMAI GTCTC 4 cut(s) 1141, 1790, 2146, 3143
BstMBI GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
BstMWI GCNNNNNNNGC 9 cut(s) 726, 1856, 1894, 2411, 2567, 3195, 3325, 3355, 3403
BstNI CCWGG 4 cut(s) 282, 858, 1521, 2717
BstNSI RCATGY 5 cut(s) 236, 544, 933, 1090, 1691
BstSCI CCNGG 4 cut(s) 280, 856, 1519, 2715
BstSFI CTRYAG 5 cut(s) 786, 1712, 2136, 2850, 3060
BstV2I GAAGAC 3 cut(s) 227, 2547, 3090
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 3033
BstYI RGATCY 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 1188
BsuI GTATCC 1 cut(s) 3007
BsuRI GGCC 2 cut(s) 745, 3037
BtgI CCRYGG 1 cut(s) 1830
BtsCI GGATG 8 cut(s) 12, 91, 277, 1939, 1941, 2716, 2750, 2880
BtsI GCAGTG 1 cut(s) 1709
BtsIMutI CAGTG 4 cut(s) 1709, 2478, 2694, 2976
BveI ACCTGC 1 cut(s) 999
Cac8I GCNNGC 4 cut(s) 727, 1648, 1890, 2158
CaiI CAGNNNCTG 2 cut(s) 326, 1348
CciI TCATGA 1 cut(s) 3070
CfoI GCGC 2 cut(s) 935, 2751
Cfr10I RCCGGY 2 cut(s) 2394, 3037
Cfr13I GGNCC 3 cut(s) 851, 1129, 1997
CseI GACGC 2 cut(s) 2445, 2930
Csp6I GTAC 6 cut(s) 861, 1372, 1563, 1662, 1930, 2050
CspCI CAANNNNNGTGG 4 cut(s) 928, 963, 1698, 1733
CviQI GTAC 6 cut(s) 861, 1372, 1563, 1662, 1930, 2050
DdeI CTNAG 5 cut(s) 625, 1188, 1740, 2252, 2556
DinI GGCGCC 1 cut(s) 2750
DpnI GATC 9 cut(s) 128, 456, 489, 1077, 1098, 1185, 2100, 2302, 3069
DpnII GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
EaeI YGGCCR 1 cut(s) 3035
Eam1104I CTCTTC 2 cut(s) 5, 624
EarI CTCTTC 2 cut(s) 5, 624
EciI GGCGGA 1 cut(s) 1778
Eco130I CCWWGG 2 cut(s) 1830, 2317
Eco31I GGTCTC 1 cut(s) 1790
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 3 cut(s) 851, 1129, 1997
Eco57I CTGAAG 1 cut(s) 1370
Eco72I CACGTG 1 cut(s) 2423
Eco81I CCTNAGG 1 cut(s) 1188
Eco88I CYCGRG 2 cut(s) 998, 2759
EcoO109I RGGNCCY 1 cut(s) 851
EcoRI GAATTC 2 cut(s) 829, 1592
EcoRII CCWGG 4 cut(s) 280, 856, 1519, 2715
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 1830, 2317
EcoT22I ATGCAT 5 cut(s) 407, 546, 1621, 1941, 3005
EgeI GGCGCC 1 cut(s) 2750
EheI GGCGCC 1 cut(s) 2750
ErhI CCWWGG 2 cut(s) 1830, 2317
FalI AAGNNNNNCTT 2 cut(s) 2636, 2668
FaqI GGGAC 4 cut(s) 1115, 1714, 1914, 3161
FauNDI CATATG 1 cut(s) 2639
FbaI TGATCA 4 cut(s) 454, 1096, 2098, 3067
FokI GGATG 8 cut(s) 19, 98, 264, 1926, 1948, 2723, 2757, 2867
FspBI CTAG 7 cut(s) 45, 53, 956, 1637, 2472, 2495, 2933
GlaI GCGC 2 cut(s) 934, 2750
GsaI CCCAGC 1 cut(s) 1901
GsuI CTGGAG 2 cut(s) 476, 2600
HaeII RGCGCY 1 cut(s) 2752
HaeIII GGCC 2 cut(s) 745, 3037
HapII CCGG 3 cut(s) 976, 2395, 3038
HgaI GACGC 2 cut(s) 2445, 2930
HhaI GCGC 2 cut(s) 935, 2751
Hin1I GRCGYC 1 cut(s) 2749
Hin6I GCGC 2 cut(s) 933, 2749
HinP1I GCGC 2 cut(s) 933, 2749
HincII GTYRAC 3 cut(s) 988, 2460, 2553
HindII GTYRAC 3 cut(s) 988, 2460, 2553
HindIII AAGCTT 1 cut(s) 2732
HpaI GTTAAC 1 cut(s) 988
HpaII CCGG 3 cut(s) 976, 2395, 3038
HphI GGTGA 6 cut(s) 296, 815, 1423, 2205, 2336, 3242
Hpy166II GTNNAC 7 cut(s) 988, 1299, 1374, 1563, 2460, 2553, 2974
Hpy188I TCNGA 9 cut(s) 538, 628, 676, 1427, 1962, 2115, 2255, 2275, 2300
Hpy8I GTNNAC 7 cut(s) 988, 1299, 1374, 1563, 2460, 2553, 2974
HpyCH4IV ACGT 2 cut(s) 1273, 2422
HpyF10VI GCNNNNNNNGC 9 cut(s) 726, 1856, 1894, 2411, 2567, 3195, 3325, 3355, 3403
HpyF3I CTNAG 5 cut(s) 625, 1188, 1740, 2252, 2556
HpySE526I ACGT 2 cut(s) 1273, 2422
Hsp92I GRCGYC 1 cut(s) 2749
HspAI GCGC 2 cut(s) 933, 2749
KasI GGCGCC 1 cut(s) 2748
Kpn2I TCCGGA 1 cut(s) 975
Ksp22I TGATCA 4 cut(s) 454, 1096, 2098, 3067
KspAI GTTAAC 1 cut(s) 988
Kzo9I GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
LmnI GCTCC 3 cut(s) 940, 1345, 2581
LweI GCATC 4 cut(s) 1676, 1926, 1948, 2494
MaeI CTAG 7 cut(s) 45, 53, 956, 1637, 2472, 2495, 2933
MaeII ACGT 2 cut(s) 1273, 2422
MalI GATC 9 cut(s) 128, 456, 489, 1077, 1098, 1185, 2100, 2302, 3069
MboI GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
MfeI CAATTG 2 cut(s) 1335, 3171
MflI RGATCY 1 cut(s) 126
Mly113I GGCGCC 1 cut(s) 2749
MlyI GAGTC 5 cut(s) 217, 805, 966, 2548, 2609
MmeI TCCRAC 1 cut(s) 346
Mph1103I ATGCAT 5 cut(s) 407, 546, 1621, 1941, 3005
MroI TCCGGA 1 cut(s) 975
MroXI GAANNNNTTC 2 cut(s) 167, 3245
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 3 cut(s) 272, 2570, 2988
MspI CCGG 3 cut(s) 976, 2395, 3038
MspR9I CCNGG 4 cut(s) 282, 858, 1521, 2717
MunI CAATTG 2 cut(s) 1335, 3171
Mva1269I GAATGC 3 cut(s) 1246, 2458, 2875
MvaI CCWGG 4 cut(s) 282, 858, 1521, 2717
MwoI GCNNNNNNNGC 9 cut(s) 726, 1856, 1894, 2411, 2567, 3195, 3325, 3355, 3403
NarI GGCGCC 1 cut(s) 2749
NcoI CCATGG 1 cut(s) 1830
NdeI CATATG 1 cut(s) 2639
NdeII GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
NlaIV GGNNCC 5 cut(s) 128, 852, 1131, 2315, 2750
NmuCI GTSAC 7 cut(s) 228, 284, 886, 1082, 2474, 2660, 2993
NsiI ATGCAT 5 cut(s) 407, 546, 1621, 1941, 3005
NspI RCATGY 5 cut(s) 236, 544, 933, 1090, 1691
NspV TTCGAA 1 cut(s) 3182
PaeR7I CTCGAG 2 cut(s) 998, 2759
PagI TCATGA 1 cut(s) 3070
PciI ACATGT 1 cut(s) 1086
PctI GAATGC 3 cut(s) 1246, 2458, 2875
PdmI GAANNNNTTC 2 cut(s) 167, 3245
PflFI GACNNNGTC 2 cut(s) 226, 1421
PflMI CCANNNNNTGG 1 cut(s) 365
PfoI TCCNGGA 1 cut(s) 1519
PleI GAGTC 5 cut(s) 217, 805, 966, 2548, 2609
PluTI GGCGCC 1 cut(s) 2752
PmaCI CACGTG 1 cut(s) 2423
PmlI CACGTG 1 cut(s) 2423
PpsI GAGTC 5 cut(s) 217, 805, 966, 2548, 2609
Ppu21I YACGTR 1 cut(s) 2423
PpuMI RGGWCCY 1 cut(s) 851
PscI ACATGT 1 cut(s) 1086
PshBI ATTAAT 1 cut(s) 842
PsiI TTATAA 2 cut(s) 2166, 2529
Psp5II RGGWCCY 1 cut(s) 851
Psp6I CCWGG 4 cut(s) 280, 856, 1519, 2715
PspCI CACGTG 1 cut(s) 2423
PspFI CCCAGC 1 cut(s) 1897
PspGI CCWGG 4 cut(s) 280, 856, 1519, 2715
PspN4I GGNNCC 5 cut(s) 128, 852, 1131, 2315, 2750
PspPI GGNCC 3 cut(s) 851, 1129, 1997
PspPPI RGGWCCY 1 cut(s) 851
PspXI VCTCGAGB 1 cut(s) 998
PsrI GAACNNNNNNTAC 2 cut(s) 1546, 1578
PstI CTGCAG 2 cut(s) 790, 1716
PstNI CAGNNNCTG 2 cut(s) 326, 1348
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 2 cut(s) 226, 1421
PvuII CAGCTG 2 cut(s) 272, 2570
RsaI GTAC 6 cut(s) 862, 1373, 1564, 1663, 1931, 2051
RsaNI GTAC 6 cut(s) 861, 1372, 1563, 1662, 1930, 2050
RseI CAYNNNNRTG 1 cut(s) 282
Sau3AI GATC 9 cut(s) 126, 454, 487, 1075, 1096, 1183, 2098, 2300, 3067
Sau96I GGNCC 3 cut(s) 851, 1129, 1997
SchI GAGTC 5 cut(s) 217, 805, 966, 2548, 2609
ScrFI CCNGG 4 cut(s) 282, 858, 1521, 2717
SfaNI GCATC 4 cut(s) 1676, 1926, 1948, 2494
SfcI CTRYAG 5 cut(s) 786, 1712, 2136, 2850, 3060
SfoI GGCGCC 1 cut(s) 2750
Sfr274I CTCGAG 2 cut(s) 998, 2759
SfuI TTCGAA 1 cut(s) 3182
SinI GGWCC 3 cut(s) 851, 1129, 1997
SlaI CTCGAG 2 cut(s) 998, 2759
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 4 cut(s) 998, 2226, 2759, 2861
SmoI CTYRAG 4 cut(s) 998, 2226, 2759, 2861
SsiI CCGC 3 cut(s) 950, 1789, 2986
SspDI GGCGCC 1 cut(s) 2748
SspI AATATT 4 cut(s) 946, 1199, 1656, 3374
SspMI CTAG 7 cut(s) 45, 53, 956, 1637, 2472, 2495, 2933
StyD4I CCNGG 4 cut(s) 280, 856, 1519, 2715
StyI CCWWGG 2 cut(s) 1830, 2317
TaiI ACGT 2 cut(s) 1276, 2425
TatI WGTACW 4 cut(s) 1371, 1562, 1661, 1929
TscAI CASTG 4 cut(s) 1716, 2485, 2701, 2976
TseFI GTSAC 7 cut(s) 228, 284, 886, 1082, 2474, 2660, 2993
Tsp45I GTSAC 7 cut(s) 228, 284, 886, 1082, 2474, 2660, 2993
TspGWI ACGGA 4 cut(s) 593, 1284, 2278, 2530
TspRI CASTG 4 cut(s) 1716, 2485, 2701, 2976
Tth111I GACNNNGTC 2 cut(s) 226, 1421
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 3 cut(s) 851, 1129, 1997
VspI ATTAAT 1 cut(s) 842
XapI RAATTY 9 cut(s) 249, 476, 829, 1325, 1366, 1592, 2093, 2171, 2962
XceI RCATGY 5 cut(s) 236, 544, 933, 1090, 1691
XcmI CCANNNNNNNNNTGG 1 cut(s) 1991
XhoI CTCGAG 2 cut(s) 998, 2759
XmnI GAANNNNTTC 2 cut(s) 167, 3245
XspI CTAG 7 cut(s) 45, 53, 956, 1637, 2472, 2495, 2933
Zsp2I ATGCAT 5 cut(s) 407, 546, 1621, 1941, 3005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.