Rh4CG005400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000876
Physical Location & Seq
Reverse (-)
899249 .. 903741
4493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG005400.1

Sequence Viewer

Length: 1629 bp
ATGCCATGTTCAAGATTGTTGATGTTCAGAAATTTTAGGAGAGTTTCAGAGTCGGTTGTTACAAGCCTGAAACCAAGCTATCCAGAACCCGGAAAGTATGGAACTATTACTAGAGTTGGCCTTGGTCTTCCGCAATACAGATTCTACACGGACTATGTCTTGCCTACTAGAGGGAATAGCGCATTATTATTGTTTAATAAAACGAAGAGGAATTATTCCAAGAGTGGTTCTGTCATGACACATCATACCCAACTTGCGTTGAAAAGGCTCTTCGAAAGATTCACTTTAAGTGGTTCTAGATTCCGTCCTGTGAGTAAGTTTGCTCAAGCAGTCGCCTTGTTCATAACTCGGCCGAACTTTGTACTGCCCGGTACTTTTGCCATCACAAGTGGGAAGCTAGCATGGGCACAGAGGTCTCTGGCAGAAATGGACCAGTCGCAGAATACCATATACATGCGTGCTCAAGATGGACATGCTTTTATCACATCATTACTATTGTCGGCATTAGAAGGTGTGATATTGTTACTGAGAGCACTCTATCTGGGGATTTTGTTCTCACCCAGTATAGTGATGATGCCTTTCGTCGCTTACTGTGGACCTGAGTTTAGGAGATTGTGGCTTCATGTTGTTCATCGTACTTTGGAAAAAGCAGGTCCAGCTTTCATCAAATGGGGTCAGTGGGCTGCTACACGGCCTGATCTTTTCCCCAGAGACTTATGCATCAAGCTTTCAGAGCTTCACATGAAAGCTCCTGAACATAGCTTTGCCTACACAAAAAAAACTATCGAAGGAGCATTTGGACGCAAGCTCTCTGAGATTTTTGAGAACTTTGAAGAGGAGCCAGTAGCATCTGGAAGTATTGCTCAAGTGCATCGAGCTACTTTGAGATTTCGATACCCAAACCAAGAGGTGAAGCCCATGGTAGTTGCCGTAAAGGTCAGACATCCTGGTGTTAGTGAATCAATTAGGAGAGATTTTGTGATTATCAATTCAGTTGCAAAATTGTCAATGTTCATTCCTACTTTAAAGTGGTGGAGATTAGATGAAAGCGTACAGCAGTTCTCAGTTTTCATGATGTCTCAAGTTGATCTTGCAAGGGAAGCTGCCCATTTGAGCCGTTTTATCTATAATTTCCGTCATCATAAGGATGTCTCTTTTCCAAAGCCTTTATATCCACTTGTGCATCCTGCTGTTTTGGTGGAAACTTATGAGCAAGGGGAATGTGTCTCAAACTATCTTCATGAGCTTCCCGGGCAAGATCAGATTAAAGCTGCAGTTGCTCACAGTGGAACAAAGGCATATTTAAAGATGCTTCTGGTGGACAACTATATACATGCGGACATGCATCCTGGAAATATCCTTGTCCGGGTGCCTCAGAGCAACTCTTTTTGGAAGAAACTCTTCAAGTTAAAGCCTCATGTCATTTTTCTTGATGTAGGCATGACTGCTGAACTCTCTAGAACTGACCAAGTAAATTTAGTTGGACTTTTCAAGGCTATCGCTCGTCGTGATGGAGGCACTGCCGCTGAGTGCACACTCAGACTATCTAATCAACAGAAATGCCCAAATCCGGAAGCTTTCATTGAGGTGAAATTTTTAGGCCATGTAACTTCATTAGTTCATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

542

Amino Acids

61.71

Weight (kDa)

9.82

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 246 - 508 5.6e-45 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 1369
AccIII TCCGGA 1 cut(s) 1570
AciI CCGC 3 cut(s) 131, 1337, 1524
AcoI YGGCCR 1 cut(s) 350
AcsI RAATTY 3 cut(s) 31, 1474, 1592
AfaI GTAC 4 cut(s) 363, 373, 637, 1053
AfiI CCNNNNNNNGG 4 cut(s) 89, 170, 1366, 1570
AgsI TTSAA 5 cut(s) 12, 262, 833, 1405, 1492
AjnI CCWGG 2 cut(s) 946, 1348
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
Alw21I GWGCWC 3 cut(s) 463, 535, 1535
Alw26I GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
Alw44I GTGCAC 1 cut(s) 1531
Ama87I CYCGRG 1 cut(s) 1250
Aor13HI TCCGGA 1 cut(s) 1570
AoxI GGCC 4 cut(s) 118, 350, 692, 1600
ApaLI GTGCAC 1 cut(s) 1531
ApeKI GCWGC 3 cut(s) 683, 1103, 1271
ApoI RAATTY 3 cut(s) 31, 1474, 1592
Asp700I GAANNNNTTC 1 cut(s) 1400
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 3 cut(s) 430, 596, 653
AsuC2I CCSGG 5 cut(s) 90, 369, 1251, 1252, 1367
AsuHPI GGTGA 3 cut(s) 549, 922, 1600
AsuII TTCGAA 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 1250
AvaII GGWCC 3 cut(s) 430, 596, 653
BaeGI GKGCMC 2 cut(s) 409, 1535
BanI GGYRCC 1 cut(s) 1369
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 3 cut(s) 463, 535, 1535
BbvI GCAGC 3 cut(s) 670, 1090, 1258
BccI CCATC 3 cut(s) 389, 461, 1505
BceAI ACGGC 3 cut(s) 707, 914, 1101
BciT130I CCWGG 2 cut(s) 948, 1350
BcnI CCSGG 5 cut(s) 90, 369, 1251, 1252, 1367
BcoDI GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
BfaI CTAG 6 cut(s) 111, 168, 297, 398, 1458, 1627
BfmI CTRYAG 1 cut(s) 1272
BfuAI ACCTGC 1 cut(s) 641
BisI GCNGC 4 cut(s) 684, 1104, 1272, 1524
BlsI GCNGC 4 cut(s) 685, 1105, 1273, 1525
Bme1390I CCNGG 7 cut(s) 90, 369, 948, 1251, 1252, 1350, 1367
Bme18I GGWCC 3 cut(s) 430, 596, 653
BmeT110I CYCGRG 1 cut(s) 1250
BmgT120I GGNCC 3 cut(s) 430, 596, 653
BmiI GGNNCC 2 cut(s) 840, 1371
BmrFI CCNGG 7 cut(s) 90, 369, 948, 1251, 1252, 1350, 1367
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 7 cut(s) 564, 729, 857, 880, 1192, 1299, 1354
BmtI GCTAGC 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 273
BpuEI CTTGAG 4 cut(s) 309, 447, 849, 1065
BpuMI CCSGG 5 cut(s) 90, 369, 1251, 1252, 1367
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 121, 918, 1250
BsaWI WCCGGW 1 cut(s) 1570
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 170, 1366, 1570
Bse1I ACTGG 3 cut(s) 433, 561, 842
BseAI TCCGGA 1 cut(s) 1570
BseBI CCWGG 2 cut(s) 948, 1350
BseDI CCNNGG 3 cut(s) 121, 918, 1250
BseGI GGATG 4 cut(s) 943, 1153, 1183, 1345
BseLI CCNNNNNNNGG 4 cut(s) 89, 170, 1366, 1570
BseMII CTCAG 7 cut(s) 518, 591, 804, 1077, 1388, 1518, 1552
BseNI ACTGG 3 cut(s) 433, 561, 842
BseRI GAGGAG 1 cut(s) 851
BseSI GKGCMC 2 cut(s) 409, 1535
BseX3I CGGCCG 1 cut(s) 350
BseXI GCAGC 3 cut(s) 670, 1090, 1258
Bsh1285I CGRYCG 1 cut(s) 353
BshFI GGCC 4 cut(s) 120, 352, 694, 1602
BshNI GGYRCC 1 cut(s) 1369
BsiEI CGRYCG 1 cut(s) 353
BsiHKAI GWGCWC 3 cut(s) 463, 535, 1535
BsiHKCI CYCGRG 1 cut(s) 1250
BsiSI CCGG 5 cut(s) 90, 369, 1251, 1366, 1571
BslI CCNNNNNNNGG 4 cut(s) 89, 170, 1366, 1570
BsmAI GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
BsnI GGCC 4 cut(s) 120, 352, 694, 1602
Bso31I GGTCTC 1 cut(s) 420
BsoBI CYCGRG 1 cut(s) 1250
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 4 cut(s) 409, 463, 535, 1535
Bsp13I TCCGGA 1 cut(s) 1570
Bsp143I GATC 3 cut(s) 697, 1087, 1258
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 3 cut(s) 131, 1337, 1524
BspANI GGCC 4 cut(s) 120, 352, 694, 1602
BspCNI CTCAG 7 cut(s) 519, 592, 805, 1076, 1387, 1519, 1551
BspEI TCCGGA 1 cut(s) 1570
BspHI TCATGA 3 cut(s) 234, 1071, 1240
BspLI GGNNCC 2 cut(s) 840, 1371
BspMAI CTGCAG 1 cut(s) 1276
BspMI ACCTGC 1 cut(s) 641
BspOI GCTAGC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 1369
BspTNI GGTCTC 1 cut(s) 420
BsrI ACTGG 3 cut(s) 433, 561, 842
BssECI CCNNGG 3 cut(s) 121, 918, 1250
BssMI GATC 3 cut(s) 697, 1087, 1258
BssT1I CCWWGG 2 cut(s) 121, 918
Bst2UI CCWGG 2 cut(s) 948, 1350
Bst4CI ACNGT 2 cut(s) 593, 1286
Bst6I CTCTTC 4 cut(s) 200, 275, 828, 1406
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 399, 459, 806
BstDEI CTNAG 7 cut(s) 527, 600, 813, 1063, 1374, 1527, 1538
BstDSI CCRYGG 1 cut(s) 918
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 4 cut(s) 943, 1153, 1183, 1345
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 3 cut(s) 700, 1090, 1261
BstMAI GTCTC 5 cut(s) 420, 705, 1083, 1156, 1231
BstMBI GATC 3 cut(s) 697, 1087, 1258
BstMCI CGRYCG 1 cut(s) 353
BstMWI GCNNNNNNNGC 5 cut(s) 656, 733, 1100, 1252, 1277
BstNI CCWGG 2 cut(s) 948, 1350
BstNSI RCATGY 4 cut(s) 457, 476, 1337, 1345
BstSCI CCNGG 7 cut(s) 88, 367, 946, 1249, 1250, 1348, 1365
BstSFI CTRYAG 1 cut(s) 1272
BstSLI GKGCMC 2 cut(s) 409, 1535
BstV1I GCAGC 3 cut(s) 670, 1090, 1258
BstV2I GAAGAC 1 cut(s) 119
BstZI CGGCCG 1 cut(s) 350
BsuRI GGCC 4 cut(s) 120, 352, 694, 1602
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 4 cut(s) 943, 1153, 1183, 1345
BtsI GCAGTG 1 cut(s) 1518
BtsIMutI CAGTG 3 cut(s) 683, 1291, 1518
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 3 cut(s) 399, 459, 806
CciI TCATGA 3 cut(s) 234, 1071, 1240
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 430, 596, 653
Cfr9I CCCGGG 1 cut(s) 1250
CseI GACGC 1 cut(s) 810
Csp6I GTAC 4 cut(s) 362, 372, 636, 1052
CviQI GTAC 4 cut(s) 362, 372, 636, 1052
DdeI CTNAG 7 cut(s) 527, 600, 813, 1063, 1374, 1527, 1538
DpnI GATC 3 cut(s) 699, 1089, 1260
DpnII GATC 3 cut(s) 697, 1087, 1258
DraI TTTAAA 2 cut(s) 1026, 1305
EaeI YGGCCR 1 cut(s) 350
EagI CGGCCG 1 cut(s) 350
Eam1104I CTCTTC 4 cut(s) 200, 275, 828, 1406
EarI CTCTTC 4 cut(s) 200, 275, 828, 1406
EclXI CGGCCG 1 cut(s) 350
Eco130I CCWWGG 2 cut(s) 121, 918
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 3 cut(s) 430, 596, 653
Eco52I CGGCCG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 1250
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoRII CCWGG 2 cut(s) 946, 1348
EcoT14I CCWWGG 2 cut(s) 121, 918
EcoT22I ATGCAT 2 cut(s) 722, 1347
ErhI CCWWGG 2 cut(s) 121, 918
FalI AAGNNNNNCTT 6 cut(s) 268, 300, 1074, 1106, 1385, 1417
Fnu4HI GCNGC 4 cut(s) 684, 1104, 1272, 1524
FokI GGATG 4 cut(s) 930, 1160, 1170, 1332
Fsp4HI GCNGC 4 cut(s) 684, 1104, 1272, 1524
FspBI CTAG 6 cut(s) 111, 168, 297, 398, 1458, 1627
GlaI GCGC 1 cut(s) 181
GluI GCNGC 4 cut(s) 684, 1104, 1272, 1524
HaeIII GGCC 4 cut(s) 120, 352, 694, 1602
HapII CCGG 5 cut(s) 90, 369, 1251, 1366, 1571
HgaI GACGC 1 cut(s) 810
HhaI GCGC 1 cut(s) 182
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 2 cut(s) 725, 1575
HinfI GANTC 5 cut(s) 50, 141, 279, 300, 959
HpaII CCGG 5 cut(s) 90, 369, 1251, 1366, 1571
HphI GGTGA 3 cut(s) 549, 922, 1600
Hpy166II GTNNAC 3 cut(s) 596, 1321, 1533
Hpy188I TCNGA 8 cut(s) 29, 49, 733, 814, 941, 1263, 1377, 1541
Hpy8I GTNNAC 3 cut(s) 596, 1321, 1533
Hpy99I CGWCG 2 cut(s) 587, 1509
HpyAV CCTTC 2 cut(s) 503, 782
HpyCH4III ACNGT 2 cut(s) 593, 1286
HpyCH4V TGCA 8 cut(s) 720, 871, 998, 1094, 1183, 1274, 1345, 1533
HpyF10VI GCNNNNNNNGC 5 cut(s) 656, 733, 1100, 1252, 1277
HpyF3I CTNAG 7 cut(s) 527, 600, 813, 1063, 1374, 1527, 1538
HspAI GCGC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 1570
Kzo9I GATC 3 cut(s) 697, 1087, 1258
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 3 cut(s) 754, 791, 838
Lsp1109I GCAGC 3 cut(s) 670, 1090, 1258
LweI GCATC 7 cut(s) 564, 729, 857, 880, 1192, 1299, 1354
MaeI CTAG 6 cut(s) 111, 168, 297, 398, 1458, 1627
MaeIII GTNAC 3 cut(s) 58, 522, 1606
MalI GATC 3 cut(s) 699, 1089, 1260
MboI GATC 3 cut(s) 697, 1087, 1258
MboII GAAGA 7 cut(s) 119, 217, 262, 845, 1229, 1393, 1405
MhlI GDGCHC 4 cut(s) 409, 463, 535, 1535
MluCI AATT 8 cut(s) 31, 211, 963, 988, 1001, 1129, 1474, 1592
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 1462
MnlI CCTC 9 cut(s) 164, 201, 405, 829, 901, 1383, 1425, 1508, 1579
Mph1103I ATGCAT 2 cut(s) 722, 1347
MroI TCCGGA 1 cut(s) 1570
MroXI GAANNNNTTC 1 cut(s) 1400
MseI TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1409
MslI CAYNNNNRTG 4 cut(s) 452, 948, 1146, 1586
MspA1I CMGCKG 1 cut(s) 1526
MspI CCGG 5 cut(s) 90, 369, 1251, 1366, 1571
MspR9I CCNGG 7 cut(s) 90, 369, 948, 1251, 1252, 1350, 1367
MvaI CCWGG 2 cut(s) 948, 1350
MwoI GCNNNNNNNGC 5 cut(s) 656, 733, 1100, 1252, 1277
NciI CCSGG 5 cut(s) 90, 369, 1251, 1252, 1367
NcoI CCATGG 1 cut(s) 918
NdeII GATC 3 cut(s) 697, 1087, 1258
NheI GCTAGC 1 cut(s) 397
NlaIV GGNNCC 2 cut(s) 840, 1371
NmeAIII GCCGAG 1 cut(s) 328
NsiI ATGCAT 2 cut(s) 722, 1347
NspI RCATGY 4 cut(s) 457, 476, 1337, 1345
NspV TTCGAA 1 cut(s) 273
PagI TCATGA 3 cut(s) 234, 1071, 1240
PciSI GCTCTTC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 1400
PfeI GAWTC 4 cut(s) 141, 279, 300, 959
PflFI GACNNNGTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 1348
PkrI GCNGC 4 cut(s) 685, 1105, 1273, 1525
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 946, 1348
PspGI CCWGG 2 cut(s) 946, 1348
PspN4I GGNNCC 2 cut(s) 840, 1371
PspPI GGNCC 3 cut(s) 430, 596, 653
PstI CTGCAG 1 cut(s) 1276
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 4 cut(s) 363, 373, 637, 1053
RsaNI GTAC 4 cut(s) 362, 372, 636, 1052
RseI CAYNNNNRTG 4 cut(s) 452, 948, 1146, 1586
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1409
SatI GCNGC 4 cut(s) 684, 1104, 1272, 1524
Sau3AI GATC 3 cut(s) 697, 1087, 1258
Sau96I GGNCC 3 cut(s) 430, 596, 653
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 7 cut(s) 90, 369, 948, 1251, 1252, 1350, 1367
SduI GDGCHC 4 cut(s) 409, 463, 535, 1535
SfaNI GCATC 7 cut(s) 564, 729, 857, 880, 1192, 1299, 1354
SfcI CTRYAG 1 cut(s) 1272
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 3 cut(s) 430, 596, 653
SmaI CCCGGG 1 cut(s) 1252
SmiMI CAYNNNNRTG 4 cut(s) 452, 948, 1146, 1586
SmlI CTYRAG 4 cut(s) 324, 462, 864, 1080
SmoI CTYRAG 4 cut(s) 324, 462, 864, 1080
Sse9I AATT 8 cut(s) 31, 211, 963, 988, 1001, 1129, 1474, 1592
SsiI CCGC 3 cut(s) 131, 1337, 1524
SspMI CTAG 6 cut(s) 111, 168, 297, 398, 1458, 1627
StyD4I CCNGG 7 cut(s) 88, 367, 946, 1249, 1250, 1348, 1365
StyI CCWWGG 2 cut(s) 121, 918
TaaI ACNGT 2 cut(s) 593, 1286
TaqI TCGA 4 cut(s) 273, 786, 874, 892
TasI AATT 8 cut(s) 31, 211, 963, 988, 1001, 1129, 1474, 1592
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 1526
TfiI GAWTC 4 cut(s) 141, 279, 300, 959
Tru1I TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1409
Tru9I TTAA 6 cut(s) 195, 287, 1025, 1266, 1304, 1409
TscAI CASTG 3 cut(s) 683, 1291, 1525
TseI GCWGC 3 cut(s) 683, 1103, 1271
TspGWI ACGGA 3 cut(s) 164, 293, 1124
TspMI CCCGGG 1 cut(s) 1250
TspRI CASTG 3 cut(s) 683, 1291, 1525
Tth111I GACNNNGTC 1 cut(s) 155
VneI GTGCAC 1 cut(s) 1531
VpaK11BI GGWCC 3 cut(s) 430, 596, 653
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 3 cut(s) 31, 1474, 1592
XbaI TCTAGA 2 cut(s) 296, 1457
XceI RCATGY 4 cut(s) 457, 476, 1337, 1345
XmaI CCCGGG 1 cut(s) 1250
XmnI GAANNNNTTC 1 cut(s) 1400
XspI CTAG 6 cut(s) 111, 168, 297, 398, 1458, 1627
Zsp2I ATGCAT 2 cut(s) 722, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.