RLG00000031339

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000876
Physical Location & Seq
Reverse (-)
4228198 .. 4277472
49275 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031339

Sequence Viewer

Length: 1095 bp
ATGGAAGCTTTGCATTTATTGCTGTTCCAAAATCAATTATGCACAGAAATTTTTGAAAACTTTGAAGAGACACCAGTAGCATCTGGGAGTATTGCTCAAGTGCATCGGGCTACTTTGAAATTTCGATACCCTGGTCAACAGGTGAAGCCCATAGTAGTTGCAGTTAAGGTTAGACATCCTGGTGTTGGTGAATCAATTAGGAGAGATTTTGTAATAATCAATTTAGTAGCAAAAATGTCAAAGTTCATTCCTGCTTTAAAGTGGTGGAGATTGGATGAAAGTGTACAACAGTTTTCAGTTTTTATGATGTCTCAAGTTGACCTTGCAAGGGAAGCTGCCAATTTGAGCCGCTTTACTTATAATTTTCGTAGATGGAAGGACGTCTCTTTCCCAAAGCCTTTGTATCCACTTGTGCATCCTGCTGTTTTAGTGGAAACGTATGAGCAAGGGGAATGCGTCTCACATTATGTTGATGATCTTCAAGGGCACGAACGGATTAAATCAGCACTTGCTCACATTGGAACACATGCACTTCTGAAGATGCTCCTGGTGGACAACTTTATACATGCAGACATGCATCCTGGGAACATACTTGTTCGGGTGGCTCAGAACAAGCCTTCTCGGAAGCGACTGTTTAAATCAAAGCCTCATGTCATTTTCCTTGATGCAGGCATGACTGCTGAACTCTCTAGAAGTGACAGAGTGAATTTACTTGAATTTTTCAAGGCTGTTGCACGTTGTGATGGGCGCACTGCTGCTGAGTGCACACTAAGACTCTCTAAGCAACAGAATTGCCCAAATCCAAAGGCTTTCATTGAGGAAGTGGAGGAGTCATTCACTTTCTGGGGTACTCCAGAAGGTGATCTGGTTCATCCTGCTGATTGCATGCAGCAGTTACTGGAGAAAGTTAGGCGGCATAGAGTCAATGTTGATGGCAATGTTTGTACTGTCGTGGTGACAACATTGGTTCTTGAGGGATGGCAGAGGAAACTTGATCCAGCATACAATGTGATGCATACCTTGCATACTCTGCTTCTCAAGGCCGACTGGGCAAAGTCCCTTTCATACACAATTGAGGGGCTAATGGCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

365

Amino Acids

41.55

Weight (kDa)

8.75

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 14 - 254 3.2e-44 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AatII GACGTC 1 cut(s) 384
AciI CCGC 2 cut(s) 349, 913
AclWI GGATC 1 cut(s) 989
AcsI RAATTY 4 cut(s) 48, 119, 706, 716
AcuI CTGAAG 1 cut(s) 557
AcyI GRCGYC 1 cut(s) 381
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 3 cut(s) 285, 850, 946
AfiI CCNNNNNNNGG 2 cut(s) 185, 328
AgsI TTSAA 6 cut(s) 56, 65, 118, 482, 716, 724
AjnI CCWGG 4 cut(s) 130, 178, 546, 580
AluBI AGCT 2 cut(s) 8, 335
AluI AGCT 2 cut(s) 8, 335
Alw21I GWGCWC 1 cut(s) 767
Alw26I GTCTC 4 cut(s) 62, 315, 388, 463
Alw44I GTGCAC 1 cut(s) 763
AlwI GGATC 1 cut(s) 989
AlwNI CAGNNNCTG 1 cut(s) 898
AoxI GGCC 1 cut(s) 1041
ApaLI GTGCAC 1 cut(s) 763
ApeKI GCWGC 3 cut(s) 335, 755, 889
ApoI RAATTY 4 cut(s) 48, 119, 706, 716
AspLEI GCGC 1 cut(s) 750
AsuHPI GGTGA 4 cut(s) 154, 200, 872, 967
BaeGI GKGCMC 2 cut(s) 489, 767
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
Bbv12I GWGCWC 1 cut(s) 767
BbvI GCAGC 3 cut(s) 322, 742, 901
BccI CCATC 4 cut(s) 366, 737, 926, 972
BciT130I CCWGG 4 cut(s) 132, 180, 548, 582
BciVI GTATCC 1 cut(s) 414
BcoDI GTCTC 4 cut(s) 62, 315, 388, 463
BfaI CTAG 1 cut(s) 690
BfuI GTATCC 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 1049
BisI GCNGC 5 cut(s) 336, 349, 756, 890, 914
BlsI GCNGC 5 cut(s) 337, 350, 757, 891, 915
Bme1390I CCNGG 4 cut(s) 132, 180, 548, 582
BmiI GGNNCC 1 cut(s) 1089
BmrFI CCNGG 4 cut(s) 132, 180, 548, 582
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 7 cut(s) 89, 112, 424, 531, 586, 655, 1002
BmuI ACTGGG 1 cut(s) 1057
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpmI CTGGAG 2 cut(s) 837, 920
BpuEI CTTGAG 4 cut(s) 81, 297, 992, 1022
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 130, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 328
Bse1I ACTGG 3 cut(s) 74, 903, 1052
Bse3DI GCAATG 1 cut(s) 943
BseBI CCWGG 4 cut(s) 132, 180, 548, 582
BseDI CCNNGG 2 cut(s) 130, 581
BseGI GGATG 6 cut(s) 175, 280, 415, 577, 871, 983
BseLI CCNNNNNNNGG 2 cut(s) 185, 328
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 2 cut(s) 620, 750
BseNI ACTGG 3 cut(s) 74, 903, 1052
BseRI GAGGAG 1 cut(s) 842
BseSI GKGCMC 2 cut(s) 489, 767
BseXI GCAGC 3 cut(s) 322, 742, 901
BshFI GGCC 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 767
BslFI GGGAC 1 cut(s) 1042
BslI CCNNNNNNNGG 2 cut(s) 185, 328
BsmAI GTCTC 4 cut(s) 62, 315, 388, 463
BsmBI CGTCTC 2 cut(s) 388, 463
BsmFI GGGAC 1 cut(s) 1042
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 1043
Bsp1286I GDGCHC 2 cut(s) 489, 767
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 3 cut(s) 475, 862, 994
BspACI CCGC 2 cut(s) 349, 913
BspANI GGCC 1 cut(s) 1043
BspCNI CTCAG 2 cut(s) 619, 751
BspLI GGNNCC 1 cut(s) 1089
BspPI GGATC 1 cut(s) 989
BsrDI GCAATG 1 cut(s) 943
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 3 cut(s) 74, 903, 1052
BssECI CCNNGG 2 cut(s) 130, 581
BssMI GATC 3 cut(s) 475, 862, 994
BssNI GRCGYC 1 cut(s) 381
Bst2UI CCWGG 4 cut(s) 132, 180, 548, 582
Bst4CI ACNGT 3 cut(s) 291, 633, 949
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 3 cut(s) 19, 1021, 1030
BstAUI TGTACA 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 670, 887
BstDEI CTNAG 5 cut(s) 606, 759, 770, 780, 1092
BstF5I GGATG 6 cut(s) 175, 280, 415, 577, 871, 983
BstHHI GCGC 1 cut(s) 750
BstKTI GATC 3 cut(s) 478, 865, 997
BstMAI GTCTC 4 cut(s) 62, 315, 388, 463
BstMBI GATC 3 cut(s) 475, 862, 994
BstMWI GCNNNNNNNGC 5 cut(s) 19, 332, 1021, 1030, 1049
BstNI CCWGG 4 cut(s) 132, 180, 548, 582
BstNSI RCATGY 4 cut(s) 530, 569, 577, 889
BstSCI CCNGG 4 cut(s) 130, 178, 546, 580
BstSLI GKGCMC 2 cut(s) 489, 767
BstV1I GCAGC 3 cut(s) 322, 742, 901
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 1043
BtsCI GGATG 6 cut(s) 175, 280, 415, 577, 871, 983
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 1 cut(s) 750
Cac8I GCNNGC 2 cut(s) 670, 887
CaiI CAGNNNCTG 1 cut(s) 898
CfoI GCGC 1 cut(s) 750
CseI GACGC 1 cut(s) 445
Csp6I GTAC 3 cut(s) 284, 849, 945
CviAII CATG 6 cut(s) 527, 566, 574, 650, 673, 886
CviQI GTAC 3 cut(s) 284, 849, 945
DdeI CTNAG 5 cut(s) 606, 759, 770, 780, 1092
DpnI GATC 3 cut(s) 477, 864, 996
DpnII GATC 3 cut(s) 475, 862, 994
DraI TTTAAA 2 cut(s) 258, 637
DraIII CACNNNGTG 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 557
EcoRII CCWGG 4 cut(s) 130, 178, 546, 580
EcoT22I ATGCAT 2 cut(s) 579, 1017
Esp3I CGTCTC 2 cut(s) 388, 463
FaeI CATG 6 cut(s) 530, 569, 577, 653, 676, 889
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 1042
FatI CATG 6 cut(s) 526, 565, 573, 649, 672, 885
Fnu4HI GCNGC 5 cut(s) 336, 349, 756, 890, 914
FokI GGATG 6 cut(s) 162, 287, 402, 564, 858, 990
Fsp4HI GCNGC 5 cut(s) 336, 349, 756, 890, 914
FspBI CTAG 1 cut(s) 690
GlaI GCGC 1 cut(s) 749
GluI GCNGC 5 cut(s) 336, 349, 756, 890, 914
GsuI CTGGAG 2 cut(s) 837, 920
HaeIII GGCC 1 cut(s) 1043
HgaI GACGC 1 cut(s) 445
HhaI GCGC 1 cut(s) 750
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 6 cut(s) 530, 569, 577, 653, 676, 889
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HincII GTYRAC 2 cut(s) 137, 319
HindII GTYRAC 2 cut(s) 137, 319
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 4 cut(s) 191, 774, 830, 921
HphI GGTGA 4 cut(s) 154, 200, 872, 967
Hpy166II GTNNAC 5 cut(s) 137, 284, 319, 553, 765
Hpy188I TCNGA 3 cut(s) 537, 609, 624
Hpy188III TCNNGA 3 cut(s) 690, 854, 971
Hpy8I GTNNAC 5 cut(s) 137, 284, 319, 553, 765
HpyAV CCTTC 3 cut(s) 370, 627, 851
HpyCH4III ACNGT 3 cut(s) 291, 633, 949
HpyCH4IV ACGT 3 cut(s) 381, 437, 736
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 332, 1021, 1030, 1049
HpyF3I CTNAG 5 cut(s) 606, 759, 770, 780, 1092
HpySE526I ACGT 3 cut(s) 381, 437, 736
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 6 cut(s) 530, 569, 577, 653, 676, 889
HspAI GCGC 1 cut(s) 748
Kzo9I GATC 3 cut(s) 475, 862, 994
LmnI GCTCC 2 cut(s) 549, 1093
Lsp1109I GCAGC 3 cut(s) 322, 742, 901
LweI GCATC 7 cut(s) 89, 112, 424, 531, 586, 655, 1002
MaeI CTAG 1 cut(s) 690
MaeII ACGT 3 cut(s) 381, 437, 736
MaeIII GTNAC 3 cut(s) 695, 894, 955
MalI GATC 3 cut(s) 477, 864, 996
MboI GATC 3 cut(s) 475, 862, 994
MboII GAAGA 3 cut(s) 77, 470, 550
MfeI CAATTG 1 cut(s) 1071
MhlI GDGCHC 2 cut(s) 489, 767
MlyI GAGTC 3 cut(s) 768, 839, 930
MnlI CCTC 6 cut(s) 657, 811, 820, 967, 978, 1069
Mph1103I ATGCAT 2 cut(s) 579, 1017
MseI TTAA 4 cut(s) 165, 257, 498, 636
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 4 cut(s) 132, 180, 548, 582
MunI CAATTG 1 cut(s) 1071
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 4 cut(s) 132, 180, 548, 582
MwoI GCNNNNNNNGC 5 cut(s) 19, 332, 1021, 1030, 1049
NdeII GATC 3 cut(s) 475, 862, 994
NlaIII CATG 6 cut(s) 530, 569, 577, 653, 676, 889
NlaIV GGNNCC 1 cut(s) 1089
NmuCI GTSAC 2 cut(s) 695, 955
NsiI ATGCAT 2 cut(s) 579, 1017
NspI RCATGY 4 cut(s) 530, 569, 577, 889
PaeI GCATGC 1 cut(s) 889
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 5 cut(s) 337, 350, 757, 891, 915
PleI GAGTC 3 cut(s) 768, 838, 929
PpsI GAGTC 3 cut(s) 768, 838, 929
PsiI TTATAA 1 cut(s) 360
Psp6I CCWGG 4 cut(s) 130, 178, 546, 580
PspGI CCWGG 4 cut(s) 130, 178, 546, 580
PspN4I GGNNCC 1 cut(s) 1089
PstNI CAGNNNCTG 1 cut(s) 898
RsaI GTAC 3 cut(s) 285, 850, 946
RsaNI GTAC 3 cut(s) 284, 849, 945
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 4 cut(s) 165, 257, 498, 636
SatI GCNGC 5 cut(s) 336, 349, 756, 890, 914
Sau3AI GATC 3 cut(s) 475, 862, 994
SchI GAGTC 3 cut(s) 768, 839, 930
ScrFI CCNGG 4 cut(s) 132, 180, 548, 582
SduI GDGCHC 2 cut(s) 489, 767
SfaNI GCATC 7 cut(s) 89, 112, 424, 531, 586, 655, 1002
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 4 cut(s) 96, 312, 971, 1037
SmoI CTYRAG 4 cut(s) 96, 312, 971, 1037
SphI GCATGC 1 cut(s) 889
SsiI CCGC 2 cut(s) 349, 913
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 130, 178, 546, 580
TaaI ACNGT 3 cut(s) 291, 633, 949
TaiI ACGT 3 cut(s) 384, 440, 739
TaqI TCGA 1 cut(s) 124
TatI WGTACW 2 cut(s) 283, 944
TauI GCSGC 2 cut(s) 351, 916
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 4 cut(s) 165, 257, 498, 636
Tru9I TTAA 4 cut(s) 165, 257, 498, 636
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 2 cut(s) 695, 955
TseI GCWGC 3 cut(s) 335, 755, 889
Tsp45I GTSAC 2 cut(s) 695, 955
TspDTI ATGAA 5 cut(s) 235, 291, 802, 860, 1053
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 757
VneI GTGCAC 1 cut(s) 763
XapI RAATTY 4 cut(s) 48, 119, 706, 716
XbaI TCTAGA 1 cut(s) 689
XceI RCATGY 4 cut(s) 530, 569, 577, 889
XspI CTAG 1 cut(s) 690
ZraI GACGTC 1 cut(s) 382
Zsp2I ATGCAT 2 cut(s) 579, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.