Rroxscaffold_1G00070010

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000876
Physical Location & Seq
Forward (+)
90843780 .. 90846163
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070010.1

Sequence Viewer

Length: 852 bp
ATGTCTCAAGTTGACCTTGCAAGGGAAGCTGCCAATTTGAGCCGCTTTACTTATAATTTTCGTAGATGGAAGGACGTCTCTTTCCCAAAGCCTTTGTATCCACTTGTGCATCCTGCTGTCTTAGTGGAAACGTATGAGCAAGGGGAATGCGTCTCACATTATGTTGATGATCTTCAAGGGCATGAACGGATTAAATCTGCAGTTGCTGACATTGGAACACATGCACTTCTGAAGATGCTCCTGGTGGACAACTTTATACATGCAGACATGCATCCTGGGAACATACTTGTTCGGGTGGCTCAGAACAAGCCTTCTCGGAAGCGACTGTTCAAATCAAAGCCTCATGTCATTTTCCTTGATGTAGGCATGACTGCTGAACTCTCTAGAAGTGACAGAGTGAATTTACTTGAATTTTTCAAGGCTGTTGCACGTCGTGATTGGCGCACTGCTGCTGAGTGCACACTAAGACTCTCTAAGCAACAGAATTGCCCAAATCCAAAAGCTTTCATTGAGGATCCAATATTATGTGAATACATTTATGAACTTGGGAAGCATTTGCTAGGTTCTGTGCCAGAGTTCCCTAACCATTTTCTTACAGGAAGTGGAGGAGTCATTCACTTTCTGGGGTACTCCAGAGGTGATCTGGTTCATCCTGCTGATTGCATGCAGCAGTTACTGGAGAAAGTTAGGCGGCATAGAGTCAATGTTGATGGCAATGTTTGTACTGTCATGGGATGGCAGAGGAAACTTGATCCAGCATGCAATGTGATGCATACCTTGCAAACTCTGCTTCTCAAGGCTGACTGGGCAAAGTCCCTTTCATACACAATCGAGGGGCTAATGGCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

283

Amino Acids

32.22

Weight (kDa)

8.78

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 4 - 152 6.6e-23 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AatII GACGTC 1 cut(s) 78
AciI CCGC 2 cut(s) 43, 691
AclWI GGATC 3 cut(s) 509, 522, 746
AcsI RAATTY 2 cut(s) 400, 410
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 434
AfaI GTAC 2 cut(s) 629, 724
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 4 cut(s) 176, 331, 410, 418
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 2 cut(s) 240, 274
AluBI AGCT 2 cut(s) 29, 503
AluI AGCT 2 cut(s) 29, 503
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 3 cut(s) 9, 82, 157
Alw44I GTGCAC 1 cut(s) 457
AlwI GGATC 3 cut(s) 509, 522, 746
AlwNI CAGNNNCTG 2 cut(s) 206, 676
ApaLI GTGCAC 1 cut(s) 457
ApeKI GCWGC 3 cut(s) 29, 449, 667
ApoI RAATTY 2 cut(s) 400, 410
AspLEI GCGC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 650
BaeGI GKGCMC 1 cut(s) 461
BamHI GGATCC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 3 cut(s) 16, 436, 679
BccI CCATC 3 cut(s) 60, 704, 729
BciT130I CCWGG 2 cut(s) 242, 276
BciVI GTATCC 1 cut(s) 108
BcoDI GTCTC 3 cut(s) 9, 82, 157
BfaI CTAG 2 cut(s) 384, 560
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 5 cut(s) 30, 43, 450, 668, 692
BlsI GCNGC 5 cut(s) 31, 44, 451, 669, 693
Bme1390I CCNGG 2 cut(s) 242, 276
BmgBI CACGTC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 516, 846
BmrFI CCNGG 2 cut(s) 242, 276
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 4 cut(s) 118, 225, 280, 759
BmuI ACTGGG 1 cut(s) 814
BpmI CTGGAG 2 cut(s) 616, 698
BpuEI CTTGAG 1 cut(s) 779
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 681, 809
Bse3DI GCAATG 2 cut(s) 721, 769
BseBI CCWGG 2 cut(s) 242, 276
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 4 cut(s) 109, 271, 649, 740
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 2 cut(s) 721, 769
BseMII CTCAG 2 cut(s) 314, 444
BseNI ACTGG 2 cut(s) 681, 809
BseRI GAGGAG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 3 cut(s) 16, 436, 679
BsiHKAI GWGCWC 1 cut(s) 461
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 3 cut(s) 9, 82, 157
BsmBI CGTCTC 2 cut(s) 82, 157
BsmFI GGGAC 1 cut(s) 799
BsmI GAATGC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 4 cut(s) 169, 514, 640, 751
BspACI CCGC 2 cut(s) 43, 691
BspCNI CTCAG 2 cut(s) 313, 445
BspLI GGNNCC 2 cut(s) 516, 846
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 3 cut(s) 509, 522, 746
BsrDI GCAATG 2 cut(s) 721, 769
BsrI ACTGG 2 cut(s) 681, 809
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 4 cut(s) 169, 514, 640, 751
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 242, 276
Bst4CI ACNGT 2 cut(s) 327, 727
BstACI GRCGYC 1 cut(s) 75
BstAPI GCANNNNNTGC 2 cut(s) 778, 787
BstC8I GCNNGC 2 cut(s) 665, 760
BstDEI CTNAG 5 cut(s) 121, 300, 453, 464, 474
BstF5I GGATG 4 cut(s) 109, 271, 649, 740
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 4 cut(s) 172, 517, 643, 754
BstMAI GTCTC 3 cut(s) 9, 82, 157
BstMBI GATC 4 cut(s) 169, 514, 640, 751
BstMWI GCNNNNNNNGC 4 cut(s) 26, 778, 787, 806
BstNI CCWGG 2 cut(s) 242, 276
BstNSI RCATGY 5 cut(s) 224, 263, 271, 667, 762
BstSCI CCNGG 2 cut(s) 240, 274
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 461
BstV1I GCAGC 3 cut(s) 16, 436, 679
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuI GTATCC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 4 cut(s) 109, 271, 649, 740
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 665, 760
CaiI CAGNNNCTG 2 cut(s) 206, 676
CfoI GCGC 1 cut(s) 444
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 628, 723
CviAII CATG 9 cut(s) 182, 221, 260, 268, 344, 367, 664, 730, 759
CviQI GTAC 2 cut(s) 628, 723
DdeI CTNAG 5 cut(s) 121, 300, 453, 464, 474
DpnI GATC 4 cut(s) 171, 516, 642, 753
DpnII GATC 4 cut(s) 169, 514, 640, 751
DraIII CACNNNGTG 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 240, 274
EcoT22I ATGCAT 2 cut(s) 273, 774
Esp3I CGTCTC 2 cut(s) 82, 157
FaeI CATG 9 cut(s) 185, 224, 263, 271, 347, 370, 667, 733, 762
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 1 cut(s) 799
FatI CATG 9 cut(s) 181, 220, 259, 267, 343, 366, 663, 729, 758
Fnu4HI GCNGC 5 cut(s) 30, 43, 450, 668, 692
FokI GGATG 4 cut(s) 96, 258, 636, 747
Fsp4HI GCNGC 5 cut(s) 30, 43, 450, 668, 692
FspBI CTAG 2 cut(s) 384, 560
GlaI GCGC 1 cut(s) 443
GluI GCNGC 5 cut(s) 30, 43, 450, 668, 692
GsuI CTGGAG 2 cut(s) 616, 698
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 444
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 9 cut(s) 185, 224, 263, 271, 347, 370, 667, 733, 762
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 3 cut(s) 468, 609, 699
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 3 cut(s) 13, 247, 459
Hpy188I TCNGA 3 cut(s) 231, 303, 318
Hpy188III TCNNGA 3 cut(s) 384, 434, 633
Hpy8I GTNNAC 3 cut(s) 13, 247, 459
Hpy99I CGWCG 1 cut(s) 435
HpyAV CCTTC 2 cut(s) 64, 321
HpyCH4III ACNGT 2 cut(s) 327, 727
HpyCH4IV ACGT 3 cut(s) 75, 131, 430
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 778, 787, 806
HpyF3I CTNAG 5 cut(s) 121, 300, 453, 464, 474
HpySE526I ACGT 3 cut(s) 75, 131, 430
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 9 cut(s) 185, 224, 263, 271, 347, 370, 667, 733, 762
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 4 cut(s) 169, 514, 640, 751
LmnI GCTCC 2 cut(s) 243, 850
Lsp1109I GCAGC 3 cut(s) 16, 436, 679
LweI GCATC 4 cut(s) 118, 225, 280, 759
MaeI CTAG 2 cut(s) 384, 560
MaeII ACGT 3 cut(s) 75, 131, 430
MaeIII GTNAC 2 cut(s) 389, 672
MalI GATC 4 cut(s) 171, 516, 642, 753
MboI GATC 4 cut(s) 169, 514, 640, 751
MboII GAAGA 2 cut(s) 164, 244
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 5 cut(s) 34, 55, 400, 410, 484
MlyI GAGTC 3 cut(s) 462, 618, 708
MnlI CCTC 6 cut(s) 351, 505, 599, 629, 735, 826
Mph1103I ATGCAT 2 cut(s) 273, 774
MseI TTAA 2 cut(s) 192, 850
MspR9I CCNGG 2 cut(s) 242, 276
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 2 cut(s) 242, 276
MwoI GCNNNNNNNGC 4 cut(s) 26, 778, 787, 806
NdeII GATC 4 cut(s) 169, 514, 640, 751
NlaIII CATG 9 cut(s) 185, 224, 263, 271, 347, 370, 667, 733, 762
NlaIV GGNNCC 2 cut(s) 516, 846
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 2 cut(s) 273, 774
NspI RCATGY 5 cut(s) 224, 263, 271, 667, 762
PaeI GCATGC 2 cut(s) 667, 762
PctI GAATGC 1 cut(s) 152
PkrI GCNGC 5 cut(s) 31, 44, 451, 669, 693
PleI GAGTC 3 cut(s) 462, 617, 707
PpsI GAGTC 3 cut(s) 462, 617, 707
PsiI TTATAA 1 cut(s) 54
Psp6I CCWGG 2 cut(s) 240, 274
PspGI CCWGG 2 cut(s) 240, 274
PspN4I GGNNCC 2 cut(s) 516, 846
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 2 cut(s) 206, 676
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 2 cut(s) 629, 724
RsaNI GTAC 2 cut(s) 628, 723
SaqAI TTAA 2 cut(s) 192, 850
SatI GCNGC 5 cut(s) 30, 43, 450, 668, 692
Sau3AI GATC 4 cut(s) 169, 514, 640, 751
SchI GAGTC 3 cut(s) 462, 618, 708
ScrFI CCNGG 2 cut(s) 242, 276
SduI GDGCHC 1 cut(s) 461
SetI ASST 9 cut(s) 18, 31, 78, 134, 433, 505, 565, 640, 779
SfaNI GCATC 4 cut(s) 118, 225, 280, 759
SfcI CTRYAG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 6, 794
SmoI CTYRAG 2 cut(s) 6, 794
SphI GCATGC 2 cut(s) 667, 762
Sse9I AATT 5 cut(s) 34, 55, 400, 410, 484
SsiI CCGC 2 cut(s) 43, 691
SspI AATATT 1 cut(s) 522
SspMI CTAG 2 cut(s) 384, 560
StyD4I CCNGG 2 cut(s) 240, 274
TaaI ACNGT 2 cut(s) 327, 727
TaiI ACGT 3 cut(s) 78, 134, 433
TaqI TCGA 1 cut(s) 831
TasI AATT 5 cut(s) 34, 55, 400, 410, 484
TatI WGTACW 1 cut(s) 722
TauI GCSGC 2 cut(s) 45, 694
Tru1I TTAA 2 cut(s) 192, 850
Tru9I TTAA 2 cut(s) 192, 850
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 3 cut(s) 29, 449, 667
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 5 cut(s) 198, 496, 555, 638, 810
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 451
VneI GTGCAC 1 cut(s) 457
XapI RAATTY 2 cut(s) 400, 410
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 5 cut(s) 224, 263, 271, 667, 762
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XspI CTAG 2 cut(s) 384, 560
ZraI GACGTC 1 cut(s) 76
Zsp2I ATGCAT 2 cut(s) 273, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.