FvH4_3g21150

ABC1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000876
Physical Location & Seq
Forward (+)
14172675 .. 14178610
5936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21150.t3

Sequence Viewer

Length: 1749 bp
ATGTCCAGATTTTTGGCATATGGAAATGTAAGGAGGGTTGCACAGGAAGTTACAAGTAACAGGGCAGATAACACAGTTGAAGCTCCTTACAGGCTTTGCCGGTTATTTTTGAGACATAAACATACTTTAAGAGGGCAATCCCCGTTTCTGCTACATAGAGCAAAAGATAAGATTTTGAATGGTGGTGGTTATAGGAATTTATATAGCATATCCGCAGGGAGTACAGCTTCTCAGCATGCCCAAATTGCCTGGAGAAAGCTTTCTCATTTATATTTCTATCGGGAAACAGCCTTCATGCCAATAGGTCGAATTGCCCGTGCTTTCAGCTTGGCTTTGACCCGCTCAAATTTAGTGGCTCCTGGTATTTTTTCCTTTCTAGTTGGAGAGTTTGTTTGGGGGCAGCGTACAGGTGTAGAAGCAGAAGGCCTCCCAACAAAGGAGTCTTTATATATTCATGCCCAAGATGGACATATCTATTTGGCCTTATTTTTGGTTTCACTTCTGGAGTGTGTTATCTTGTTTGTCAGAGCAATTTATCTAGCAGTTTTGTTCTCACCGTGTATAGCCATGACACTTTTTAAGGATGTCTTTGGCACCCAGTTTAGGAAAAAATGGCTTCATGTTGTTCGTCAAACACTGGAAAAAGCAGGCCCAGCATTTATAAAATGGGGTCAATGGGCTGCTGCAAGGCCAGATATCTTCCCAAGAGATTTGTGTGCTGAACTTGAGAAACTCCATAGTAAAGCTCCAGCACATAGTTTTGACTTTACCAAATGTAGTATTGAAAAGGCATTTGGTCGCAAGCTGCCTGAAATATTTGAAAAATTTGATGAGGAACCTGTGGCGTCAGGAAGTGTTGCTCAAGTTCATCAAGCTATACTCAAGTATGGATACCCAGGTCAGAAGATCAAGCCCATTTTAGTTGCTGTTAAGGTTAGACATCCAGGTGTTGGTGATGCAATTAGGAGGGATTTTATGATAATCAATTGTGTAGCCAAAATTTCAAGGTTCATCCCTTCTTTGAAATTGTGGAGATTGGATGAAAGCCTACAGCAATTTGCCGTTTATATGATGTCACAAGTTGATCTGTCAAGGGAAGCCGCACATCTCAGTCGTTTTAGCTATAATTTTCGAAATTCAAAAGATGTCTCATTTCCAAGACCTCTATACCCCCTGGTGCACCCATCTGTTTTAGTTGAAACGTACGAGCACGGTGAAAGTGTTCAGCACTACGTCGATGAACTTGAAGGCAATGAACCAATAAGAAATGCCCTTGCTCACATCGGAACCAATGCACTACTGAAGATGCTTCTGGTAGATAATTTTATTCATGCTGACATGCATCCTGGAAATATTCTTGTCAGAGTAACTCGTAGCAAGGCTGTGGCCCTTCATGATGGTCGAAGTGTTGCAGAGTGCACACTTAGATTATCTGGACAGCAAAACTGCCCAAATCCAAGTGCTTTTATTGAGGAAGTGGATAAATCTTTCGAATTATGGGACTCCCCAGAAGGTGAAATCATGCATCCAGGAGACTGCATCCAGCAATTGCTTGAGCAAGTTAGGCGGCACAAAGTCAGAATAGATGGCAATGTTTGCACAGTGATTGTAACCACTTTGGTTCTTGAGGGGTGGCAGCGGAAACTTGATCCAGGATATGACATGATGCACACATTACAGACCTTGCTTTTTAAGGCGGACTGGGCAGAGTCTTTTTCTTACACCATTGAAGGACTCATTGCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

583

Amino Acids

66.03

Weight (kDa)

9.05

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 244 - 509 1.6e-46 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 950
AccBSI CCGCTC 1 cut(s) 342
AciI CCGC 6 cut(s) 213, 340, 1101, 1567, 1639, 1697
AclWI GGATC 1 cut(s) 1643
AcsI RAATTY 5 cut(s) 196, 346, 824, 999, 1135
AcuI CTGAAG 1 cut(s) 1322
AcyI GRCGYC 1 cut(s) 845
AfaI GTAC 3 cut(s) 223, 406, 1205
AfiI CCNNNNNNNGG 3 cut(s) 436, 603, 950
AjnI CCWGG 8 cut(s) 248, 358, 895, 943, 1173, 1345, 1528, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AluBI AGCT 8 cut(s) 83, 227, 259, 327, 746, 805, 875, 1122
AluI AGCT 8 cut(s) 83, 227, 259, 327, 746, 805, 875, 1122
Alw21I GWGCWC 3 cut(s) 1182, 1212, 1421
Alw26I GTCTC 3 cut(s) 106, 1153, 1527
Alw44I GTGCAC 2 cut(s) 1178, 1417
AlwI GGATC 1 cut(s) 1643
AoxI GGCC 5 cut(s) 424, 480, 649, 689, 1386
ApaLI GTGCAC 2 cut(s) 1178, 1417
ApeKI GCWGC 5 cut(s) 400, 680, 683, 805, 1636
ApoI RAATTY 5 cut(s) 196, 346, 824, 999, 1135
Asp700I GAANNNNTTC 2 cut(s) 259, 1221
AspS9I GGNCC 2 cut(s) 650, 1387
AsuHPI GGTGA 4 cut(s) 546, 965, 1226, 1526
AsuII TTCGAA 2 cut(s) 1132, 1491
BaeGI GKGCMC 2 cut(s) 1182, 1421
BaeI ACNNNNGTAYC 2 cut(s) 883, 916
BanI GGYRCC 1 cut(s) 593
Bbv12I GWGCWC 3 cut(s) 1182, 1212, 1421
BbvI GCAGC 5 cut(s) 412, 667, 670, 792, 1648
BccI CCATC 4 cut(s) 458, 1192, 1391, 1580
BceAI ACGGC 1 cut(s) 1046
BciT130I CCWGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
BciVI GTATCC 1 cut(s) 884
BcoDI GTCTC 3 cut(s) 106, 1153, 1527
BfaI CTAG 2 cut(s) 377, 539
BfmI CTRYAG 1 cut(s) 1049
BfuI GTATCC 1 cut(s) 884
BisI GCNGC 7 cut(s) 401, 681, 684, 806, 1101, 1568, 1637
BlsI GCNGC 7 cut(s) 402, 682, 685, 807, 1102, 1569, 1638
Bme1390I CCNGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
BmgT120I GGNCC 2 cut(s) 650, 1387
BmiI GGNNCC 4 cut(s) 357, 595, 837, 1288
BmrFI CCNGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
BmrI ACTGGG 2 cut(s) 592, 1711
BmsI GCATC 6 cut(s) 946, 1296, 1351, 1534, 1548, 1656
BmuI ACTGGG 2 cut(s) 592, 1711
BpmI CTGGAG 3 cut(s) 271, 524, 732
Bpu14I TTCGAA 2 cut(s) 1132, 1491
BpuEI CTTGAG 5 cut(s) 746, 846, 866, 1574, 1646
BsaHI GRCGYC 1 cut(s) 845
BsaJI CCNNGG 2 cut(s) 895, 1173
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 603, 950
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 3 cut(s) 598, 642, 1706
Bse3DI GCAATG 3 cut(s) 1258, 1597, 1737
BseBI CCWGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
BseDI CCNNGG 2 cut(s) 895, 1173
BseGI GGATG 7 cut(s) 589, 940, 1011, 1045, 1342, 1525, 1539
BseLI CCNNNNNNNGG 3 cut(s) 436, 603, 950
BseMI GCAATG 3 cut(s) 1258, 1597, 1737
BseMII CTCAG 2 cut(s) 245, 1123
BseNI ACTGG 3 cut(s) 598, 642, 1706
BseSI GKGCMC 2 cut(s) 1182, 1421
BseXI GCAGC 5 cut(s) 412, 667, 670, 792, 1648
BseYI CCCAGC 1 cut(s) 652
BshFI GGCC 5 cut(s) 426, 482, 651, 691, 1388
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 3 cut(s) 1182, 1212, 1421
BsiSI CCGG 1 cut(s) 100
BsiWI CGTACG 1 cut(s) 1203
BslFI GGGAC 1 cut(s) 1514
BslI CCNNNNNNNGG 3 cut(s) 436, 603, 950
BsmAI GTCTC 3 cut(s) 106, 1153, 1527
BsmFI GGGAC 1 cut(s) 1514
BsnI GGCC 5 cut(s) 426, 482, 651, 691, 1388
Bsp119I TTCGAA 2 cut(s) 1132, 1491
Bsp1286I GDGCHC 3 cut(s) 1182, 1212, 1421
Bsp143I GATC 3 cut(s) 906, 1084, 1648
BspACI CCGC 6 cut(s) 213, 340, 1101, 1567, 1639, 1697
BspANI GGCC 5 cut(s) 426, 482, 651, 691, 1388
BspCNI CTCAG 2 cut(s) 244, 1122
BspHI TCATGA 1 cut(s) 1393
BspLI GGNNCC 4 cut(s) 357, 595, 837, 1288
BspPI GGATC 1 cut(s) 1643
BspT104I TTCGAA 2 cut(s) 1132, 1491
BspT107I GGYRCC 1 cut(s) 593
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 3 cut(s) 1258, 1597, 1737
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 3 cut(s) 598, 642, 1706
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 895, 1173
BssMI GATC 3 cut(s) 906, 1084, 1648
BssNI GRCGYC 1 cut(s) 845
Bst2UI CCWGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
Bst4CI ACNGT 4 cut(s) 76, 558, 1214, 1603
BstACI GRCGYC 1 cut(s) 845
BstAPI GCANNNNNTGC 1 cut(s) 1596
BstBI TTCGAA 2 cut(s) 1132, 1491
BstC8I GCNNGC 3 cut(s) 237, 649, 803
BstDEI CTNAG 3 cut(s) 231, 1109, 1424
BstF5I GGATG 7 cut(s) 589, 940, 1011, 1045, 1342, 1525, 1539
BstKTI GATC 3 cut(s) 909, 1087, 1651
BstMAI GTCTC 3 cut(s) 106, 1153, 1527
BstMBI GATC 3 cut(s) 906, 1084, 1648
BstMWI GCNNNNNNNGC 5 cut(s) 245, 653, 1564, 1596, 1703
BstNI CCWGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
BstNSI RCATGY 2 cut(s) 239, 1342
BstSCI CCNGG 8 cut(s) 248, 358, 895, 943, 1173, 1345, 1528, 1651
BstSFI CTRYAG 1 cut(s) 1049
BstSLI GKGCMC 2 cut(s) 1182, 1421
BstV1I GCAGC 5 cut(s) 412, 667, 670, 792, 1648
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuI GTATCC 1 cut(s) 884
BsuRI GGCC 5 cut(s) 426, 482, 651, 691, 1388
BtsCI GGATG 7 cut(s) 589, 940, 1011, 1045, 1342, 1525, 1539
BtsIMutI CAGTG 2 cut(s) 635, 1608
Cac8I GCNNGC 3 cut(s) 237, 649, 803
CciI TCATGA 1 cut(s) 1393
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 650, 1387
CseI GACGC 1 cut(s) 834
Csp6I GTAC 3 cut(s) 222, 405, 1204
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviQI GTAC 3 cut(s) 222, 405, 1204
DdeI CTNAG 3 cut(s) 231, 1109, 1424
DpnI GATC 3 cut(s) 908, 1086, 1650
DpnII GATC 3 cut(s) 906, 1084, 1648
EciI GGCGGA 1 cut(s) 1712
Eco147I AGGCCT 1 cut(s) 426
Eco32I GATATC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 1322
EcoRII CCWGG 8 cut(s) 248, 358, 895, 943, 1173, 1345, 1528, 1651
EcoRV GATATC 1 cut(s) 697
EcoT22I ATGCAT 2 cut(s) 1344, 1527
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 1 cut(s) 1514
FauI CCCGC 1 cut(s) 347
FauNDI CATATG 1 cut(s) 19
Fnu4HI GCNGC 7 cut(s) 401, 681, 684, 806, 1101, 1568, 1637
FokI GGATG 7 cut(s) 596, 927, 998, 1052, 1329, 1512, 1526
Fsp4HI GCNGC 7 cut(s) 401, 681, 684, 806, 1101, 1568, 1637
FspBI CTAG 2 cut(s) 377, 539
GluI GCNGC 7 cut(s) 401, 681, 684, 806, 1101, 1568, 1637
GsaI CCCAGC 1 cut(s) 656
GsuI CTGGAG 3 cut(s) 271, 524, 732
HaeIII GGCC 5 cut(s) 426, 482, 651, 691, 1388
HapII CCGG 1 cut(s) 100
HgaI GACGC 1 cut(s) 834
Hin1I GRCGYC 1 cut(s) 845
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 4 cut(s) 440, 1502, 1709, 1734
HpaII CCGG 1 cut(s) 100
HphI GGTGA 4 cut(s) 546, 965, 1226, 1526
Hpy166II GTNNAC 2 cut(s) 1180, 1419
Hpy188I TCNGA 5 cut(s) 527, 903, 1286, 1364, 1580
Hpy188III TCNNGA 7 cut(s) 6, 281, 503, 849, 1394, 1434, 1625
Hpy8I GTNNAC 2 cut(s) 1180, 1419
Hpy99I CGWCG 1 cut(s) 1238
HpyAV CCTTC 7 cut(s) 301, 416, 1026, 1241, 1400, 1505, 1724
HpyCH4III ACNGT 4 cut(s) 76, 558, 1214, 1603
HpyCH4IV ACGT 2 cut(s) 1202, 1233
HpyF10VI GCNNNNNNNGC 5 cut(s) 245, 653, 1564, 1596, 1703
HpyF3I CTNAG 3 cut(s) 231, 1109, 1424
HpySE526I ACGT 2 cut(s) 1202, 1233
Hsp92I GRCGYC 1 cut(s) 845
Kzo9I GATC 3 cut(s) 906, 1084, 1648
LmnI GCTCC 3 cut(s) 88, 361, 751
Lsp1109I GCAGC 5 cut(s) 412, 667, 670, 792, 1648
LweI GCATC 6 cut(s) 946, 1296, 1351, 1534, 1548, 1656
MaeI CTAG 2 cut(s) 377, 539
MaeII ACGT 2 cut(s) 1202, 1233
MaeIII GTNAC 5 cut(s) 49, 56, 1074, 1366, 1609
MalI GATC 3 cut(s) 908, 1086, 1650
MbiI CCGCTC 1 cut(s) 342
MboI GATC 3 cut(s) 906, 1084, 1648
MboII GAAGA 3 cut(s) 691, 916, 1315
MfeI CAATTG 2 cut(s) 985, 1547
MhlI GDGCHC 3 cut(s) 1182, 1212, 1421
MlyI GAGTC 4 cut(s) 449, 1496, 1718, 1728
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 8 cut(s) 27, 125, 437, 826, 960, 1173, 1465, 1621
Mph1103I ATGCAT 2 cut(s) 1344, 1527
MroXI GAANNNNTTC 2 cut(s) 259, 1221
MseI TTAA 5 cut(s) 128, 579, 930, 1692, 1747
MslI CAYNNNNRTG 1 cut(s) 945
MspA1I CMGCKG 1 cut(s) 1639
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
MunI CAATTG 2 cut(s) 985, 1547
MvaI CCWGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
MwoI GCNNNNNNNGC 5 cut(s) 245, 653, 1564, 1596, 1703
NdeI CATATG 1 cut(s) 19
NdeII GATC 3 cut(s) 906, 1084, 1648
NlaIV GGNNCC 4 cut(s) 357, 595, 837, 1288
NmuCI GTSAC 1 cut(s) 1074
NsiI ATGCAT 2 cut(s) 1344, 1527
NspI RCATGY 2 cut(s) 239, 1342
NspV TTCGAA 2 cut(s) 1132, 1491
PaeI GCATGC 1 cut(s) 239
PagI TCATGA 1 cut(s) 1393
PceI AGGCCT 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PdmI GAANNNNTTC 2 cut(s) 259, 1221
Pfl23II CGTACG 1 cut(s) 1203
PflMI CCANNNNNTGG 1 cut(s) 950
PfoI TCCNGGA 3 cut(s) 1345, 1528, 1651
PkrI GCNGC 7 cut(s) 402, 682, 685, 807, 1102, 1569, 1638
PleI GAGTC 4 cut(s) 448, 1496, 1717, 1728
PpsI GAGTC 4 cut(s) 448, 1496, 1717, 1728
PsiI TTATAA 1 cut(s) 662
Psp6I CCWGG 8 cut(s) 248, 358, 895, 943, 1173, 1345, 1528, 1651
PspFI CCCAGC 1 cut(s) 652
PspGI CCWGG 8 cut(s) 248, 358, 895, 943, 1173, 1345, 1528, 1651
PspLI CGTACG 1 cut(s) 1203
PspN4I GGNNCC 4 cut(s) 357, 595, 837, 1288
PspPI GGNCC 2 cut(s) 650, 1387
RsaI GTAC 3 cut(s) 223, 406, 1205
RsaNI GTAC 3 cut(s) 222, 405, 1204
RseI CAYNNNNRTG 1 cut(s) 945
SaqAI TTAA 5 cut(s) 128, 579, 930, 1692, 1747
SatI GCNGC 7 cut(s) 401, 681, 684, 806, 1101, 1568, 1637
Sau3AI GATC 3 cut(s) 906, 1084, 1648
Sau96I GGNCC 2 cut(s) 650, 1387
SchI GAGTC 4 cut(s) 449, 1496, 1718, 1728
ScrFI CCNGG 8 cut(s) 250, 360, 897, 945, 1175, 1347, 1530, 1653
SduI GDGCHC 3 cut(s) 1182, 1212, 1421
SfaNI GCATC 6 cut(s) 946, 1296, 1351, 1534, 1548, 1656
SfcI CTRYAG 1 cut(s) 1049
SfuI TTCGAA 2 cut(s) 1132, 1491
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 5 cut(s) 725, 861, 881, 1553, 1625
SmoI CTYRAG 5 cut(s) 725, 861, 881, 1553, 1625
SphI GCATGC 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 6 cut(s) 213, 340, 1101, 1567, 1639, 1697
SspI AATATT 2 cut(s) 816, 1354
SspMI CTAG 2 cut(s) 377, 539
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 8 cut(s) 248, 358, 895, 943, 1173, 1345, 1528, 1651
TaaI ACNGT 4 cut(s) 76, 558, 1214, 1603
TaiI ACGT 2 cut(s) 1205, 1236
TaqI TCGA 5 cut(s) 307, 1132, 1236, 1402, 1491
TatI WGTACW 1 cut(s) 221
TauI GCSGC 2 cut(s) 1103, 1570
Tru1I TTAA 5 cut(s) 128, 579, 930, 1692, 1747
Tru9I TTAA 5 cut(s) 128, 579, 930, 1692, 1747
TscAI CASTG 2 cut(s) 642, 1608
TseFI GTSAC 1 cut(s) 1074
TseI GCWGC 5 cut(s) 400, 680, 683, 805, 1636
Tsp45I GTSAC 1 cut(s) 1074
TspRI CASTG 2 cut(s) 642, 1608
Van91I CCANNNNNTGG 1 cut(s) 950
VneI GTGCAC 2 cut(s) 1178, 1417
XapI RAATTY 5 cut(s) 196, 346, 824, 999, 1135
XceI RCATGY 2 cut(s) 239, 1342
XmnI GAANNNNTTC 2 cut(s) 259, 1221
XspI CTAG 2 cut(s) 377, 539
Zsp2I ATGCAT 2 cut(s) 1344, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.