Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001259.1

Orthogroup ID

OG0000876

Physical Location & Seq

Genomic Coordinates Forward (+)

59637 .. 62343

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001259.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atggaccagtcgcagaataccatatacatgcgtgctcaagatggacatgcttttatcacatcattactattgtcggctttagaaggtgtgatattgttactgagagcactctatctggggattttgttctcaccctgtatagtgatgatgcctttcgtcgcttactgtggacctgagtttaggagattgtggcttcatgttgttcatcgtactttggaaaaagcaggtccagctttcatcaaatggggtcagtgggctgctacacggcctgatcttttccccagagacttatgcatcaagctttcagagcttcacatgaaagctcctgaacatagctttgcctacacaaagaaaactatcgaaggtgcatttggacgcaagctctctgagatttttgagaactttgaagaggagccagtagcatctggtagtattgctcaagtgcatcgagctactttgagatttcgatacccaaaccaagaggtgaagcccatggtagttgccgtaaaggtcagacatcctggtgttagtgaatcaattaggagagattttgtgattatcaattcagttgcaaaattgtcaatgttcattcctactttaaagtggtggagattagatgaaagcgtacagcagttctcagttttcatgatgtctcaagttgatcttgcaagggaagctgcccatttgagccgttttatctataatttccgtcatcataaggatgtctcttttccaaagcctttgtatccacttgtgcatcctgctgttttggtggaaacttatgagcaaggggaatgtgtctcaaactatcttcatgagcttcccgggcaagatcagattaaagctgcagttgctcacagtggaacaaaggcatatttaaagatgcttctggtggacaactatatacatgcggacatgcatcctggaaatatccttgtccgggtgcctcagagcaactctttttggaagaaactcttcaagttaaagcctcatgtcatttttcttgatgtaggcatgactgctgaactctctagaactgaccaagtaaatttagttggacttttcaaggctatcgctcgtcatgatggaggcactgccgctgagtgcacgctcagactatctaatcaacagaaatgcccaaatccggaagctttcattgaggaaatgaaggaggccttcacttattggggtagtccagaaggtgatctgatccatcctgctgagtgcatgcatcaggtactggagaaagttaggcgtcatagagtcaatgttgatggaaatgtctgcactgtcatggtaacaactttggttcttgagggatggcagaggaaacttgatcctgcatacaatgtgatgaaaacattgcaaatgtacgctggttatcaaaactcaaaacttgaatgggcagagtccctctcctacactattcaggcgctaatggctccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

482

Amino Acids

55.06

Weight (kDa)

8.62

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11390 AT1G61640 AT1G61640 AT1G61640
fragaria_vesca	FvH4_3g03770 FvH4_3g03770 FvH4_3g03770 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_3g21150 FvH4_4g00400 FvH4_4g00400 FvH4_4g00400
malus_domestica	MD05G1326600.v1.1 MD10G1304700.v1.1 MD11G1235000.v1.1
prunus_persica	Prupe.4G034900_v2.0.a1 Prupe.4G034900_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1 Prupe.4G192100_v2.0.a1
pyrus_communis	pycom10g25710 pycom11g20660
rosa_chinensis	RchiOBHm_Chr4g0385351 RchiOBHm_Chr5g0005981 RchiOBHm_Chr5g0036231
rosa_laevigata	RLG00000010235 RLG00000031339 RLG00000031351 RLG00000031384 RLG00000031390 RLG00000033680
rosa_multiflora	Rmu_co8474727.1_g000001 Rmu_sc0000247.1_g000006 Rmu_sc0001259.1_g000007 Rmu_sc0002694.1_g000006
rosa_roxburghii	Rroxscaffold_1G00044550 Rroxscaffold_1G00069980 Rroxscaffold_1G00070010 Rroxscaffold_5G00333280
rosa_rugosa	Rorug03G0300500 Rorug04G0419000 Rorug04G0419100 Rorug05G0154200
rosa_samantha	Rh4AG004300 Rh4BG003700 Rh4CG005400 Rh4DG003900 Rh5AG046400 Rh5AG247900 Rh5BG045300 Rh5BG248500 Rh5CG054000 Rh5CG279800 Rh5DG044900 Rh5DG256800
rosa_wichuraiana	Rw4G000440 Rw4G000470 Rw5G004670 Rw5G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	943
AccIII	TCCGGA	1 cut(s)	1144
AciI	CCGC	2 cut(s)	911, 1098
AclWI	GGATC	2 cut(s)	1204, 1331
AcsI	RAATTY	1 cut(s)	1048
AcyI	GRCGYC	1 cut(s)	1255
AfaI	GTAC	4 cut(s)	211, 627, 1239, 1373
AfiI	CCNNNNNNNGG	2 cut(s)	940, 1144
AgsI	TTSAA	4 cut(s)	407, 979, 1066, 1400
AjnI	CCWGG	2 cut(s)	520, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
Alw21I	GWGCWC	3 cut(s)	37, 109, 1109
Alw26I	GTCTC	4 cut(s)	279, 657, 730, 805
Alw44I	GTGCAC	1 cut(s)	1105
AlwI	GGATC	2 cut(s)	1204, 1331
AlwNI	CAGNNNCTG	1 cut(s)	1240
Ama87I	CYCGRG	1 cut(s)	824
Aor13HI	TCCGGA	1 cut(s)	1144
AoxI	GGCC	2 cut(s)	266, 1173
ApaLI	GTGCAC	1 cut(s)	1105
ApeKI	GCWGC	3 cut(s)	257, 677, 845
ApoI	RAATTY	1 cut(s)	1048
Asp700I	GAANNNNTTC	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	1435
AspS9I	GGNCC	3 cut(s)	4, 170, 227
AsuC2I	CCSGG	3 cut(s)	825, 826, 941
AsuHPI	GGTGA	3 cut(s)	123, 496, 1214
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	3 cut(s)	4, 170, 227
BaeGI	GKGCMC	1 cut(s)	1109
BanI	GGYRCC	1 cut(s)	943
Bbv12I	GWGCWC	3 cut(s)	37, 109, 1109
BbvI	GCAGC	3 cut(s)	244, 664, 832
BccI	CCATC	5 cut(s)	35, 1079, 1221, 1268, 1314
BceAI	ACGGC	3 cut(s)	281, 488, 675
BciT130I	CCWGG	2 cut(s)	522, 924
BciVI	GTATCC	1 cut(s)	756
BcnI	CCSGG	3 cut(s)	825, 826, 941
BcoDI	GTCTC	4 cut(s)	279, 657, 730, 805
BfaI	CTAG	1 cut(s)	1032
BfmI	CTRYAG	1 cut(s)	846
BfoI	RGCGCY	1 cut(s)	1436
BfuAI	ACCTGC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	756
BisI	GCNGC	4 cut(s)	258, 678, 846, 1098
BlsI	GCNGC	4 cut(s)	259, 679, 847, 1099
Bme1390I	CCNGG	5 cut(s)	522, 825, 826, 924, 941
Bme18I	GGWCC	3 cut(s)	4, 170, 227
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	3 cut(s)	4, 170, 227
BmiI	GGNNCC	3 cut(s)	414, 945, 1443
BmrFI	CCNGG	5 cut(s)	522, 825, 826, 924, 941
BmsI	GCATC	8 cut(s)	138, 303, 431, 454, 766, 873, 928, 1240
BplI	GAGNNNNNCTC	2 cut(s)	1400, 1432
BpmI	CTGGAG	1 cut(s)	1262
BpuEI	CTTGAG	4 cut(s)	21, 423, 639, 1334
BpuMI	CCSGG	3 cut(s)	825, 826, 941
BsaHI	GRCGYC	1 cut(s)	1255
BsaJI	CCNNGG	2 cut(s)	492, 824
BsaWI	WCCGGW	1 cut(s)	1144
Bsc4I	CCNNNNNNNGG	2 cut(s)	940, 1144
Bse1I	ACTGG	3 cut(s)	7, 416, 1245
Bse3DI	GCAATG	1 cut(s)	1361
BseAI	TCCGGA	1 cut(s)	1144
BseBI	CCWGG	2 cut(s)	522, 924
BseDI	CCNNGG	2 cut(s)	492, 824
BseGI	GGATG	6 cut(s)	517, 727, 757, 919, 1213, 1325
BseLI	CCNNNNNNNGG	2 cut(s)	940, 1144
BseMI	GCAATG	1 cut(s)	1361
BseMII	CTCAG	8 cut(s)	92, 165, 378, 651, 962, 1092, 1126, 1212
BseNI	ACTGG	3 cut(s)	7, 416, 1245
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	1109
BseXI	GCAGC	3 cut(s)	244, 664, 832
BsgI	GTGCAG	1 cut(s)	1270
BshFI	GGCC	2 cut(s)	268, 1175
BshNI	GGYRCC	1 cut(s)	943
BsiHKAI	GWGCWC	3 cut(s)	37, 109, 1109
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	3 cut(s)	825, 940, 1145
BslFI	GGGAC	1 cut(s)	1396
BslI	CCNNNNNNNGG	2 cut(s)	940, 1144
BsmAI	GTCTC	4 cut(s)	279, 657, 730, 805
BsmFI	GGGAC	1 cut(s)	1396
BsnI	GGCC	2 cut(s)	268, 1175
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	3 cut(s)	37, 109, 1109
Bsp13I	TCCGGA	1 cut(s)	1144
Bsp143I	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	2 cut(s)	911, 1098
BspANI	GGCC	2 cut(s)	268, 1175
BspCNI	CTCAG	8 cut(s)	93, 166, 379, 650, 961, 1093, 1125, 1213
BspEI	TCCGGA	1 cut(s)	1144
BspHI	TCATGA	3 cut(s)	645, 814, 1081
BspLI	GGNNCC	3 cut(s)	414, 945, 1443
BspMAI	CTGCAG	1 cut(s)	850
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	1204, 1331
BspT107I	GGYRCC	1 cut(s)	943
BsrDI	GCAATG	1 cut(s)	1361
BsrI	ACTGG	3 cut(s)	7, 416, 1245
BssECI	CCNNGG	2 cut(s)	492, 824
BssMI	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
BssNI	GRCGYC	1 cut(s)	1255
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	522, 924
Bst4CI	ACNGT	3 cut(s)	167, 860, 1291
Bst6I	CTCTTC	2 cut(s)	402, 980
BstACI	GRCGYC	1 cut(s)	1255
BstC8I	GCNNGC	4 cut(s)	33, 380, 1109, 1229
BstDEI	CTNAG	8 cut(s)	101, 174, 387, 637, 948, 1101, 1112, 1221
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	6 cut(s)	517, 727, 757, 919, 1213, 1325
BstH2I	RGCGCY	1 cut(s)	1436
BstHHI	GCGC	1 cut(s)	1435
BstKTI	GATC	6 cut(s)	274, 664, 835, 1207, 1212, 1339
BstMAI	GTCTC	4 cut(s)	279, 657, 730, 805
BstMBI	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 307, 674, 826, 851, 1439
BstNI	CCWGG	2 cut(s)	522, 924
BstNSI	RCATGY	5 cut(s)	31, 50, 911, 919, 1231
BstSCI	CCNGG	5 cut(s)	520, 823, 824, 922, 939
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	1109
BstV1I	GCAGC	3 cut(s)	244, 664, 832
BsuI	GTATCC	1 cut(s)	756
BsuRI	GGCC	2 cut(s)	268, 1175
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	6 cut(s)	517, 727, 757, 919, 1213, 1325
BtsI	GCAGTG	1 cut(s)	1092
BtsIMutI	CAGTG	4 cut(s)	257, 865, 1092, 1287
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	4 cut(s)	33, 380, 1109, 1229
CaiI	CAGNNNCTG	1 cut(s)	1240
CciI	TCATGA	3 cut(s)	645, 814, 1081
CfoI	GCGC	1 cut(s)	1435
Cfr13I	GGNCC	3 cut(s)	4, 170, 227
Cfr9I	CCCGGG	1 cut(s)	824
CseI	GACGC	2 cut(s)	384, 1244
Csp6I	GTAC	4 cut(s)	210, 626, 1238, 1372
CviQI	GTAC	4 cut(s)	210, 626, 1238, 1372
DdeI	CTNAG	8 cut(s)	101, 174, 387, 637, 948, 1101, 1112, 1221
DpnI	GATC	6 cut(s)	273, 663, 834, 1206, 1211, 1338
DpnII	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
DraI	TTTAAA	2 cut(s)	600, 879
Eam1104I	CTCTTC	2 cut(s)	402, 980
EarI	CTCTTC	2 cut(s)	402, 980
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	1175
Eco47I	GGWCC	3 cut(s)	4, 170, 227
Eco88I	CYCGRG	1 cut(s)	824
EcoRII	CCWGG	2 cut(s)	520, 922
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	3 cut(s)	296, 921, 1233
ErhI	CCWWGG	1 cut(s)	492
FalI	AAGNNNNNCTT	6 cut(s)	648, 680, 959, 991, 1160, 1192
FaqI	GGGAC	1 cut(s)	1396
Fnu4HI	GCNGC	4 cut(s)	258, 678, 846, 1098
FokI	GGATG	6 cut(s)	504, 734, 744, 906, 1200, 1332
Fsp4HI	GCNGC	4 cut(s)	258, 678, 846, 1098
FspBI	CTAG	1 cut(s)	1032
GlaI	GCGC	1 cut(s)	1434
GluI	GCNGC	4 cut(s)	258, 678, 846, 1098
GsuI	CTGGAG	1 cut(s)	1262
HaeII	RGCGCY	1 cut(s)	1436
HaeIII	GGCC	2 cut(s)	268, 1175
HapII	CCGG	3 cut(s)	825, 940, 1145
HgaI	GACGC	2 cut(s)	384, 1244
HhaI	GCGC	1 cut(s)	1435
Hin1I	GRCGYC	1 cut(s)	1255
Hin6I	GCGC	1 cut(s)	1433
HinP1I	GCGC	1 cut(s)	1433
HindIII	AAGCTT	2 cut(s)	299, 1149
HinfI	GANTC	3 cut(s)	533, 1263, 1409
HpaII	CCGG	3 cut(s)	825, 940, 1145
HphI	GGTGA	3 cut(s)	123, 496, 1214
Hpy166II	GTNNAC	3 cut(s)	170, 895, 1107
Hpy188I	TCNGA	7 cut(s)	307, 388, 515, 837, 951, 1115, 1209
Hpy8I	GTNNAC	3 cut(s)	170, 895, 1107
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	77, 356, 1162, 1186, 1193
HpyCH4III	ACNGT	3 cut(s)	167, 860, 1291
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 307, 674, 826, 851, 1439
HpyF3I	CTNAG	8 cut(s)	101, 174, 387, 637, 948, 1101, 1112, 1221
Hsp92I	GRCGYC	1 cut(s)	1255
HspAI	GCGC	1 cut(s)	1433
Kpn2I	TCCGGA	1 cut(s)	1144
Kzo9I	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
LmnI	GCTCC	3 cut(s)	328, 412, 1447
Lsp1109I	GCAGC	3 cut(s)	244, 664, 832
LweI	GCATC	8 cut(s)	138, 303, 431, 454, 766, 873, 928, 1240
MaeI	CTAG	1 cut(s)	1032
MaeIII	GTNAC	2 cut(s)	96, 1297
MalI	GATC	6 cut(s)	273, 663, 834, 1206, 1211, 1338
MboI	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
MboII	GAAGA	4 cut(s)	419, 803, 967, 979
MhlI	GDGCHC	3 cut(s)	37, 109, 1109
MluCI	AATT	5 cut(s)	537, 562, 575, 703, 1048
MlyI	GAGTC	2 cut(s)	1272, 1418
MmeI	TCCRAC	1 cut(s)	1036
Mph1103I	ATGCAT	3 cut(s)	296, 921, 1233
MroI	TCCGGA	1 cut(s)	1144
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	4 cut(s)	599, 840, 878, 983
MslI	CAYNNNNRTG	4 cut(s)	26, 522, 720, 1292
MspA1I	CMGCKG	1 cut(s)	1100
MspI	CCGG	3 cut(s)	825, 940, 1145
MspR9I	CCNGG	5 cut(s)	522, 825, 826, 924, 941
MvaI	CCWGG	2 cut(s)	522, 924
MwoI	GCNNNNNNNGC	6 cut(s)	230, 307, 674, 826, 851, 1439
NciI	CCSGG	3 cut(s)	825, 826, 941
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
NlaIV	GGNNCC	3 cut(s)	414, 945, 1443
NsiI	ATGCAT	3 cut(s)	296, 921, 1233
NspI	RCATGY	5 cut(s)	31, 50, 911, 919, 1231
PaeI	GCATGC	1 cut(s)	1231
PagI	TCATGA	3 cut(s)	645, 814, 1081
PceI	AGGCCT	1 cut(s)	1175
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	4 cut(s)	259, 679, 847, 1099
PleI	GAGTC	2 cut(s)	1271, 1417
PpsI	GAGTC	2 cut(s)	1271, 1417
Psp6I	CCWGG	2 cut(s)	520, 922
PspGI	CCWGG	2 cut(s)	520, 922
PspN4I	GGNNCC	3 cut(s)	414, 945, 1443
PspPI	GGNCC	3 cut(s)	4, 170, 227
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	1 cut(s)	1240
RsaI	GTAC	4 cut(s)	211, 627, 1239, 1373
RsaNI	GTAC	4 cut(s)	210, 626, 1238, 1372
RseI	CAYNNNNRTG	4 cut(s)	26, 522, 720, 1292
SaqAI	TTAA	4 cut(s)	599, 840, 878, 983
SatI	GCNGC	4 cut(s)	258, 678, 846, 1098
Sau3AI	GATC	6 cut(s)	271, 661, 832, 1204, 1209, 1336
Sau96I	GGNCC	3 cut(s)	4, 170, 227
SchI	GAGTC	2 cut(s)	1272, 1418
ScrFI	CCNGG	5 cut(s)	522, 825, 826, 924, 941
SduI	GDGCHC	3 cut(s)	37, 109, 1109
SfaNI	GCATC	8 cut(s)	138, 303, 431, 454, 766, 873, 928, 1240
SfcI	CTRYAG	1 cut(s)	846
SinI	GGWCC	3 cut(s)	4, 170, 227
SmaI	CCCGGG	1 cut(s)	826
SmiMI	CAYNNNNRTG	4 cut(s)	26, 522, 720, 1292
SmlI	CTYRAG	4 cut(s)	36, 438, 654, 1313
SmoI	CTYRAG	4 cut(s)	36, 438, 654, 1313
SphI	GCATGC	1 cut(s)	1231
Sse9I	AATT	5 cut(s)	537, 562, 575, 703, 1048
SseBI	AGGCCT	1 cut(s)	1175
SsiI	CCGC	2 cut(s)	911, 1098
SspMI	CTAG	1 cut(s)	1032
StuI	AGGCCT	1 cut(s)	1175
StyD4I	CCNGG	5 cut(s)	520, 823, 824, 922, 939
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	3 cut(s)	167, 860, 1291
TaqI	TCGA	3 cut(s)	360, 448, 466
TasI	AATT	5 cut(s)	537, 562, 575, 703, 1048
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	599, 840, 878, 983
Tru9I	TTAA	4 cut(s)	599, 840, 878, 983
TscAI	CASTG	4 cut(s)	257, 865, 1099, 1294
TseI	GCWGC	3 cut(s)	257, 677, 845
TspGWI	ACGGA	1 cut(s)	698
TspMI	CCCGGG	1 cut(s)	824
TspRI	CASTG	4 cut(s)	257, 865, 1099, 1294
VneI	GTGCAC	1 cut(s)	1105
VpaK11BI	GGWCC	3 cut(s)	4, 170, 227
XapI	RAATTY	1 cut(s)	1048
XbaI	TCTAGA	1 cut(s)	1031
XceI	RCATGY	5 cut(s)	31, 50, 911, 919, 1231
XmaI	CCCGGG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	1 cut(s)	1032
Zsp2I	ATGCAT	3 cut(s)	296, 921, 1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.