RLG00000031390

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000876
Physical Location & Seq
Forward (+)
4692275 .. 4694977
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031390

Sequence Viewer

Length: 987 bp
ATGGAAGCTTTGCATTTATTGCTGTTCCAAAATCAATTATGCACAGAAATTTTTGAAAACTTTGAAGAGACACCAGTAGCATCTGGGAGTATTGCTCAAGTGCATCGGGCTACTTTGAAATTTCGATACCCTGGTCAACGGGTGAAGCCTATAGCAGTTGCAGTTAAGATTAGACATCCTGGTGTTGGCGAATCAATTAGGAGAGATTTTGTAATAATCAATTTAGTAGTGAAAATGTCAAAGTTCATTCCTGCTTTAAAGTGGTGGAGATTGGATGAAAGTGGACGACAGTTTTCAGTTTTTATGATGTCTCAAGTTGACCTTGCAAGGGAAGCTGCCAATTTGAGCCGCTGGAAACGTATGAGCCAAGGGGAATGCGTGTCACATTATGGTGATGATCTTCAAGGGCATGAACGGATTAAATCTGCACTTGCTCACATTGGAACGCATGCACTTCTGAAGATGCTCCTGGTGGACAACTTTATACATGCAGACATGCATCCTGGGAACACACTTGTTTGGGTGGCTCAGAACAAGACTTCTCAGAAGCGACTGTTTAAATCAAAGCCTCATGTCATTTTCCTTGATGTAGGCATGACTGCTGAACTCTCTAGAAGTGACAGAGTGAATTTACTTGAATTTTTCAAGGCTGTTGCACGTCGTGATGGGCGCACTGCTGCTGAGTGCACACTAAGACTCTCTAAGCAACAGAATTGCCCAAATCCAAGGGCTTTCATTGAGGTAGTGGAGGAGTCATTCACTTTCTGGGGTACTCCAGAAGGTGATTTGGTTCGTCCTGCTGATTGCATGCAAGTCAATGTTGATGGCAATGTTTGTACTGTCATGGTGACAACATTGGTTCTTGAGGGATGGCAGAGGAAACTTGATCCAGCATACAATGTGATGCATACCTTGCAAACTCTGCTTCTCAAGGCTGACTGGGCAAAGTCCCTTTCATACACAATCGAGGGGCTAATGGCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

329

Amino Acids

37.23

Weight (kDa)

9.0

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 14 - 121 8e-20 ABC1 atypical kinase-like domain
ABC1 PF03109 135 - 228 2.5e-12 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 349
AclWI GGATC 1 cut(s) 881
AcsI RAATTY 4 cut(s) 48, 119, 628, 638
AcuI CTGAAG 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 772, 838
AfiI CCNNNNNNNGG 2 cut(s) 185, 328
AgsI TTSAA 6 cut(s) 56, 65, 118, 404, 638, 646
AjiI CACGTC 1 cut(s) 659
AjnI CCWGG 4 cut(s) 130, 178, 468, 502
AluBI AGCT 2 cut(s) 8, 335
AluI AGCT 2 cut(s) 8, 335
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 2 cut(s) 62, 315
Alw44I GTGCAC 1 cut(s) 685
AlwI GGATC 1 cut(s) 881
ApaLI GTGCAC 1 cut(s) 685
ApeKI GCWGC 2 cut(s) 335, 677
ApoI RAATTY 4 cut(s) 48, 119, 628, 638
AspLEI GCGC 1 cut(s) 672
AsuHPI GGTGA 4 cut(s) 154, 404, 794, 859
BaeGI GKGCMC 1 cut(s) 689
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 2 cut(s) 322, 664
BccI CCATC 3 cut(s) 659, 818, 864
BciT130I CCWGG 4 cut(s) 132, 180, 470, 504
BcoDI GTCTC 2 cut(s) 62, 315
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 3 cut(s) 336, 349, 678
BlsI GCNGC 3 cut(s) 337, 350, 679
Bme1390I CCNGG 4 cut(s) 132, 180, 470, 504
BmgBI CACGTC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 981
BmrFI CCNGG 4 cut(s) 132, 180, 470, 504
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 5 cut(s) 89, 112, 453, 508, 894
BmuI ACTGGG 1 cut(s) 949
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpmI CTGGAG 1 cut(s) 759
BpuEI CTTGAG 4 cut(s) 81, 297, 884, 914
BsaJI CCNNGG 4 cut(s) 130, 367, 503, 725
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 328
Bse1I ACTGG 2 cut(s) 74, 944
Bse3DI GCAATG 1 cut(s) 835
BseBI CCWGG 4 cut(s) 132, 180, 470, 504
BseDI CCNNGG 4 cut(s) 130, 367, 503, 725
BseGI GGATG 4 cut(s) 175, 280, 499, 875
BseLI CCNNNNNNNGG 2 cut(s) 185, 328
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 3 cut(s) 542, 557, 672
BseNI ACTGG 2 cut(s) 74, 944
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 1 cut(s) 689
BseXI GCAGC 2 cut(s) 322, 664
BsgI GTGCAG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 689
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 2 cut(s) 185, 328
BsmAI GTCTC 2 cut(s) 62, 315
BsmFI GGGAC 1 cut(s) 934
BsmI GAATGC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 689
Bsp143I GATC 2 cut(s) 397, 886
BspACI CCGC 1 cut(s) 349
BspCNI CTCAG 3 cut(s) 541, 556, 673
BspLI GGNNCC 1 cut(s) 981
BspPI GGATC 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 835
BsrI ACTGG 2 cut(s) 74, 944
BssECI CCNNGG 4 cut(s) 130, 367, 503, 725
BssMI GATC 2 cut(s) 397, 886
BssT1I CCWWGG 2 cut(s) 367, 725
Bst2UI CCWGG 4 cut(s) 132, 180, 470, 504
Bst4CI ACNGT 3 cut(s) 291, 555, 841
Bst6I CTCTTC 1 cut(s) 60
BstAPI GCANNNNNTGC 3 cut(s) 19, 913, 922
BstC8I GCNNGC 2 cut(s) 450, 809
BstDEI CTNAG 5 cut(s) 528, 543, 681, 692, 702
BstF5I GGATG 4 cut(s) 175, 280, 499, 875
BstHHI GCGC 1 cut(s) 672
BstKTI GATC 2 cut(s) 400, 889
BstMAI GTCTC 2 cut(s) 62, 315
BstMBI GATC 2 cut(s) 397, 886
BstMWI GCNNNNNNNGC 5 cut(s) 19, 332, 913, 922, 941
BstNI CCWGG 4 cut(s) 132, 180, 470, 504
BstNSI RCATGY 4 cut(s) 452, 491, 499, 811
BstSCI CCNGG 4 cut(s) 130, 178, 468, 502
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 689
BstV1I GCAGC 2 cut(s) 322, 664
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 4 cut(s) 175, 280, 499, 875
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 2 cut(s) 450, 809
CfoI GCGC 1 cut(s) 672
Csp6I GTAC 2 cut(s) 771, 837
CviAII CATG 8 cut(s) 410, 449, 488, 496, 572, 595, 808, 844
CviQI GTAC 2 cut(s) 771, 837
DdeI CTNAG 5 cut(s) 528, 543, 681, 692, 702
DpnI GATC 2 cut(s) 399, 888
DpnII GATC 2 cut(s) 397, 886
DraI TTTAAA 2 cut(s) 258, 559
DraIII CACNNNGTG 1 cut(s) 662
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 367, 725
Eco57I CTGAAG 1 cut(s) 479
EcoRII CCWGG 4 cut(s) 130, 178, 468, 502
EcoT14I CCWWGG 2 cut(s) 367, 725
EcoT22I ATGCAT 2 cut(s) 501, 909
ErhI CCWWGG 2 cut(s) 367, 725
FaeI CATG 8 cut(s) 413, 452, 491, 499, 575, 598, 811, 847
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 934
FatI CATG 8 cut(s) 409, 448, 487, 495, 571, 594, 807, 843
Fnu4HI GCNGC 3 cut(s) 336, 349, 678
FokI GGATG 4 cut(s) 162, 287, 486, 882
Fsp4HI GCNGC 3 cut(s) 336, 349, 678
FspBI CTAG 1 cut(s) 612
GlaI GCGC 1 cut(s) 671
GluI GCNGC 3 cut(s) 336, 349, 678
GsuI CTGGAG 1 cut(s) 759
HhaI GCGC 1 cut(s) 672
Hin1II CATG 8 cut(s) 413, 452, 491, 499, 575, 598, 811, 847
Hin6I GCGC 1 cut(s) 670
HinP1I GCGC 1 cut(s) 670
HincII GTYRAC 2 cut(s) 137, 319
HindII GTYRAC 2 cut(s) 137, 319
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 3 cut(s) 191, 696, 752
HphI GGTGA 4 cut(s) 154, 404, 794, 859
Hpy166II GTNNAC 5 cut(s) 137, 284, 319, 475, 687
Hpy188I TCNGA 3 cut(s) 459, 531, 546
Hpy188III TCNNGA 4 cut(s) 612, 662, 776, 863
Hpy8I GTNNAC 5 cut(s) 137, 284, 319, 475, 687
Hpy99I CGWCG 1 cut(s) 663
HpyAV CCTTC 1 cut(s) 773
HpyCH4III ACNGT 3 cut(s) 291, 555, 841
HpyCH4IV ACGT 2 cut(s) 358, 658
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 332, 913, 922, 941
HpyF3I CTNAG 5 cut(s) 528, 543, 681, 692, 702
HpySE526I ACGT 2 cut(s) 358, 658
Hsp92II CATG 8 cut(s) 413, 452, 491, 499, 575, 598, 811, 847
HspAI GCGC 1 cut(s) 670
Kzo9I GATC 2 cut(s) 397, 886
LmnI GCTCC 2 cut(s) 471, 985
Lsp1109I GCAGC 2 cut(s) 322, 664
LweI GCATC 5 cut(s) 89, 112, 453, 508, 894
MaeI CTAG 1 cut(s) 612
MaeII ACGT 2 cut(s) 358, 658
MaeIII GTNAC 3 cut(s) 381, 617, 847
MalI GATC 2 cut(s) 399, 888
MboI GATC 2 cut(s) 397, 886
MboII GAAGA 3 cut(s) 77, 392, 472
MhlI GDGCHC 1 cut(s) 689
MluCI AATT 9 cut(s) 35, 48, 119, 195, 220, 340, 628, 638, 712
MlyI GAGTC 2 cut(s) 690, 761
MnlI CCTC 6 cut(s) 579, 733, 742, 859, 870, 961
Mph1103I ATGCAT 2 cut(s) 501, 909
MseI TTAA 5 cut(s) 165, 257, 420, 558, 985
MslI CAYNNNNRTG 2 cut(s) 180, 390
MspA1I CMGCKG 1 cut(s) 351
MspR9I CCNGG 4 cut(s) 132, 180, 470, 504
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 4 cut(s) 132, 180, 470, 504
MwoI GCNNNNNNNGC 5 cut(s) 19, 332, 913, 922, 941
NdeII GATC 2 cut(s) 397, 886
NlaIII CATG 8 cut(s) 413, 452, 491, 499, 575, 598, 811, 847
NlaIV GGNNCC 1 cut(s) 981
NmuCI GTSAC 3 cut(s) 381, 617, 847
NsiI ATGCAT 2 cut(s) 501, 909
NspI RCATGY 4 cut(s) 452, 491, 499, 811
PaeI GCATGC 2 cut(s) 452, 811
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 337, 350, 679
PleI GAGTC 2 cut(s) 690, 760
PpsI GAGTC 2 cut(s) 690, 760
Psp6I CCWGG 4 cut(s) 130, 178, 468, 502
PspGI CCWGG 4 cut(s) 130, 178, 468, 502
PspN4I GGNNCC 1 cut(s) 981
RsaI GTAC 2 cut(s) 772, 838
RsaNI GTAC 2 cut(s) 771, 837
RseI CAYNNNNRTG 2 cut(s) 180, 390
SaqAI TTAA 5 cut(s) 165, 257, 420, 558, 985
SatI GCNGC 3 cut(s) 336, 349, 678
Sau3AI GATC 2 cut(s) 397, 886
SchI GAGTC 2 cut(s) 690, 761
ScrFI CCNGG 4 cut(s) 132, 180, 470, 504
SduI GDGCHC 1 cut(s) 689
SetI ASST 8 cut(s) 10, 324, 337, 361, 661, 744, 784, 914
SfaNI GCATC 5 cut(s) 89, 112, 453, 508, 894
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 180, 390
SmlI CTYRAG 4 cut(s) 96, 312, 863, 929
SmoI CTYRAG 4 cut(s) 96, 312, 863, 929
SphI GCATGC 2 cut(s) 452, 811
Sse9I AATT 9 cut(s) 35, 48, 119, 195, 220, 340, 628, 638, 712
SsiI CCGC 1 cut(s) 349
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 4 cut(s) 130, 178, 468, 502
StyI CCWWGG 2 cut(s) 367, 725
TaaI ACNGT 3 cut(s) 291, 555, 841
TaiI ACGT 2 cut(s) 361, 661
TaqI TCGA 2 cut(s) 124, 966
TasI AATT 9 cut(s) 35, 48, 119, 195, 220, 340, 628, 638, 712
TatI WGTACW 1 cut(s) 836
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 5 cut(s) 165, 257, 420, 558, 985
Tru9I TTAA 5 cut(s) 165, 257, 420, 558, 985
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 3 cut(s) 381, 617, 847
TseI GCWGC 2 cut(s) 335, 677
Tsp45I GTSAC 3 cut(s) 381, 617, 847
TspDTI ATGAA 5 cut(s) 235, 291, 426, 724, 945
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 1 cut(s) 679
VneI GTGCAC 1 cut(s) 685
XapI RAATTY 4 cut(s) 48, 119, 628, 638
XbaI TCTAGA 1 cut(s) 611
XceI RCATGY 4 cut(s) 452, 491, 499, 811
XspI CTAG 1 cut(s) 612
Zsp2I ATGCAT 2 cut(s) 501, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.